BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00021413
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003555072.1| PREDICTED: cleavage stimulation factor subun...   175   3e-42
ref|XP_003618920.1| mRNA 3'-end-processing protein rna14 [Medica...   167   6e-40
ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subun...   123   1e-26
ref|XP_002303484.1| predicted protein [Populus trichocarpa] gi|2...   123   2e-26
ref|XP_002519397.1| plant RNA cleavage stimulation factor, putat...   114   8e-24

>ref|XP_003555072.1| PREDICTED: cleavage stimulation factor subunit 3-like [Glycine max]
          Length = 832

 Score =  175 bits (444), Expect = 3e-42
 Identities = 98/141 (69%), Positives = 102/141 (72%), Gaps = 23/141 (16%)
 Frame = +1

Query: 1    KMVIYDPKHNP------------------VTGAGTNAFDEILKATPPALVAFLANLPAVE 126
            KMVIYDPKH P                  V GAGTNAFDEILKATPPALV+FLANLPAVE
Sbjct: 632  KMVIYDPKHTPGRCGKPKEHLGPCLIQLLVAGAGTNAFDEILKATPPALVSFLANLPAVE 691

Query: 127  GPTPNVDIVLSICLQSDLPIGQSEKTGIPAQLSSGKTGITTQLPAG----PATSELSGSN 294
            GP PNVDIVLSICLQSDLP GQS KTGIP Q+ SGK GI   LPAG     A SELSGS+
Sbjct: 692  GPMPNVDIVLSICLQSDLPTGQSVKTGIPTQVQSGKAGIPALLPAGSAPAAAASELSGSS 751

Query: 295  KSHPVRS-GLSLKPTSNRQYG 354
            KSHP  S G+SLKP SNRQYG
Sbjct: 752  KSHPAPSGGVSLKPGSNRQYG 772


>ref|XP_003618920.1| mRNA 3'-end-processing protein rna14 [Medicago truncatula]
           gi|355493935|gb|AES75138.1| mRNA 3'-end-processing
           protein rna14 [Medicago truncatula]
          Length = 737

 Score =  167 bits (424), Expect = 6e-40
 Identities = 90/119 (75%), Positives = 98/119 (82%), Gaps = 1/119 (0%)
 Frame = +1

Query: 1   KMVIYDPKHNPVTGA-GTNAFDEILKATPPALVAFLANLPAVEGPTPNVDIVLSICLQSD 177
           KM+IYDPKHNP TGA GTNAFDEILKATPPALVAFLANLP+V+GPTPNVDIVLSICLQSD
Sbjct: 568 KMLIYDPKHNPGTGAAGTNAFDEILKATPPALVAFLANLPSVDGPTPNVDIVLSICLQSD 627

Query: 178 LPIGQSEKTGIPAQLSSGKTGITTQLPAGPATSELSGSNKSHPVRSGLSLKPTSNRQYG 354
           LP GQS K GIP+QL +G        PA PATSELSGS+KSHPV+SGLS      +QYG
Sbjct: 628 LPTGQSVKVGIPSQLPAG--------PA-PATSELSGSSKSHPVQSGLSHMQPGRKQYG 677


>ref|XP_002265193.1| PREDICTED: cleavage stimulation factor subunit 3 [Vitis vinifera]
           gi|297736046|emb|CBI24084.3| unnamed protein product
           [Vitis vinifera]
          Length = 769

 Score =  123 bits (309), Expect = 1e-26
 Identities = 74/147 (50%), Positives = 92/147 (62%), Gaps = 29/147 (19%)
 Frame = +1

Query: 1   KMVIYDPKHNPVTGA-------------GT--------------NAFDEILKATPPALVA 99
           +MV+YDP+  P TGA             GT              N  DEILK+TPPALVA
Sbjct: 577 QMVVYDPRQKPGTGALPSTTAPVLPSISGTLSNPSVPMVSSRPANPLDEILKSTPPALVA 636

Query: 100 FLANLPAVEGPTPNVDIVLSICLQSDLPIGQSEKTGIPAQLSSGKTGITTQLPAG--PAT 273
           F+ANLPAVEGP+P+VD+VLSICLQS+              +S+G+TG++TQL AG  P+T
Sbjct: 637 FIANLPAVEGPSPDVDVVLSICLQSN--------------VSTGQTGLSTQLAAGPVPST 682

Query: 274 SELSGSNKSHPVRSGLSLKPTSNRQYG 354
           S+LSGS+KSHPV SG S KP  +RQ G
Sbjct: 683 SDLSGSSKSHPVPSGSSFKPMRDRQPG 709


>ref|XP_002303484.1| predicted protein [Populus trichocarpa] gi|222840916|gb|EEE78463.1|
           predicted protein [Populus trichocarpa]
          Length = 769

 Score =  123 bits (308), Expect = 2e-26
 Identities = 68/115 (59%), Positives = 83/115 (72%), Gaps = 2/115 (1%)
 Frame = +1

Query: 16  DPKHNPVTGAGTNAFDEILKATPPALVAFLANLPAVEGPTPNVDIVLSICLQSDLPIGQS 195
           +P  NP+ G   N FDE+LKATPPAL++FLANLP VEGP PNVDIVLSICLQSD+P+G++
Sbjct: 608 NPLSNPI-GLAPNVFDEVLKATPPALISFLANLPVVEGPAPNVDIVLSICLQSDVPVGKT 666

Query: 196 EKTGIPAQLSSGKTGITTQLP--AGPATSELSGSNKSHPVRSGLSLKPTSNRQYG 354
            K+G            TTQ P  +GPATS+LSGS++S PV SG S K T +RQ G
Sbjct: 667 GKSG------------TTQTPMLSGPATSDLSGSSRSRPVPSGSSFK-TRDRQSG 708


>ref|XP_002519397.1| plant RNA cleavage stimulation factor, putative [Ricinus communis]
           gi|223541464|gb|EEF43014.1| plant RNA cleavage
           stimulation factor, putative [Ricinus communis]
          Length = 767

 Score =  114 bits (285), Expect = 8e-24
 Identities = 63/107 (58%), Positives = 73/107 (68%)
 Frame = +1

Query: 34  VTGAGTNAFDEILKATPPALVAFLANLPAVEGPTPNVDIVLSICLQSDLPIGQSEKTGIP 213
           + G+G NAFDEILKATPPAL++FL+ LP VEGPTPNVDIVLSICLQS+L  GQ  K G  
Sbjct: 615 LVGSGANAFDEILKATPPALISFLSTLPTVEGPTPNVDIVLSICLQSELTNGQMGKLG-- 672

Query: 214 AQLSSGKTGITTQLPAGPATSELSGSNKSHPVRSGLSLKPTSNRQYG 354
                  T      P  PATS+LSGS+KS PV     LKP+ +RQ G
Sbjct: 673 -------TSPAVPAPPAPATSDLSGSSKSRPV-----LKPSRDRQSG 707