BLASTX nr result
ID: Glycyrrhiza23_contig00021006
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00021006
(1384 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003551782.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 496 e-138
ref|XP_003530460.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 444 e-122
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 413 e-113
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras... 378 e-102
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras... 375 e-101
>ref|XP_003551782.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Glycine max]
Length = 992
Score = 496 bits (1277), Expect = e-138
Identities = 268/432 (62%), Positives = 313/432 (72%), Gaps = 2/432 (0%)
Frame = +3
Query: 93 MFTAAATTTSSLNKRNKNPLPLQPTSSGISTNMWRNVAKQVCSKGFXXXXXXXXXXXXTF 272
MF + + LN NPL Q + S IS+NMWR+ AK VC +G
Sbjct: 1 MFPSPNSLAKGLNSL-PNPLISQSSHSAISSNMWRHAAKHVC-RGIIRQNFHPPRLL-AL 57
Query: 273 SQGSVFPTKLEILCHPGKQNQTGHVNRSRFHSVEKSCFGCCSNGS-RFQLGVKGYAGVAE 449
S GSVF K E+L SV K C + G +FQ G KGY+GVAE
Sbjct: 58 SHGSVFSPKREVL----------------LSSVAK--LNCIARGDFQFQFGAKGYSGVAE 99
Query: 450 AVSSTDADEDPS-PVDEIQEILKEMRKEEQRQVVDYRWQGGVNLRKGMTEAKYKELRKRQ 626
AVSSTD +ED + PVD IQE+L+ M+KE+Q++VV YRW+ N KG+ +++Y+ELR+RQ
Sbjct: 100 AVSSTDVEEDEAAPVDGIQELLQGMKKEKQKKVVGYRWK---NQGKGVGQSRYQELRRRQ 156
Query: 627 VKIETEVWEEAAKEYRELLVDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQEMYLIGK 806
VKIETE+WEEAAKEYRELL+DMCE KLAPNLPYMKSLFLGWFEPLRDAI KEQEMY GK
Sbjct: 157 VKIETEMWEEAAKEYRELLMDMCEHKLAPNLPYMKSLFLGWFEPLRDAIVKEQEMYSEGK 216
Query: 807 KKTVYASYFVQLPPDKMAVITMHRLMGLLMTGTEQGSVGTARVVQAVCSIGDAVEHEVRI 986
+ YA YFVQLP DKMAVI MH+LMGLLMTG E+ ++GTARVVQA C IGDA+E+EVRI
Sbjct: 217 NRMAYAPYFVQLPADKMAVIAMHKLMGLLMTGNERVTIGTARVVQAACGIGDAIENEVRI 276
Query: 987 HKFLEXXXXXXXXXXXXXEADECATDIKEGEKLRKKVIDLMKKQKVVAVRGIVKGLDDTK 1166
HKFLE +A E DIKE +KLRKKVIDLMKKQK+VAVRG+VKG DDTK
Sbjct: 277 HKFLEKTKKKKGDRSNKNKAGESVADIKEEQKLRKKVIDLMKKQKLVAVRGLVKGKDDTK 336
Query: 1167 PWGPVMKTKVGSRLVEFLVQTAYIQPPSDQLVDSPPDIRPAFVHSFRTVTKEATKTGRRY 1346
PWG V+KTKVGSRL+E L+QTAYIQPPSDQL D+ PDIRPAFVHSF+TVTKE+ K RRY
Sbjct: 337 PWGAVIKTKVGSRLIELLLQTAYIQPPSDQLPDAAPDIRPAFVHSFKTVTKESIKASRRY 396
Query: 1347 GIIECDPLILKG 1382
GII+CDPLILKG
Sbjct: 397 GIIQCDPLILKG 408
>ref|XP_003530460.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Glycine max]
