BLASTX nr result
ID: Glycyrrhiza23_contig00022284
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00022284
(271 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003622527.1| Pentatricopeptide repeat-containing protein ... 153 2e-35
ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containi... 150 1e-34
ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 122 2e-26
ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containi... 122 2e-26
emb|CBI39452.3| unnamed protein product [Vitis vinifera] 122 3e-26
>ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 721
Score = 153 bits (386), Expect = 2e-35
Identities = 72/90 (80%), Positives = 81/90 (90%)
Frame = -2
Query: 270 LQPNIITYNTLIKGLCEARKLDKMKDVLERMKGDGSVFPDTCTFNTLINSHCCAGNLDEA 91
L+PNI+TYNTLIKGLCEA+K DKMK++LE+MKGDG PD CTFNTLINSHCCAGNLDEA
Sbjct: 329 LKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEA 388
Query: 90 LKVFESMKKFQVAADSASYSVLIRGLGQKG 1
KVFE+MKK +V+ADSASYSVLIR L QKG
Sbjct: 389 FKVFENMKKLEVSADSASYSVLIRTLCQKG 418
Score = 61.2 bits (147), Expect = 8e-08
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = -2
Query: 264 PNIITYNTLIKGLCEARKLDKMKDVLERM-KGDGSVFPDTCTFNTLINSHCCAGNLDEAL 88
P+++TYNTL+ GLC A K+ +++ M K + PD T+ TLI +C +DEAL
Sbjct: 259 PDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEAL 318
Query: 87 KVFESMKKFQVAADSASYSVLIRGL 13
+ E M + + +Y+ LI+GL
Sbjct: 319 DILEEMNGRGLKPNIVTYNTLIKGL 343
>ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Glycine max]
Length = 729
Score = 150 bits (378), Expect = 1e-34
Identities = 72/90 (80%), Positives = 79/90 (87%)
Frame = -2
Query: 270 LQPNIITYNTLIKGLCEARKLDKMKDVLERMKGDGSVFPDTCTFNTLINSHCCAGNLDEA 91
L+PN+ITYNTL+KGLCEA KLDKMKDVLERMK DG PDT TFNT+I+ HCCAGNLDEA
Sbjct: 322 LKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEA 381
Query: 90 LKVFESMKKFQVAADSASYSVLIRGLGQKG 1
LKVFESMKKF++ ADSASYS LIR L QKG
Sbjct: 382 LKVFESMKKFRIPADSASYSTLIRSLCQKG 411
Score = 67.8 bits (164), Expect = 9e-10
Identities = 31/90 (34%), Positives = 51/90 (56%)
Frame = -2
Query: 270 LQPNIITYNTLIKGLCEARKLDKMKDVLERMKGDGSVFPDTCTFNTLINSHCCAGNLDEA 91
+ P+++T+N+L+ L + + + K+V + M G V PDTCT+N LI C +DE
Sbjct: 179 VSPSVVTFNSLMSILLKRGRTNMAKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEG 238
Query: 90 LKVFESMKKFQVAADSASYSVLIRGLGQKG 1
+ F M+ F AD +Y+ L+ GL + G
Sbjct: 239 FRFFREMESFNCDADVVTYNTLVDGLCRAG 268
Score = 55.5 bits (132), Expect = 5e-06
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = -2
Query: 261 NIITYNTLIKGLCEARKLDKMKDVLERM-KGDGSVFPDTCTFNTLINSHCCAGNLDEALK 85
+++TYNTL+ GLC A K+ ++++ M K + P+ T+ TLI +C ++EAL
Sbjct: 253 DVVTYNTLVDGLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALV 312
Query: 84 VFESMKKFQVAADSASYSVLIRGL 13
V E M + + +Y+ L++GL
Sbjct: 313 VLEEMTSRGLKPNMITYNTLVKGL 336
>ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 122 bits (307), Expect = 2e-26
Identities = 58/90 (64%), Positives = 71/90 (78%)
Frame = -2
Query: 270 LQPNIITYNTLIKGLCEARKLDKMKDVLERMKGDGSVFPDTCTFNTLINSHCCAGNLDEA 91
L+ N ITYNTLIKGLCEARK +K+KD+LE GDG+ PDTCTFNTL++ HC AGNLD+A
Sbjct: 323 LKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDA 382
Query: 90 LKVFESMKKFQVAADSASYSVLIRGLGQKG 1
LKVFE M + ++ DSA+YS L+R L Q G
Sbjct: 383 LKVFERMSELKIQPDSATYSALVRSLCQGG 412
Score = 65.1 bits (157), Expect = 6e-09
Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = -2
