BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00021859
         (811 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   330   2e-88
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   326   3e-87
ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like ...   315   6e-84
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   308   9e-82
ref|XP_003521320.1| PREDICTED: RNA polymerase-associated protein...   305   6e-81

>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score =  330 bits (846), Expect = 2e-88
 Identities = 182/274 (66%), Positives = 198/274 (72%), Gaps = 5/274 (1%)
 Frame = +3

Query: 3   SKREKVKKATVSREGTPPLPLXXXXXXXXXXXXXXXXXXXLNELRAKRLKQQDPETQRRL 182
           SKREK K A V R+ +PP+                     LNELRAKRLKQQDPE  RRL
Sbjct: 147 SKREKGKVA-VPRKQSPPMS-SSRMRASARSADRSAKNDALNELRAKRLKQQDPEAHRRL 204

Query: 183 REASRSAGPGHF-PPKGKPYASMGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRF-- 353
           REASR+AG  HF PPK KP+ S  L                               R   
Sbjct: 205 REASRNAGSRHFSPPKRKPFTSTSLSSSSHSESESRSHSDDEGSTGDGGIVDSDDDRALA 264

Query: 354 --EGPSFEDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPMYRLCMVKNVD 527
             EGPSF+D+KEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSK+GP+YRLCMVKNVD
Sbjct: 265 GSEGPSFQDVKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVD 324

Query: 528 ASDPDRQYKLENKTTYKYLNLVWGNDTSAARWQMAMVSDSAPLEEEFKQWVKEVERNGGW 707
           AS+PDRQYKLENKTTYKYLN+VWGN++SAARWQMAMVSDSAPLEEEFKQWVKEV+R+GG 
Sbjct: 325 ASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGR 384

Query: 708 MLMKRDVLEKKQAIQKINTFVYSAATVKQMLQEK 809
           M  K+DVLEKKQAIQK  TFVYSAATVKQMLQEK
Sbjct: 385 MPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEK 418


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 656

 Score =  326 bits (836), Expect = 3e-87
 Identities = 180/274 (65%), Positives = 196/274 (71%), Gaps = 5/274 (1%)
 Frame = +3

Query: 3   SKREKVKKATVSREGTPPLPLXXXXXXXXXXXXXXXXXXXLNELRAKRLKQQDPETQRRL 182
           SKREK  KA   R+ +PP+                     LNELRAKRLKQQDPE  RRL
Sbjct: 147 SKREK-GKAAAPRKQSPPMS-SSRMRASARSADRSAKNDALNELRAKRLKQQDPEAHRRL 204

Query: 183 REASRSAGPGHF-PPKGKPYASMGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRF-- 353
           REASR+AGP HF PPK K + S  L                               R   
Sbjct: 205 REASRNAGPRHFSPPKRKTFTSTSLSSSSHSESESRSHSDDEGSTGDGGIADSDDDRALA 264

Query: 354 --EGPSFEDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPMYRLCMVKNVD 527
             EGPSF+DIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSK+GP+YRLCMVKNVD
Sbjct: 265 GSEGPSFQDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVD 324

Query: 528 ASDPDRQYKLENKTTYKYLNLVWGNDTSAARWQMAMVSDSAPLEEEFKQWVKEVERNGGW 707
           AS+PDRQYKLENKTTYKYLN+VWGN++SAARWQMAMVSDSAP+EEEFKQWVKEV+ +GG 
Sbjct: 325 ASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPMEEEFKQWVKEVDCSGGR 384

Query: 708 MLMKRDVLEKKQAIQKINTFVYSAATVKQMLQEK 809
           M  K+DVLEKKQAIQK  TFVYSAATVKQMLQEK
Sbjct: 385 MPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEK 418


>ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like protein [Medicago
           truncatula] gi|355500443|gb|AES81646.1| RNA
           polymerase-associated protein RTF1-like protein
           [Medicago truncatula]
          Length = 624

 Score =  315 bits (808), Expect = 6e-84
 Identities = 172/271 (63%), Positives = 187/271 (69%), Gaps = 2/271 (0%)
 Frame = +3

Query: 3   SKREKVKKATVSREGTPPLPLXXXXXXXXXXXXXXXXXXXLNELRAKRLKQQDPETQRRL 182
           SKREK     VSR  TPPLP                    LNELRAKRLKQ+DPETQR L
Sbjct: 125 SKREK---GNVSRRETPPLPSSRMMSSTRSYDRSAAKDGALNELRAKRLKQRDPETQREL 181

Query: 183 REASRSAGPGHFPPKGKPYASMGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--FE 356
           +E S+SAG G     GKP  S                                     FE
Sbjct: 182 KEGSKSAGSGVLSKIGKPNFSSSSHSESESRSRSDEDVEGLSEGEGIIDSNDDKIMPGFE 241

Query: 357 GPSFEDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPMYRLCMVKNVDASD 536
            PSFEDI++ITI RSKL KWFMEPFFEELIVGCFVRVGIGRSK+GP+YRLCMVKNVDASD
Sbjct: 242 KPSFEDIQDITIPRSKLTKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASD 301

