BLASTX nr result

ID: Glycyrrhiza23_contig00021791 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00021791
         (288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003599197.1| F-box family protein [Medicago truncatula] g...   111   5e-23
ref|XP_002313690.1| f-box family protein [Populus trichocarpa] g...    97   1e-18
ref|XP_002305539.1| f-box family protein [Populus trichocarpa] g...    96   3e-18
ref|XP_003537158.1| PREDICTED: F-box protein SKIP23-like [Glycin...    92   6e-17
ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protei...    91   1e-16

>ref|XP_003599197.1| F-box family protein [Medicago truncatula]
           gi|355488245|gb|AES69448.1| F-box family protein
           [Medicago truncatula]
          Length = 423

 Score =  111 bits (278), Expect = 5e-23
 Identities = 54/99 (54%), Positives = 73/99 (73%), Gaps = 3/99 (3%)
 Frame = -1

Query: 288 PHVLDFNHLRVSDLGPEFVLGHSPPLSPNTSLYMEKVV---AATWQGKQQGPDFALLTIH 118
           P V++FN  RV DLG EFV+G+    +  +SLYMEKV+   A  W GK++     L TIH
Sbjct: 141 PQVINFNEHRVIDLGREFVIGN---FNEYSSLYMEKVIVLDADMWGGKERCS--VLFTIH 195

Query: 117 VSGKLALFRSGDDRWTVIPDMPAPYDDVCIFRGRPCAVD 1
           +SGK+A FR GD+RWT++P+MP+P+DDVC+F+GRP AVD
Sbjct: 196 ISGKIAFFRCGDERWTIVPEMPSPFDDVCVFKGRPVAVD 234


>ref|XP_002313690.1| f-box family protein [Populus trichocarpa]
           gi|222850098|gb|EEE87645.1| f-box family protein
           [Populus trichocarpa]
          Length = 410

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 54/103 (52%), Positives = 70/103 (67%), Gaps = 7/103 (6%)
 Frame = -1

Query: 288 PHVLDFNHLRVSDLGPEFVLGHSPPLSPNTS-------LYMEKVVAATWQGKQQGPDFAL 130
           P VLD  +LR+ +LG E+VL H     PN+S       LYMEKVV   W   +   +F L
Sbjct: 121 PRVLDLMNLRIRELGHEYVL-HHVSYKPNSSSFTDAGNLYMEKVVMI-WLNCET--EFVL 176

Query: 129 LTIHVSGKLALFRSGDDRWTVIPDMPAPYDDVCIFRGRPCAVD 1
           LTIHVSGKLA+F+SGD RWT+I +MP+P+DDV +++GR  AVD
Sbjct: 177 LTIHVSGKLAMFKSGDKRWTIINEMPSPFDDVIVYKGRFYAVD 219


>ref|XP_002305539.1| f-box family protein [Populus trichocarpa]
           gi|222848503|gb|EEE86050.1| f-box family protein
           [Populus trichocarpa]
          Length = 469

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 54/103 (52%), Positives = 69/103 (66%), Gaps = 7/103 (6%)
 Frame = -1

Query: 288 PHVLDFNHLRVSDLGPEFVLGHSPPLSPNTS-------LYMEKVVAATWQGKQQGPDFAL 130
           P VLD  +LR+ +LG E+VL H     PN+S       LYMEKVV   W       +F L
Sbjct: 121 PRVLDLMNLRIRELGHEYVLHHLN-YKPNSSSFTDAGNLYMEKVVMI-WLNSLT--EFVL 176

Query: 129 LTIHVSGKLALFRSGDDRWTVIPDMPAPYDDVCIFRGRPCAVD 1
           LTIHVSGKLA+F+SGD RWT+I +MP+P+DDV +++GR  AVD
Sbjct: 177 LTIHVSGKLAIFKSGDKRWTIINEMPSPFDDVIVYKGRFYAVD 219


>ref|XP_003537158.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
          Length = 368

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 51/93 (54%), Positives = 61/93 (65%)
 Frame = -1

Query: 279 LDFNHLRVSDLGPEFVLGHSPPLSPNTSLYMEKVVAATWQGKQQGPDFALLTIHVSGKLA 100
           LD   L   DLG EF+L ++       SLY+EK+V      ++    FALLTIHVSGKLA
Sbjct: 111 LDLFTLPALDLGREFLLTNTR--HTRDSLYIEKLVFLPLTHRKDR--FALLTIHVSGKLA 166

Query: 99  LFRSGDDRWTVIPDMPAPYDDVCIFRGRPCAVD 1
           LFRSG+D WTVIPDMP PYDDVC+F+G     D
Sbjct: 167 LFRSGEDGWTVIPDMPTPYDDVCVFKGNLYGAD 199


>ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Vitis
           vinifera]
          Length = 387

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 51/100 (51%), Positives = 62/100 (62%), Gaps = 4/100 (4%)
 Frame = -1

Query: 288 PHVLDFNHLRVSDLGPEFVLGHSPPLSPNT----SLYMEKVVAATWQGKQQGPDFALLTI 121
           P   DF+ LRV +LG E+VL +     P      SLYMEKV   +  G     DF LLTI
Sbjct: 120 PKTFDFSGLRVFELGQEYVLEYMDYRPPGNAYLGSLYMEKVAFCSGNGD----DFWLLTI 175

Query: 120 HVSGKLALFRSGDDRWTVIPDMPAPYDDVCIFRGRPCAVD 1
           H+SGKLA+FRSGD +W +I DM +PYDDV  F G+  AVD
Sbjct: 176 HLSGKLAMFRSGDKKWMIIDDMQSPYDDVIFFDGKFYAVD 215


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