BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00022296
         (1105 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III s...   466   e-129
ref|XP_003535613.1| PREDICTED: DNA-directed RNA polymerase III s...   459   e-127
ref|XP_003592281.1| DNA-directed RNA polymerase III subunit RPC3...   400   e-109
ref|XP_003592280.1| DNA-directed RNA polymerase III subunit RPC3...   400   e-109
ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s...   348   1e-93

>ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Glycine
            max]
          Length = 518

 Score =  466 bits (1200), Expect = e-129
 Identities = 244/353 (69%), Positives = 283/353 (80%), Gaps = 6/353 (1%)
 Frame = +2

Query: 65   MVSQFGIKLAVHLITNHFGNLVAKVCEKLLCIGPLPLEQLIRYTELTKEQVKNSLLVLVQ 244
            MV++ GIK  VHLIT HFG +VAKVCEKL   GPL L+QL+RYT+ TK+QV+NSLLVLVQ
Sbjct: 1    MVTEHGIKFGVHLITKHFGKIVAKVCEKLFSHGPLTLDQLVRYTDFTKDQVRNSLLVLVQ 60

Query: 245  HNCAQAFVL----EGGDVDGLKERTQYLALFDNILHRLRFPKFMEIVSQELDDECVEXXX 412
            HNCAQAFV     +  D D L+ RTQYL LFDNI+HRLRFPKF++IVS++LD+ECV+   
Sbjct: 61   HNCAQAFVSAPQDDDDDADRLRVRTQYLVLFDNIIHRLRFPKFLDIVSRKLDEECVKLLV 120

Query: 413  XXXXXXXXTLKQMVDRASEGKENAVATDVVRESLSKLLKARFVERCPAPEAVISKPVDEE 592
                    TLKQMVDR S+GKENAV T VVRE+L KLL ARFVERCPAPE V+S    +E
Sbjct: 121  GLLRDGRLTLKQMVDRESQGKENAVPTKVVRETLCKLLTARFVERCPAPEPVVSTSF-KE 179

Query: 593  KNTRKRGAKSAKKFEAPETIEQCVIEAAVPGEAIRFLLTADTGCNADRETNSDDSQMISV 772
              T+KRGAKSAK FEAPET+EQ V++AAVPG+ IRF LTA+ G N DRETNSDD  MISV
Sbjct: 180  TTTKKRGAKSAKIFEAPETLEQRVVDAAVPGDVIRFSLTANMGSNVDRETNSDDVPMISV 239

Query: 773  GENDAKEESTLWRANFEEFIRYLRHKVLIENVRTRMDDGAATVLGAILEATKTVEKNVKI 952
             E+ AKEE  LWRANFEEFIR+LRHKVLIENVRT+ DDG ATVL A+LEAT +VEK VK+
Sbjct: 240  EEDVAKEEQILWRANFEEFIRHLRHKVLIENVRTQHDDGTATVLSAVLEATGSVEKKVKM 299

Query: 953  ENSVPLSLDTIFTEVMKTENGRTMTIDRVKASLVQLGCSQKML--DEYIIDLK 1105
            +NSVPLSLDTI TEVMKT+ GRTMTIDR++ASLVQLGCS  M+  + Y IDLK
Sbjct: 300  DNSVPLSLDTIITEVMKTDTGRTMTIDRIRASLVQLGCSPSMILEESYCIDLK 352


>ref|XP_003535613.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Glycine
            max]
          Length = 510

 Score =  459 bits (1182), Expect = e-127
 Identities = 242/349 (69%), Positives = 279/349 (79%), Gaps = 2/349 (0%)
 Frame = +2

Query: 65   MVSQFGIKLAVHLITNHFGNLVAKVCEKLLCIGPLPLEQLIRYTELTKEQVKNSLLVLVQ 244
            MV+Q GIK AVHLIT HFG +VAKVCE L   GPL L+QL+RYT+LTK+QV+NSLLVLVQ
Sbjct: 1    MVTQHGIKFAVHLITKHFGKIVAKVCENLFIHGPLTLDQLVRYTDLTKDQVRNSLLVLVQ 60

Query: 245  HNCAQAFVLEGGDVDGLKERTQYLALFDNILHRLRFPKFMEIVSQELDDECVEXXXXXXX 424
            HNC QAFV    D D L+ RTQYL LFD+ILHRLRFPKF+EIVS++LD+ECV+       
Sbjct: 61   HNCVQAFVSAPQDDDRLRVRTQYLVLFDSILHRLRFPKFLEIVSRKLDEECVKLLDGLLR 120

Query: 425  XXXXTLKQMVDRASEGKENAVATDVVRESLSKLLKARFVERCPAPEAVISKPVDEEKNTR 604
                TLKQMVDR    ++NAV T VVRE+L KLL ARFVERCPAPE V+S    +E  TR
Sbjct: 121  DGRLTLKQMVDR----EKNAVPTKVVRETLCKLLTARFVERCPAPEPVVSTSF-KETTTR 175