Query: 267 QPNIITYNTLIKGLCEARKLDKMKDVLERM-KGDGSVFPDTCTFNTLINSHCCAGNLDEA 91
+P+++TYNTL+ GLC A K+ +V++ M K + P+ T+ TLI +C +++A
Sbjct: 252 EPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKA 311
Query: 90 LKVFESMKKFQVAADSASYSVLIRGL 13
L VFE M + A++ +Y+ LI+GL
Sbjct: 312 LAVFEEMVNQGLKANNITYNTLIKGL 337
Score = 61.2 bits (147), Expect = 8e-08
Identities = 28/90 (31%), Positives = 49/90 (54%)
Frame = -2
Query: 270 LQPNIITYNTLIKGLCEARKLDKMKDVLERMKGDGSVFPDTCTFNTLINSHCCAGNLDEA 91
+ P+++T+N+L+ L + + + K V + M V PDT TFN LI C G +D+
Sbjct: 180 VSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDG 239
Query: 90 LKVFESMKKFQVAADSASYSVLIRGLGQKG 1
++F + +F D +Y+ L+ GL + G
Sbjct: 240 FRIFNDLSRFGCEPDVVTYNTLVDGLCRAG 269
>ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 122 bits (307), Expect = 2e-26
Identities = 58/90 (64%), Positives = 71/90 (78%)
Frame = -2
Query: 270 LQPNIITYNTLIKGLCEARKLDKMKDVLERMKGDGSVFPDTCTFNTLINSHCCAGNLDEA 91
L+ N ITYNTLIKGLCEARK +K+KD+LE GDG+ PDTCTFNTL++ HC AGNLD+A
Sbjct: 323 LKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDA 382
Query: 90 LKVFESMKKFQVAADSASYSVLIRGLGQKG 1
LKVFE M + ++ DSA+YS L+R L Q G
Sbjct: 383 LKVFERMSELKIQPDSATYSALVRSLCQGG 412
Score = 65.1 bits (157), Expect = 6e-09
Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Frame = -2
Query: 267 QPNIITYNTLIKGLCEARKLDKMKDVLERM-KGDGSVFPDTCTFNTLINSHCCAGNLDEA 91
+P+++TYNTL+ GLC A K+ +V++ M K + P+ T+ TLI +C +++A
Sbjct: 252 EPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKA 311
Query: 90 LKVFESMKKFQVAADSASYSVLIRGL 13
L VFE M + A++ +Y+ LI+GL
Sbjct: 312 LAVFEEMVNQGLKANNITYNTLIKGL 337
Score = 61.2 bits (147), Expect = 8e-08
Identities = 28/90 (31%), Positives = 49/90 (54%)
Frame = -2
Query: 270 LQPNIITYNTLIKGLCEARKLDKMKDVLERMKGDGSVFPDTCTFNTLINSHCCAGNLDEA 91
+ P+++T+N+L+ L + + + K V + M V PDT TFN LI C G +D+
Sbjct: 180 VSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDG 239
Query: 90 LKVFESMKKFQVAADSASYSVLIRGLGQKG 1
++F + +F D +Y+ L+ GL + G
Sbjct: 240 FRIFNDLSRFGCEPDVVTYNTLVDGLCRAG 269
>emb|CBI39452.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 122 bits (306), Expect = 3e-26
Identities = 57/90 (63%), Positives = 70/90 (77%)
Frame = -2
Query: 270 LQPNIITYNTLIKGLCEARKLDKMKDVLERMKGDGSVFPDTCTFNTLINSHCCAGNLDEA 91
L+PN ITYNTLI+GLCEA+KLDK+K++LE M GDG PDTCT NTLI +HC G L+EA
Sbjct: 339 LKPNKITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEA 398
Query: 90 LKVFESMKKFQVAADSASYSVLIRGLGQKG 1
VFE M + +V DSA+YSVL+R L Q+G
Sbjct: 399 FSVFEKMSELRVQPDSATYSVLVRSLCQRG 428
Score = 57.4 bits (137), Expect = 1e-06
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = -2
Query: 264 PNIITYNTLIKGLCEARKLDKMKDVLERM-KGDGSVFPDTCTFNTLINSHCCAGNLDEAL 88
P+++TYNTL+ GLC A K+ +V++ M K ++ P+ T+ TLI +C ++ EAL
Sbjct: 269 PDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEAL 328
Query: 87 KVFESMKKFQVAADSASYSVLIRGL 13
+ M + + +Y+ LI+GL
Sbjct: 329 SLLAEMVSRGLKPNKITYNTLIQGL 353
Score = 57.0 bits (136), Expect = 2e-06
Identities = 27/90 (30%), Positives = 47/90 (52%)
Frame = -2
Query: 270 LQPNIITYNTLIKGLCEARKLDKMKDVLERMKGDGSVFPDTCTFNTLINSHCCAGNLDEA 91
+ P+++T+N+L+ + + + K + + M V PDT TFN LI C +DE
Sbjct: 196 VSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEG 255
Query: 90 LKVFESMKKFQVAADSASYSVLIRGLGQKG 1
F+ M +F+ D +Y+ L+ GL + G
Sbjct: 256 FWFFKEMSRFKCDPDVVTYNTLVDGLCRAG 285