BLASTX nr result

ID: Glycyrrhiza23_contig00021516 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00021516
         (857 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK38661.1| unknown [Lotus japonicus]                              168   1e-39
ref|XP_003607204.1| U11/U12 small nuclear ribonucleoprotein 25 k...   164   3e-38
ref|XP_003538972.1| PREDICTED: U11/U12 small nuclear ribonucleop...   163   5e-38
ref|XP_003537786.1| PREDICTED: U11/U12 small nuclear ribonucleop...   163   5e-38
ref|XP_003537785.1| PREDICTED: U11/U12 small nuclear ribonucleop...   163   5e-38

>gb|AFK38661.1| unknown [Lotus japonicus]
          Length = 163

 Score =  168 bits (426), Expect = 1e-39
 Identities = 89/142 (62%), Positives = 94/142 (66%)
 Frame = +1

Query: 61  LLDDPVLADVPKNPTLADVDTLIGLELGSAMRISIVKLDSTSFDVTVMNSATXXXXXXXX 240
           LLDDP+L+DVPKNPTL DVDTLIGLELGSAMRISI+KLD+TSFDVTVMNSAT        
Sbjct: 21  LLDDPILSDVPKNPTLYDVDTLIGLELGSAMRISIIKLDATSFDVTVMNSATVKDLKLAI 80

Query: 241 XXXXNDMEQSRMGHRHISWRSVWANYCLSCXXXXXXXXXXXXXXYGVRNNSQVHFVPYVM 420
               NDMEQS MGHR ISWR VWA  CLS               +GVRNNSQVHFVPYVM
Sbjct: 81  KKKVNDMEQSNMGHRQISWRGVWAKCCLSYNNHKLLNDDDALQNFGVRNNSQVHFVPYVM 140

Query: 421 TKEXXXXXXXXXXXXXXXLNKL 486
           TKE               LNKL
Sbjct: 141 TKESRSHSTRRKHRFFHGLNKL 162


>ref|XP_003607204.1| U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Medicago
           truncatula] gi|355508259|gb|AES89401.1| U11/U12 small
           nuclear ribonucleoprotein 25 kDa protein [Medicago
           truncatula]
          Length = 162

 Score =  164 bits (414), Expect = 3e-38
 Identities = 86/142 (60%), Positives = 96/142 (67%)
 Frame = +1

Query: 4   EYKSGXXXXXXXXXXXXXXLLDDPVLADVPKNPTLADVDTLIGLELGSAMRISIVKLDST 183
           EYKSG              LL+DP+LADVPKNPTL DV+TLIGLELGSAMRI+++KLD+T
Sbjct: 6   EYKSGLKKAKVLKA-----LLEDPILADVPKNPTLEDVETLIGLELGSAMRITVLKLDTT 60

Query: 184 SFDVTVMNSATXXXXXXXXXXXXNDMEQSRMGHRHISWRSVWANYCLSCXXXXXXXXXXX 363
           SFDV +MN+AT            N MEQS MGHRHISWRSVWANYCLS            
Sbjct: 61  SFDVILMNTATLKDLKLAIKKKVNYMEQSSMGHRHISWRSVWANYCLSFDNNKLLNDDDV 120

Query: 364 XXXYGVRNNSQVHFVPYVMTKE 429
               GVRNNSQ+HFVPYVMTKE
Sbjct: 121 LQNLGVRNNSQIHFVPYVMTKE 142


>ref|XP_003538972.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
           protein-like [Glycine max]
          Length = 187

 Score =  163 bits (412), Expect = 5e-38
 Identities = 81/123 (65%), Positives = 88/123 (71%)
 Frame = +1

Query: 61  LLDDPVLADVPKNPTLADVDTLIGLELGSAMRISIVKLDSTSFDVTVMNSATXXXXXXXX 240
           LLDDP+L+DVPKNPT ADVDTLI LELGSAMRIS++KLD T+ DV VMNSAT        
Sbjct: 45  LLDDPILSDVPKNPTFADVDTLINLELGSAMRISVLKLDGTTLDVIVMNSATVKDLKLAI 104

Query: 241 XXXXNDMEQSRMGHRHISWRSVWANYCLSCXXXXXXXXXXXXXXYGVRNNSQVHFVPYVM 420
               NDMEQS MGHRHISW+ VWANYCLSC              +GVRNNSQV FV YVM
Sbjct: 105 KKKVNDMEQSSMGHRHISWKHVWANYCLSCHNNKLLDDNEALQNFGVRNNSQVQFVSYVM 164

Query: 421 TKE 429
           TKE
Sbjct: 165 TKE 167


>ref|XP_003537786.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
           protein-like isoform 2 [Glycine max]
          Length = 190

 Score =  163 bits (412), Expect = 5e-38
 Identities = 81/123 (65%), Positives = 88/123 (71%)
 Frame = +1

Query: 61  LLDDPVLADVPKNPTLADVDTLIGLELGSAMRISIVKLDSTSFDVTVMNSATXXXXXXXX 240
           LLDDP+L+DVPKNPT ADVDTLI LELGSAMRIS++KLD T+ DV VMNSAT        
Sbjct: 48  LLDDPILSDVPKNPTFADVDTLINLELGSAMRISVLKLDGTTLDVIVMNSATVKDLKLAI 107

Query: 241 XXXXNDMEQSRMGHRHISWRSVWANYCLSCXXXXXXXXXXXXXXYGVRNNSQVHFVPYVM 420
               NDMEQS MGHRHISW+ VWANYCLSC              +GVRNNSQV FV YVM
Sbjct: 108 KKKVNDMEQSSMGHRHISWKHVWANYCLSCHNNKLLDDNEALQNFGVRNNSQVQFVSYVM 167

Query: 421 TKE 429
           TKE
Sbjct: 168 TKE 170


>ref|XP_003537785.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa
           protein-like isoform 1 [Glycine max]
          Length = 163

 Score =  163 bits (412), Expect = 5e-38
 Identities = 81/123 (65%), Positives = 88/123 (71%)
 Frame = +1

Query: 61  LLDDPVLADVPKNPTLADVDTLIGLELGSAMRISIVKLDSTSFDVTVMNSATXXXXXXXX 240
           LLDDP+L+DVPKNPT ADVDTLI LELGSAMRIS++KLD T+ DV VMNSAT        
Sbjct: 21  LLDDPILSDVPKNPTFADVDTLINLELGSAMRISVLKLDGTTLDVIVMNSATVKDLKLAI 80

Query: 241 XXXXNDMEQSRMGHRHISWRSVWANYCLSCXXXXXXXXXXXXXXYGVRNNSQVHFVPYVM 420
               NDMEQS MGHRHISW+ VWANYCLSC              +GVRNNSQV FV YVM
Sbjct: 81  KKKVNDMEQSSMGHRHISWKHVWANYCLSCHNNKLLDDNEALQNFGVRNNSQVQFVSYVM 140

Query: 421 TKE 429
           TKE
Sbjct: 141 TKE 143


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