Query: 605  KRGAKSAKKFEAPETIEQCVIEAAVPGEAIRFLLTADTGCNADRETNSDDSQMISVGEND 784
            KRGAKSAK FEAPET+EQ V++AAVPG+ IRF L ADT C+ DRETNSDD+QMISV E  
Sbjct: 176  KRGAKSAKIFEAPETLEQRVVDAAVPGDVIRFSLAADTRCSVDRETNSDDAQMISVEEEV 235

Query: 785  AKEESTLWRANFEEFIRYLRHKVLIENVRTRMDDGAATVLGAILEATKTVEKNVKIENSV 964
            AKE   LWRANFEEFIR+LRHKVLIENVRT+ DDG ATVL A+LEAT++V+K VK ENSV
Sbjct: 236  AKEGQILWRANFEEFIRHLRHKVLIENVRTQHDDGTATVLSAVLEATRSVQKKVKTENSV 295

Query: 965  PLSLDTIFTEVMKTENGRTMTIDRVKASLVQLGCSQKML--DEYIIDLK 1105
            PLSLDTI TEVMKT+ GRTMT+DR++ASLVQLGCS  M+  + Y IDLK
Sbjct: 296  PLSLDTIITEVMKTDTGRTMTVDRIRASLVQLGCSPSMILEESYSIDLK 344


>ref|XP_003592281.1| DNA-directed RNA polymerase III subunit RPC3 [Medicago truncatula]
            gi|355481329|gb|AES62532.1| DNA-directed RNA polymerase
            III subunit RPC3 [Medicago truncatula]
          Length = 505

 Score =  400 bits (1028), Expect = e-109
 Identities = 222/348 (63%), Positives = 258/348 (74%), Gaps = 1/348 (0%)
 Frame = +2

Query: 65   MVSQFGIKLAVHLITNHFGNLVAKVCEKLLCIGPLPLEQLIRYTELTKEQVKNSLLVLVQ 244
            MVSQ+GIK AVHLIT HFG +VA V EKLL  GPL LE + RYTEL+ E VKNSLLVL+Q
Sbjct: 1    MVSQWGIKFAVHLITAHFGKIVANVAEKLLNNGPLTLELVTRYTELSNEHVKNSLLVLIQ 60

Query: 245  HNCAQAFVLEGGDVDGLKE-RTQYLALFDNILHRLRFPKFMEIVSQELDDECVEXXXXXX 421
            HNC QAF  E GD DG +  + +YL LFDNI+HRLRFPKFMEIVSQELDD+CV       
Sbjct: 61   HNCVQAFT-EAGDEDGSRVVKPKYLVLFDNIVHRLRFPKFMEIVSQELDDKCVTILKGLL 119

Query: 422  XXXXXTLKQMVDRASEGKENAVATDVVRESLSKLLKARFVERCPAPEAVISKPVDEEKNT 601
                 TLKQ+VD   + KENA+A D VRESL +LL+AR+VERCP PEA I +   ++K  
Sbjct: 120  RDGRLTLKQLVDMGQD-KENAMAPDAVRESLCRLLRARYVERCPVPEAKIVEEKGDDKKG 178

Query: 602  RKRGAKSAKKFEAPETIEQCVIEAAVPGEAIRFLLTADTGCNADRETNSDDSQMISVGEN 781
            R    K A+ F+ PE  E  V+EAA  G+ IRF LTA TGC++D ET   D   ISV EN
Sbjct: 179  RSTSNKKARVFKVPE--EHRVVEAAKRGDMIRFSLTAYTGCSSDGETKLAD---ISVAEN 233

Query: 782  DAKEESTLWRANFEEFIRYLRHKVLIENVRTRMDDGAATVLGAILEATKTVEKNVKIENS 961
             AKEES LWRANFEEFIRYLR K LIENVR RMDDGAATVL AILEAT+ ++KNVKIE S
Sbjct: 234  VAKEESFLWRANFEEFIRYLRDKALIENVRARMDDGAATVLSAILEATRNIDKNVKIEQS 293

Query: 962  VPLSLDTIFTEVMKTENGRTMTIDRVKASLVQLGCSQKMLDEYIIDLK 1105
             P +LDTI +EVMKTENGRTMT+DRVKA+LVQLGC+    ++ I+D K
Sbjct: 294  APCTLDTISSEVMKTENGRTMTMDRVKAALVQLGCA----NQNIVDFK 337


>ref|XP_003592280.1| DNA-directed RNA polymerase III subunit RPC3 [Medicago truncatula]
            gi|355481328|gb|AES62531.1| DNA-directed RNA polymerase
            III subunit RPC3 [Medicago truncatula]
          Length = 468

 Score =  400 bits (1028), Expect = e-109
 Identities = 222/348 (63%), Positives = 258/348 (74%), Gaps = 1/348 (0%)
 Frame = +2