Length = 1015
Score = 444 bits (1141), Expect = e-122
Identities = 247/454 (54%), Positives = 288/454 (63%), Gaps = 56/454 (12%)
Frame = +3
Query: 189 MWRNVAKQVCSKGFXXXXXXXXXXXXTFSQGSVFPTKLEILCHPGKQNQTGHVNRSRFHS 368
MWR+ AK C + S GS+F K E +S
Sbjct: 1 MWRHAAKHACRGSIRQSFHPSRLL--SLSHGSIFSPKREAF----------------LYS 42
Query: 369 VEKSCFGCCSNGS-RFQLGVKGYAGVAEAVSSTDADEDP--------------------- 482
V + C G +FQ G KGY+GVAEA SSTD +ED
Sbjct: 43 VAR--LNCIGRGDFQFQFGAKGYSGVAEAASSTDVEEDGVFVDEIQQLLLQEMNDEVESQ 100
Query: 483 ------SPVDEIQEIL---------------------------KEMRKEEQRQVVDY-RW 560
+P+DEIQ++L + M+KE+Q++VV Y RW
Sbjct: 101 LVEEEGAPIDEIQQLLLHEMHKEERNELVEEQAAPGDGIRGLFQGMKKEKQKKVVGYNRW 160
Query: 561 QGGVNLRKGMTEAKYKELRKRQVKIETEVWEEAAKEYRELLVDMCEQKLAPNLPYMKSLF 740
Q N KG+ + +Y+ELR+RQVKIETE WEEAAKEYRELL+DMCE KLAPNLPYMKSLF
Sbjct: 161 Q---NEGKGVGQCRYQELRRRQVKIETETWEEAAKEYRELLMDMCEHKLAPNLPYMKSLF 217
Query: 741 LGWFEPLRDAIAKEQEMYLIGKKKTVYASYFVQLPPDKMAVITMHRLMGLLMTGTEQGSV 920
LGWFEPLRDAI KEQEMY GK +T Y YFVQLP DKMAVI MH+LMGLLMTGTE +V
Sbjct: 218 LGWFEPLRDAIVKEQEMYGEGKNRTAYVPYFVQLPADKMAVIAMHKLMGLLMTGTEHATV 277
Query: 921 GTARVVQAVCSIGDAVEHEVRIHKFLEXXXXXXXXXXXXXEADECATDIKEGEKLRKKVI 1100
GTARVVQA C IGDA+E+EVRIHKFLE +A E DIKE +KLRKKVI
Sbjct: 278 GTARVVQAACGIGDAIENEVRIHKFLEKTKKKKGDRSKKNKASESVADIKEEQKLRKKVI 337
Query: 1101 DLMKKQKVVAVRGIVKGLDDTKPWGPVMKTKVGSRLVEFLVQTAYIQPPSDQLVDSPPDI 1280
DLMKKQK+VAVRG+VKG DDTKPWG +KTKVGSRL+E L+QTAYIQPP DQL+D+ PDI
Sbjct: 338 DLMKKQKLVAVRGLVKGKDDTKPWGAAIKTKVGSRLIELLMQTAYIQPPPDQLLDAAPDI 397
Query: 1281 RPAFVHSFRTVTKEATKTGRRYGIIECDPLILKG 1382
RPAFVHSFRTV K + K +RYGI++CDPLILKG
Sbjct: 398 RPAFVHSFRTVAKVSAKASKRYGIVQCDPLILKG 431
>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
[Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
protein product [Vitis vinifera]
Length = 1035
Score = 413 bits (1061), Expect = e-113
Identities = 232/432 (53%), Positives = 279/432 (64%), Gaps = 18/432 (4%)
Frame = +3
Query: 141 KNPLPLQPTSSGISTNMWRNVAKQVCSKG------FXXXXXXXXXXXXTFSQGSVFPTKL 302
+ P +P T MWRN+AK+ + FSQ +FP +
Sbjct: 24 EKPTNFRPNPLKKPTVMWRNIAKRAIPRAPRKCVYLDSQPLSRRYSFLGFSQDLIFPEIM 83
Query: 303 EI-LCHPGKQNQTGHVNR---------SRFHSVEKSCFGCCSNGSRFQ-LGVKGYAGVAE 449
+ P + +G SR +V + FGC N F K YA VAE
Sbjct: 84 KFGTFEPSSCSSSGFSEMGFRRIGEISSREDAVGRPSFGCLRNQMGFSGFCPKSYASVAE 143
