BLASTX nr result

ID: Glycyrrhiza23_contig00021175 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00021175
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003523657.1| PREDICTED: endoribonuclease Dicer homolog 3a...   168   5e-40
ref|XP_003603236.1| Endoribonuclease Dicer-like protein [Medicag...   164   5e-39
ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonucl...   124   1e-26
emb|CBI20740.3| unnamed protein product [Vitis vinifera]              122   3e-26
ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a...   119   2e-25

>ref|XP_003523657.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Glycine max]
          Length = 1671

 Score =  168 bits (425), Expect = 5e-40
 Identities = 78/101 (77%), Positives = 91/101 (90%)
 Frame = -2

Query: 377  SINMNKGGPRIQLYELCKKMQWPLPAFDSTEHKDRTLFGSCEELEGSKGQNCFVSKITLC 198
            SINM KGGPR  LYE+CKK+QWP+P FDSTE+KDR+LF SCE L+GSKGQNCFVSKITLC
Sbjct: 1566 SINMKKGGPRTTLYEVCKKLQWPVPTFDSTEYKDRSLFESCEGLQGSKGQNCFVSKITLC 1625

Query: 197  IPNDGNVECKGEARSDKKSSYDSAAVKILYELQRRGKLKID 75
            IPN GN+E KGEARSDKK+S+DSAAV++L ELQR GK++ID
Sbjct: 1626 IPNYGNIESKGEARSDKKTSFDSAAVQMLLELQRLGKVEID 1666


>ref|XP_003603236.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
            gi|355492284|gb|AES73487.1| Endoribonuclease Dicer-like
            protein [Medicago truncatula]
          Length = 1758

 Score =  164 bits (416), Expect = 5e-39
 Identities = 81/107 (75%), Positives = 93/107 (86%), Gaps = 1/107 (0%)
 Frame = -2

Query: 395  SIPVISSINMNK-GGPRIQLYELCKKMQWPLPAFDSTEHKDRTLFGSCEELEGSKGQNCF 219
            SIPV+SSI MNK GGPR +LYE+CKK  WPLP+FDSTE+KDRTLF SC+ LEGSKG NCF
Sbjct: 1625 SIPVVSSIKMNKKGGPRSELYEVCKKKLWPLPSFDSTEYKDRTLFESCKGLEGSKGLNCF 1684

Query: 218  VSKITLCIPNDGNVECKGEARSDKKSSYDSAAVKILYELQRRGKLKI 78
            VSKITL IP  G+++C+GEARSDKKSSYDSAAV+ LYELQR GK+ I
Sbjct: 1685 VSKITLGIPGYGDIKCQGEARSDKKSSYDSAAVQALYELQRLGKIMI 1731


>ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
            3a-like [Cucumis sativus]
          Length = 1639

 Score =  124 bits (310), Expect = 1e-26
 Identities = 60/105 (57%), Positives = 79/105 (75%)
 Frame = -2

Query: 389  PVISSINMNKGGPRIQLYELCKKMQWPLPAFDSTEHKDRTLFGSCEELEGSKGQNCFVSK 210
            PVI  IN+ KGGPR  L+ELCKK+QWP+P F++ E+K R      E LE  KG N F+S 
Sbjct: 1533 PVIGPINLKKGGPRSTLFELCKKLQWPMPTFNTVENKSRVQIEIGEGLEKRKGFNSFLSN 1592

Query: 209  ITLCIPNDGNVECKGEARSDKKSSYDSAAVKILYELQRRGKLKID 75
            ITL IPN G VEC+GEAR+DKKSS+DSA++ +L ELQ++G++ I+
Sbjct: 1593 ITLQIPNAGYVECEGEARADKKSSFDSASLVMLQELQQQGRVIIN 1637


>emb|CBI20740.3| unnamed protein product [Vitis vinifera]
          Length = 1688

 Score =  122 bits (306), Expect = 3e-26
 Identities = 63/106 (59%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
 Frame = -2

Query: 389  PVISSINMNKGGPRIQLYELCKKMQWPLPAFDSTEHKDR--TLFGSCEELEGSKGQNCFV 216
            PVI SINM KGGPR  LYELCK++QWP+P+F+S E + R   +FG  E  E  +G N F+
Sbjct: 1583 PVIKSINMKKGGPRSSLYELCKRLQWPMPSFESKEQRSRFPIIFG--EGSERREGFNSFI 1640

Query: 215  SKITLCIPNDGNVECKGEARSDKKSSYDSAAVKILYELQRRGKLKI 78
            S I+L IPN G +EC+G+ R+DKKSS DSAA+ +L+ELQRRGKL I
Sbjct: 1641 SSISLHIPNCGVMECRGDHRADKKSSLDSAALVMLHELQRRGKLII 1686


>ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a-like [Vitis vinifera]
          Length = 1648

 Score =  119 bits (299), Expect = 2e-25
 Identities = 62/105 (59%), Positives = 79/105 (75%), Gaps = 2/105 (1%)
 Frame = -2

Query: 386  VISSINMNKGGPRIQLYELCKKMQWPLPAFDSTEHKDR--TLFGSCEELEGSKGQNCFVS 213
            VI SINM KGGPR  LYELCK++QWP+P+F+S E + R   +FG  E  E  +G N F+S
Sbjct: 1544 VIKSINMKKGGPRSSLYELCKRLQWPMPSFESKEQRSRFPIIFG--EGSERREGFNSFIS 1601

Query: 212  KITLCIPNDGNVECKGEARSDKKSSYDSAAVKILYELQRRGKLKI 78
             I+L IPN G +EC+G+ R+DKKSS DSAA+ +L+ELQRRGKL I
Sbjct: 1602 SISLHIPNCGVMECRGDHRADKKSSLDSAALVMLHELQRRGKLII 1646


Top