Query: 537 PDRQYKLENKTTYKYLNLVWGNDTSAARWQMAMVSDSAPLEEEFKQWVKEVERNGGWMLM 716
           PDR YKL+NKTTYKYLN+VWGN+TSAARWQMAMVSDS PLEEEFKQWVKEVER+GG ML 
Sbjct: 302 PDRLYKLDNKTTYKYLNVVWGNETSAARWQMAMVSDSPPLEEEFKQWVKEVERSGGRMLK 361

Query: 717 KRDVLEKKQAIQKINTFVYSAATVKQMLQEK 809
           + DV+EKKQA+ KIN FVYSAATVKQML+EK
Sbjct: 362 RLDVVEKKQAMLKINNFVYSAATVKQMLEEK 392


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
           sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
           polymerase-associated protein RTF1 homolog [Cucumis
           sativus]
          Length = 660

 Score =  308 bits (789), Expect = 9e-82
 Identities = 165/275 (60%), Positives = 193/275 (70%), Gaps = 6/275 (2%)
 Frame = +3

Query: 3   SKREKVKKATVSREGTPPLPLXXXXXXXXXXXXXXXXXXXLNELRAKRLKQQDPETQRRL 182
           +K +K K A  SR+ TPPLP                    LNELRAKRLKQQDPE  R+L
Sbjct: 148 AKMDKGKSAP-SRKETPPLPSSRIRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKL 206

Query: 183 REASR-SAGPGHFPP-KGKPYASMGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRF- 353
           R+ASR +A    F P K KP+ +  L                               R  
Sbjct: 207 RDASRGNANSRRFSPTKRKPFTAPSLSSSSQSESESRFQSDDEGSTGDGGMIDSDDERSI 266

Query: 354 ---EGPSFEDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPMYRLCMVKNV 524
              +GP+FEDIKE+TIRRSKLAKW MEPFFEELIVGCFVRVGIGRS+SGP+YRLC+V+NV
Sbjct: 267 PGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNV 326

Query: 525 DASDPDRQYKLENKTTYKYLNLVWGNDTSAARWQMAMVSDSAPLEEEFKQWVKEVERNGG 704
           DA++PDRQYKLENK T+KYLN++WGN+ SAARWQMAMVSDSAPLE+E+KQWVKEVER GG
Sbjct: 327 DATEPDRQYKLENKITHKYLNVIWGNEASAARWQMAMVSDSAPLEDEYKQWVKEVERTGG 386

Query: 705 WMLMKRDVLEKKQAIQKINTFVYSAATVKQMLQEK 809
            ML K+D+LEKK+AIQK+N FVYSAATVKQMLQ+K
Sbjct: 387 RMLSKQDILEKKEAIQKVNNFVYSAATVKQMLQDK 421


>ref|XP_003521320.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
           max]
          Length = 644

 Score =  305 bits (782), Expect = 6e-81
 Identities = 169/271 (62%), Positives = 184/271 (67%), Gaps = 2/271 (0%)
 Frame = +3

Query: 3   SKREKVKKATVSREGTPPLPLXXXXXXXXXXXXXXXXXXXLNELRAKRLKQQDPETQRRL 182
           SKREK KK TV+ + T PLP                    LNELRAKRLKQQD E  RR 
Sbjct: 140 SKREKGKK-TVAGKQTSPLPPSRVRSSARSADRSTAKDGALNELRAKRLKQQDSEANRRP 198

Query: 183 REASRSAGPGHFPPKGKPYASMGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRF--E 356
            EASRS+GPGHF PK KP+ ++                                     E
Sbjct: 199 SEASRSSGPGHFSPKHKPFPNLSSSSDSETESKSLSDNEGLSDDDRIIDSDDDRIMLGSE 258

Query: 357 GPSFEDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPMYRLCMVKNVDASD 536
           G SFEDIKEITIRRSKLAKWFMEPFFEELI  CFVRVGIGR KSGP+YRLCMVKNVDA+D
Sbjct: 259 GLSFEDIKEITIRRSKLAKWFMEPFFEELIADCFVRVGIGRPKSGPIYRLCMVKNVDATD 318

Query: 537 PDRQYKLENKTTYKYLNLVWGNDTSAARWQMAMVSDSAPLEEEFKQWVKEVERNGGWMLM 716
             RQYKLENKTT+KYLNLVWGN+TSAARWQMAM+S+S P EEEF QWVKEVER GG M  
Sbjct: 319 RARQYKLENKTTHKYLNLVWGNETSAARWQMAMISNSPPKEEEFIQWVKEVERRGGRMPT 378

Query: 717 KRDVLEKKQAIQKINTFVYSAATVKQMLQEK 809
           K++V EKK+AI K N FVYSAATVKQMLQEK
Sbjct: 379 KQEVAEKKEAILKTNLFVYSAATVKQMLQEK 409