Query: 450 AVSSTDADEDPSPVDEIQEILKEMRKEEQRQVVDYRWQGGVNLRKGMTEAKYKELRKRQV 629
AVSSTD +ED S DEIQE+L EM+KEE+RQV +++ + + + +GM + +Y LR+RQV
Sbjct: 144 AVSSTDVEEDVSASDEIQELLGEMKKEEKRQV-NFKRREKLKMERGMEQGRYLRLRRRQV 202
Query: 630 KIETEVWEEAAKEYRELLVDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAKEQEMYLIGKK 809
KIETE WE AAKEY+ELL+DMCEQKLAPNLPYMKSLFLGWFEPLRDAI KEQE+ +GK
Sbjct: 203 KIETEAWELAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKN 262
Query: 810 KTVYASYFVQLPPDKMAVITMHRLMGLLMTGTEQGSVGTARVVQAVCSIGDAVEHEVRIH 989
K YA YF QLP D M+VITMH+L+GLLMTG E GS RVVQA C IGDA+E EVRIH
Sbjct: 263 KAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHGS---TRVVQAACVIGDAIEQEVRIH 319
Query: 990 KFLEXXXXXXXXXXXXXEADECATDIKEGEKLRKKVIDLMKKQKVVAVRGIVKGLDDTKP 1169
FLE E I E EKLRKKV +LMKKQK+ A R IVKG D++KP
Sbjct: 320 NFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKP 379
Query: 1170 WGPVMKTKVGSRLVEFLVQTAYIQPPSD-QLVDSPPDIRPAFVHSFRTVTKEATKTGRRY 1346
WGP K KVGSRL+E L+QTAYIQPP D QL D+PPDIRPAFVH+F+TV +EA K GRR+
Sbjct: 380 WGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRF 439
Query: 1347 GIIECDPLILKG 1382
G+IECDPL+ KG
Sbjct: 440 GVIECDPLVKKG 451
>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 378 bits (970), Expect = e-102
Identities = 230/443 (51%), Positives = 270/443 (60%), Gaps = 21/443 (4%)
Frame = +3
Query: 117 TSSLNKRNKNPLPLQPTSSGISTNMWRNVAKQVCSKG---FXXXXXXXXXXXXTFSQGSV 287
T LN+ P L S MWRN+ KQ+ S+ F Q SV
Sbjct: 11 TIKLNQFTDKPTGLDINRYHNSPIMWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSV 70
Query: 288 FPTK------LEILCHP---GKQNQTGHVNRSRFHS-------VEKSCFGCCSNGSRFQL 419
F + I C G QN ++ F S V + F CC
Sbjct: 71 FKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSRPLLKNQVNSNDF-CCR------- 122
Query: 420 GVKGYAGVAEAV--SSTDADEDPSPVDEIQEILKEMRKEEQRQVVDYRWQGGVNLRKGMT 593
K YA VAEAV SSTDA+ED S VDE+QE+L E++KEE++Q +R + L GM
Sbjct: 123 --KSYASVAEAVAVSSTDAEEDVSVVDEVQELLTELKKEEKKQFA-FRRRKQRMLTSGMG 179
Query: 594 EAKYKELRKRQVKIETEVWEEAAKEYRELLVDMCEQKLAPNLPYMKSLFLGWFEPLRDAI 773
KY+ L++RQVK+ETE WE+AAKEY+ELL DMCEQKLAPNLPY+KSLFLGWFEPLRD I
Sbjct: 180 HRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKI 239
Query: 774 AKEQEMYLIGKKKTVYASYFVQLPPDKMAVITMHRLMGLLMTGTEQGSVGTARVVQAVCS 953
A+EQE+ GK K YA Y QLP D MAVITMH+LMGLLMTG G GTARVVQA
Sbjct: 240 AEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTG---GDHGTARVVQAALV 296