Query: 65   MVSQFGIKLAVHLITNHFGNLVAKVCEKLLCIGPLPLEQLIRYTELTKEQVKNSLLVLVQ 244
            MVSQ+GIK AVHLIT HFG +VA V EKLL  GPL LE + RYTEL+ E VKNSLLVL+Q
Sbjct: 1    MVSQWGIKFAVHLITAHFGKIVANVAEKLLNNGPLTLELVTRYTELSNEHVKNSLLVLIQ 60

Query: 245  HNCAQAFVLEGGDVDGLKE-RTQYLALFDNILHRLRFPKFMEIVSQELDDECVEXXXXXX 421
            HNC QAF  E GD DG +  + +YL LFDNI+HRLRFPKFMEIVSQELDD+CV       
Sbjct: 61   HNCVQAFT-EAGDEDGSRVVKPKYLVLFDNIVHRLRFPKFMEIVSQELDDKCVTILKGLL 119

Query: 422  XXXXXTLKQMVDRASEGKENAVATDVVRESLSKLLKARFVERCPAPEAVISKPVDEEKNT 601
                 TLKQ+VD   + KENA+A D VRESL +LL+AR+VERCP PEA I +   ++K  
Sbjct: 120  RDGRLTLKQLVDMGQD-KENAMAPDAVRESLCRLLRARYVERCPVPEAKIVEEKGDDKKG 178

Query: 602  RKRGAKSAKKFEAPETIEQCVIEAAVPGEAIRFLLTADTGCNADRETNSDDSQMISVGEN 781
            R    K A+ F+ PE  E  V+EAA  G+ IRF LTA TGC++D ET   D   ISV EN
Sbjct: 179  RSTSNKKARVFKVPE--EHRVVEAAKRGDMIRFSLTAYTGCSSDGETKLAD---ISVAEN 233

Query: 782  DAKEESTLWRANFEEFIRYLRHKVLIENVRTRMDDGAATVLGAILEATKTVEKNVKIENS 961
             AKEES LWRANFEEFIRYLR K LIENVR RMDDGAATVL AILEAT+ ++KNVKIE S
Sbjct: 234  VAKEESFLWRANFEEFIRYLRDKALIENVRARMDDGAATVLSAILEATRNIDKNVKIEQS 293

Query: 962  VPLSLDTIFTEVMKTENGRTMTIDRVKASLVQLGCSQKMLDEYIIDLK 1105
             P +LDTI +EVMKTENGRTMT+DRVKA+LVQLGC+    ++ I+D K
Sbjct: 294  APCTLDTISSEVMKTENGRTMTMDRVKAALVQLGCA----NQNIVDFK 337


>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
            vinifera]
          Length = 511

 Score =  348 bits (893), Expect = 1e-93
 Identities = 186/351 (52%), Positives = 241/351 (68%), Gaps = 4/351 (1%)
 Frame = +2

Query: 65   MVSQFGIKLAVHLITNHFGNLVAKVCEKLLCIGPLPLEQLIRYTELTKEQVKNSLLVLVQ 244
            M +Q+G++LAVHLI++HFGNLVAKVC+ LL  G L L  +IR+TEL  +QVK+ +LVL+Q
Sbjct: 1    MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60

Query: 245  HNCAQAFVLEGGDVDGLKERTQYLALFDNILHRLRFPKFMEIVSQELDDECVEXXXXXXX 424
            HNC QAF ++    +  +  TQY+ALF NILHR+RF KF+ IVS+ELD EC E       
Sbjct: 61   HNCVQAFAIQQ---EAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGLLQ 117

Query: 425  XXXXTLKQMVDRASEGKENAVATDVVRESLSKLLKARFVERCPAPEAVISKPVDEEKNTR 604
                TL+Q++DRA   +   V  D +RES  KL++A FVERCPA E  ++ P +EE   R
Sbjct: 118  HGRLTLEQILDRAKSNQREPVVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEETPAR 177

Query: 605  KRGAKSAKKFEAPETIEQCVIEAAVPGEAIRFLLTADTGCNADRETNSDDSQMISVGEND 784
            KRGAKSAK  E P+TIEQ  I AA P +A RF +  +TG + D   N     +    E  
Sbjct: 178  KRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDDSPNRKQDALELDKETG 237

Query: 785  AK-EESTLWRANFEEFIRYLRHKVLIENVRTRMDDGAATVLGAILEATKTVEKNVKIENS 961
            A  E+  LWRANFEEF+R LRHK  I NV+TR+DDGAA VL A+LEAT++ EK VK ENS
Sbjct: 238  ASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLEATRSEEKKVKTENS 297

Query: 962  VPLSLDTIFTEVMKTENGRTMTIDRVKASLVQLGCS---QKMLDEYIIDLK 1105
            VPLS+DTIF  VMK+E GR+MT++RV+ SL+QLGC+   +   + Y +DLK
Sbjct: 298  VPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAESYSVDLK 348