BLASTX nr result

ID: Glycyrrhiza23_contig00022226 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00022226
         (478 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003606390.1| DEAD-box ATP-dependent RNA helicase [Medicag...   238   3e-61
ref|XP_003533799.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP...   230   1e-58
ref|XP_003547512.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP...   226   1e-57
emb|CBI27769.3| unnamed protein product [Vitis vinifera]              224   6e-57
ref|XP_002277600.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   224   6e-57

>ref|XP_003606390.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
           gi|355507445|gb|AES88587.1| DEAD-box ATP-dependent RNA
           helicase [Medicago truncatula]
          Length = 613

 Score =  238 bits (608), Expect = 3e-61
 Identities = 117/154 (75%), Positives = 130/154 (84%), Gaps = 2/154 (1%)
 Frame = -1

Query: 457 MGTKKRTQVIXXXXXXXXXXXXGTDKESRGDNS--VFASCSFSSLGLHPTLCDQLRERLG 284
           M  K + +V+              D  ++GDN+  VFASCSFSSLGLH TLCDQLRER+G
Sbjct: 4   MNKKTKAKVVKSKEKEKKKTTTHDDGTNKGDNNNNVFASCSFSSLGLHQTLCDQLRERMG 63

Query: 283 FEVPTLVQAQAIPVILSGRHALVNAATGTGKTVAYLAPIIHHLQSYDKRIQRSDGTYALV 104
           FE PTL+QAQAIPV+LSGRHALVNAATGTGKT+AYLAPIIHHLQSYDKR+QRSDGT+ALV
Sbjct: 64  FEAPTLIQAQAIPVVLSGRHALVNAATGTGKTIAYLAPIIHHLQSYDKRVQRSDGTFALV 123

Query: 103 LVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGE 2
           LVPTRELCLQV+EILQKLLHRFHWIVPGYIMGGE
Sbjct: 124 LVPTRELCLQVHEILQKLLHRFHWIVPGYIMGGE 157


>ref|XP_003533799.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
           17-like [Glycine max]
          Length = 596

 Score =  230 bits (586), Expect = 1e-58
 Identities = 117/152 (76%), Positives = 127/152 (83%)
 Frame = -1

Query: 457 MGTKKRTQVIXXXXXXXXXXXXGTDKESRGDNSVFASCSFSSLGLHPTLCDQLRERLGFE 278
           MG KK++Q +              +K +  +N VFASCSFSSLGL   LC+QLR+RLGFE
Sbjct: 1   MGAKKQSQGVK-------------NKGNGANNDVFASCSFSSLGLDSNLCEQLRDRLGFE 47

Query: 277 VPTLVQAQAIPVILSGRHALVNAATGTGKTVAYLAPIIHHLQSYDKRIQRSDGTYALVLV 98
           VPTLVQAQAIPVILSGRHALVNAATGTGKTVAYLAPIIHHLQ Y+ RIQRSDGT+ALVLV
Sbjct: 48  VPTLVQAQAIPVILSGRHALVNAATGTGKTVAYLAPIIHHLQGYENRIQRSDGTFALVLV 107

Query: 97  PTRELCLQVYEILQKLLHRFHWIVPGYIMGGE 2
           PTRELCLQVYEILQKLLHRFHWIVPGYIMGGE
Sbjct: 108 PTRELCLQVYEILQKLLHRFHWIVPGYIMGGE 139


>ref|XP_003547512.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
           17-like [Glycine max]
          Length = 591

 Score =  226 bits (577), Expect = 1e-57
 Identities = 114/127 (89%), Positives = 117/127 (92%), Gaps = 1/127 (0%)
 Frame = -1

Query: 379 ESRGDNS-VFASCSFSSLGLHPTLCDQLRERLGFEVPTLVQAQAIPVILSGRHALVNAAT 203
           E  G NS VFASCSFSSLGL   LC+QLRERLGFEVPTLVQAQAIPVILSGRHALVNAAT
Sbjct: 13  EGNGTNSDVFASCSFSSLGLESNLCEQLRERLGFEVPTLVQAQAIPVILSGRHALVNAAT 72

Query: 202 GTGKTVAYLAPIIHHLQSYDKRIQRSDGTYALVLVPTRELCLQVYEILQKLLHRFHWIVP 23
           GTGKTVAYLAPIIHHLQ Y+ RIQRSDGT+ALVLVPTRELCLQVYEILQKLLH FHWIVP
Sbjct: 73  GTGKTVAYLAPIIHHLQGYENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHWFHWIVP 132

Query: 22  GYIMGGE 2
           GYIMGGE
Sbjct: 133 GYIMGGE 139


>emb|CBI27769.3| unnamed protein product [Vitis vinifera]
          Length = 584

 Score =  224 bits (571), Expect = 6e-57
 Identities = 103/123 (83%), Positives = 117/123 (95%)
 Frame = -1

Query: 370 GDNSVFASCSFSSLGLHPTLCDQLRERLGFEVPTLVQAQAIPVILSGRHALVNAATGTGK 191
           G++ +FASCSFSSLGLHPTLCDQLRER+GFEVPT+VQA+AIPVIL+GRH LVNAATGTGK
Sbjct: 22  GESEIFASCSFSSLGLHPTLCDQLRERMGFEVPTIVQAEAIPVILAGRHVLVNAATGTGK 81

Query: 190 TVAYLAPIIHHLQSYDKRIQRSDGTYALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIM 11
           T+AYLAP+I+HL  YD RI+RS GT+ALVLVPTRELC+QVYEILQKLLHRFHWIVPGY+M
Sbjct: 82  TIAYLAPVINHLHKYDPRIERSAGTFALVLVPTRELCMQVYEILQKLLHRFHWIVPGYVM 141

Query: 10  GGE 2
           GGE
Sbjct: 142 GGE 144


>ref|XP_002277600.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 17-like [Vitis
           vinifera]
          Length = 600

 Score =  224 bits (571), Expect = 6e-57
 Identities = 103/123 (83%), Positives = 117/123 (95%)
 Frame = -1

Query: 370 GDNSVFASCSFSSLGLHPTLCDQLRERLGFEVPTLVQAQAIPVILSGRHALVNAATGTGK 191
           G++ +FASCSFSSLGLHPTLCDQLRER+GFEVPT+VQA+AIPVIL+GRH LVNAATGTGK
Sbjct: 22  GESEIFASCSFSSLGLHPTLCDQLRERMGFEVPTIVQAEAIPVILAGRHVLVNAATGTGK 81

Query: 190 TVAYLAPIIHHLQSYDKRIQRSDGTYALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIM 11
           T+AYLAP+I+HL  YD RI+RS GT+ALVLVPTRELC+QVYEILQKLLHRFHWIVPGY+M
Sbjct: 82  TIAYLAPVINHLHKYDPRIERSAGTFALVLVPTRELCMQVYEILQKLLHRFHWIVPGYVM 141

Query: 10  GGE 2
           GGE
Sbjct: 142 GGE 144


Top