Query: 954 IGDAVEHEVRIHKFLEXXXXXXXXXXXXXEADECATDIKEGEKLRKKVIDLMKKQKVVAV 1133
IGDA+E EVRIH FLE E E T +E EKLRKKV +LMKKQK+ AV
Sbjct: 297 IGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVT--QEQEKLRKKVTNLMKKQKLRAV 354
Query: 1134 RGIVKGLDDTKPWGPVMKTKVGSRLVEFLVQTAYIQPPSDQLVDSPPDIRPAFVHSFRTV 1313
IV+ DD+KPWG K KVGSRL+E L+QTAYIQPP++QL PPDIRPAF+HS RTV
Sbjct: 355 GQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTV 414
Query: 1314 TKEATKTGRRYGIIECDPLILKG 1382
KE RRYGII+CD L+ KG
Sbjct: 415 AKETKSASRRYGIIQCDELVFKG 437
>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 375 bits (962), Expect = e-101
Identities = 226/441 (51%), Positives = 269/441 (60%), Gaps = 19/441 (4%)
Frame = +3
Query: 117 TSSLNKRNKNPLPLQPTSSGISTNMWRNVAKQVCSKG---FXXXXXXXXXXXXTFSQGSV 287
T LN+ P L S MWRN+ KQ+ S+ F Q S+
Sbjct: 11 TIKLNQFTDKPTGLDINPYHNSPIMWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSI 70
Query: 288 FPTK------LEILCHP---GKQNQTGHVNRSRFHSV-----EKSCFGCCSNGSRFQLGV 425
F + I C G QN ++ F S + + CC
Sbjct: 71 FKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSRPLIKNQVNNNFCCR--------- 121
Query: 426 KGYAGVAEAV--SSTDADEDPSPVDEIQEILKEMRKEEQRQVVDYRWQGGVNLRKGMTEA 599
K YA VAEAV SSTDA+ED S VDE+ E+L E++KEE++Q +R + L GM
Sbjct: 122 KSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFA-FRRRKQRMLTSGMGHR 180
Query: 600 KYKELRKRQVKIETEVWEEAAKEYRELLVDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAK 779
KY+ L++RQVK+ETE WE+AAKEY+ELL DMCEQKLAPNLPY+KSLFLGWFEPLRD IA+
Sbjct: 181 KYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAE 240
Query: 780 EQEMYLIGKKKTVYASYFVQLPPDKMAVITMHRLMGLLMTGTEQGSVGTARVVQAVCSIG 959
EQE+ GK K YA YF QLP D MAVITMH+LMGLLMTG G GTARVVQA IG
Sbjct: 241 EQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTG---GDHGTARVVQAALVIG 297
Query: 960 DAVEHEVRIHKFLEXXXXXXXXXXXXXEADECATDIKEGEKLRKKVIDLMKKQKVVAVRG 1139
DA+E EVRIH FLE E E T +E EKLRKKV +LMKKQK+ AV
Sbjct: 298 DAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVT--QEQEKLRKKVTNLMKKQKLRAVGQ 355
Query: 1140 IVKGLDDTKPWGPVMKTKVGSRLVEFLVQTAYIQPPSDQLVDSPPDIRPAFVHSFRTVTK 1319
IV+ DD+KPWG + KVGSRL++ L+QTAYIQPP++QL PPDIRPAFVHS RTV K
Sbjct: 356 IVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAK 415
Query: 1320 EATKTGRRYGIIECDPLILKG 1382
E RRYGII+CD L+ KG
Sbjct: 416 ETKSASRRYGIIQCDELVFKG 436