BLASTX nr result

ID: Glycyrrhiza23_contig00021101 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00021101
         (427 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518495.1| PREDICTED: probable ATP-dependent RNA helica...   192   3e-47
ref|XP_003545153.1| PREDICTED: probable ATP-dependent RNA helica...   187   8e-46
ref|XP_003617330.1| ATP-dependent RNA helicase A-like protein [M...   148   5e-34
ref|XP_002520395.1| ATP-dependent RNA helicase, putative [Ricinu...   135   5e-30
ref|XP_002307569.1| predicted protein [Populus trichocarpa] gi|2...   123   2e-26

>ref|XP_003518495.1| PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Glycine
           max]
          Length = 1162

 Score =  192 bits (487), Expect = 3e-47
 Identities = 98/133 (73%), Positives = 107/133 (80%)
 Frame = +2

Query: 29  TMTRRREKKGDALQLHRQNPKVDEVTRIRITQILEQFRASKDEVYKFDAGLSNQERAFVH 208
           T  +R +KKG+ L   RQNP VDEVTRIRI+QILE FRAS DEVYKFDA LSNQERA VH
Sbjct: 5   TKNKREKKKGEPL--FRQNPNVDEVTRIRISQILEHFRASNDEVYKFDADLSNQERALVH 62

Query: 209 QLSQKMGLRSKSYGLGNERRVSVQKIKKKVDIDNEFDSLPHFMFSEESKRVLGDLFAHYP 388
           Q++ KMG RSKSYGLG ERRV VQK+KKKVD DN F SLP F FS E+K VLGDLFAHYP
Sbjct: 63  QMALKMGFRSKSYGLGKERRVCVQKMKKKVDTDNGFGSLPQFTFSGEAKWVLGDLFAHYP 122

Query: 389 PGDGNLLETIGEN 427
           PGDGN  E +GEN
Sbjct: 123 PGDGNSWEMVGEN 135


>ref|XP_003545153.1| PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Glycine
           max]
          Length = 1164

 Score =  187 bits (475), Expect = 8e-46
 Identities = 96/127 (75%), Positives = 106/127 (83%)
 Frame = +2

Query: 47  EKKGDALQLHRQNPKVDEVTRIRITQILEQFRASKDEVYKFDAGLSNQERAFVHQLSQKM 226
           +KKG+ L   RQNP VDEVTRI I+QILEQFRAS DEVYKFDAGLSNQERA VHQ++ KM
Sbjct: 12  KKKGEPL--FRQNPNVDEVTRICISQILEQFRASNDEVYKFDAGLSNQERALVHQMALKM 69

Query: 227 GLRSKSYGLGNERRVSVQKIKKKVDIDNEFDSLPHFMFSEESKRVLGDLFAHYPPGDGNL 406
           G RSKSYGLG ERRV VQK+KKKVD DN F SLP F FS E+K VLGDLFAH+PPG+GNL
Sbjct: 70  GFRSKSYGLGKERRVCVQKMKKKVDTDNGFGSLPPFTFSGEAKWVLGDLFAHHPPGEGNL 129

Query: 407 LETIGEN 427
            E +GEN
Sbjct: 130 WEMVGEN 136


>ref|XP_003617330.1| ATP-dependent RNA helicase A-like protein [Medicago truncatula]
           gi|355518665|gb|AET00289.1| ATP-dependent RNA helicase
           A-like protein [Medicago truncatula]
          Length = 1190

 Score =  148 bits (373), Expect = 5e-34
 Identities = 71/131 (54%), Positives = 95/131 (72%)
 Frame = +2

Query: 32  MTRRREKKGDALQLHRQNPKVDEVTRIRITQILEQFRASKDEVYKFDAGLSNQERAFVHQ 211
           ++ ++  K    + + Q  K+DE TR RI + LE F++S +E YKF+AGLSN +R F H 
Sbjct: 4   VSNKKANKLARFKKYAQPTKIDESTRRRIIRTLESFQSSDEEEYKFEAGLSNDDRRFAHL 63

Query: 212 LSQKMGLRSKSYGLGNERRVSVQKIKKKVDIDNEFDSLPHFMFSEESKRVLGDLFAHYPP 391
           L+QKMG +SKSYG G ERR+SV+K  KK   DN+  +LPHF FSEE+KR +GDLFAH+PP
Sbjct: 64  LAQKMGFKSKSYGTGKERRLSVRKGNKKGGSDNQSANLPHFTFSEEAKRAMGDLFAHFPP 123

Query: 392 GDGNLLETIGE 424
           GDGNL + +GE
Sbjct: 124 GDGNLKDMVGE 134


>ref|XP_002520395.1| ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223540442|gb|EEF42011.1| ATP-dependent RNA helicase,
           putative [Ricinus communis]
          Length = 1229

 Score =  135 bits (339), Expect = 5e-30
 Identities = 69/125 (55%), Positives = 94/125 (75%)
 Frame = +2

Query: 32  MTRRREKKGDALQLHRQNPKVDEVTRIRITQILEQFRASKDEVYKFDAGLSNQERAFVHQ 211
           M ++R+KK +     + NP V E TRIRI+QILEQFRA+KD+V+ F+A LSN+ERA VH+
Sbjct: 1   MGKKRQKKAE-----QGNPNVAEATRIRISQILEQFRAAKDQVFTFEANLSNRERAVVHE 55

Query: 212 LSQKMGLRSKSYGLGNERRVSVQKIKKKVDIDNEFDSLPHFMFSEESKRVLGDLFAHYPP 391
           + +K+G++SKS G G++RRVS+ KI +K D  N  +SL +  FSEESK VL +LFA+YPP
Sbjct: 56  VCKKLGMKSKSTGRGHQRRVSIYKIIQKADTGNGKESLTNLTFSEESKLVLQELFAYYPP 115

Query: 392 GDGNL 406
            DG L
Sbjct: 116 EDGEL 120


>ref|XP_002307569.1| predicted protein [Populus trichocarpa] gi|222857018|gb|EEE94565.1|
           predicted protein [Populus trichocarpa]
          Length = 1195

 Score =  123 bits (308), Expect = 2e-26
 Identities = 62/117 (52%), Positives = 84/117 (71%)
 Frame = +2

Query: 50  KKGDALQLHRQNPKVDEVTRIRITQILEQFRASKDEVYKFDAGLSNQERAFVHQLSQKMG 229
           KK       +QNP+V E T IRI++ILE+FRA+ D+VY F+A LSN +RA VH++ +KMG
Sbjct: 3   KKNQRKAAQQQNPRVAEATLIRISKILERFRAAPDQVYTFEANLSNYDRAVVHEVCKKMG 62

Query: 230 LRSKSYGLGNERRVSVQKIKKKVDIDNEFDSLPHFMFSEESKRVLGDLFAHYPPGDG 400
           ++SKS G G +RRVSV K  KK+D     ++L H  FS ESK VLG+LF++YPP +G
Sbjct: 63  MKSKSSGRGGQRRVSVYKNTKKLDDVKGKENLTHLTFSGESKMVLGELFSNYPPEEG 119


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