BLASTX nr result

ID: Glycyrrhiza23_contig00019812 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00019812
         (940 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003629342.1| Zinc finger CCCH domain-containing protein [...   295   1e-77
ref|XP_003519872.1| PREDICTED: zinc finger CCCH domain-containin...   237   3e-60
ref|XP_002530750.1| conserved hypothetical protein [Ricinus comm...   118   2e-24
ref|XP_002327763.1| predicted protein [Populus trichocarpa] gi|2...   116   9e-24
emb|CBI17393.3| unnamed protein product [Vitis vinifera]              107   4e-21

>ref|XP_003629342.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
            gi|355523364|gb|AET03818.1| Zinc finger CCCH
            domain-containing protein [Medicago truncatula]
          Length = 594

 Score =  295 bits (754), Expect = 1e-77
 Identities = 154/240 (64%), Positives = 179/240 (74%), Gaps = 1/240 (0%)
 Frame = +2

Query: 11   IPAVSSLNPTPDKPAILL-PAIPSVSMVTSTYDKPATASVPLSRPVSGKPVSPSVFLPTP 187
            IP+VSS NPT  KP  L  PAIPS S+V+S +DKPATAS PLSRPVS KP+SPSVF+ TP
Sbjct: 315  IPSVSSFNPTSGKPTTLFAPAIPSYSIVSSAHDKPATASAPLSRPVSSKPISPSVFMSTP 374

Query: 188  TPAPYMLRSVNKNTHHMSNGMPTAINTQPQPDPVLASGVKRXXXXXXXXXXELGMVPLHP 367
            T  P+M R VN N  HMS+ MPTA++TQPQ D  LASGVKR          E   VPL P
Sbjct: 375  TLEPHMPRPVNNN-FHMSSPMPTALHTQPQLDSFLASGVKRSASFTFSSS-EQSTVPL-P 431

Query: 368  ATGNLHAVVNQAQTTASTMPYRLSTGSASAVKDADYYKNLIRQHGADKQHKQDSQIGIHH 547
             +GNLH V+N  Q TAST PY+ S+GSASAVKD +YYKNLIRQHGAD Q K DSQIG HH
Sbjct: 432  PSGNLHTVLNNTQPTASTKPYQTSSGSASAVKDVNYYKNLIRQHGADGQDKLDSQIGSHH 491

Query: 548  SNFQDLKPVHNIKQGDVKHKIQKPCIYFKSSRGCRNGSNCPYLHEVSVQWGSGNVLGAQN 727
            SNFQD+K  HN  QG+VK+K +K CIYF SSRGCRNGS+CP+ H+VS + G+GN LG Q+
Sbjct: 492  SNFQDMKLAHNNNQGEVKYKSKKQCIYFNSSRGCRNGSDCPFQHDVSAESGAGNFLGGQS 551


>ref|XP_003519872.1| PREDICTED: zinc finger CCCH domain-containing protein 6-like
           [Glycine max]
          Length = 520

 Score =  237 bits (604), Expect = 3e-60
 Identities = 136/248 (54%), Positives = 157/248 (63%), Gaps = 1/248 (0%)
 Frame = +2

Query: 14  PAVSSLNPTPDKPAILLPAIPSVSMVTSTYDKPATASVPLSRPVSGKPVSPSVFLPTP-T 190
           P+VS LNPTP    + +PAIPSVS+++S++DKP TASVPLSRPV G PV+PSV + T  T
Sbjct: 327 PSVSLLNPTP---ILSVPAIPSVSLLSSSHDKPVTASVPLSRPVPGMPVTPSVSMLTHHT 383

Query: 191 PAPYMLRSVNKNTHHMSNGMPTAINTQPQPDPVLASGVKRXXXXXXXXXXELGMVPLHPA 370
           PAP M R V+KN HH+S+GMP A+N                                   
Sbjct: 384 PAPDMHRPVSKNFHHVSSGMPPALN----------------------------------- 408

Query: 371 TGNLHAVVNQAQTTASTMPYRLSTGSASAVKDADYYKNLIRQHGADKQHKQDSQIGIHHS 550
                   NQ+Q           T  AS  K A+YYKNLIRQHGADKQ  QDS IGI HS
Sbjct: 409 --------NQSQQ---------ETAMASGPKRANYYKNLIRQHGADKQDIQDSHIGIRHS 451

Query: 551 NFQDLKPVHNIKQGDVKHKIQKPCIYFKSSRGCRNGSNCPYLHEVSVQWGSGNVLGAQNA 730
           NFQD+KPVHNIKQ +VK KI KPCIYFKS RGCRNGSNC Y H+VS Q G+GNVL AQ+A
Sbjct: 452 NFQDMKPVHNIKQREVKPKILKPCIYFKSPRGCRNGSNCSYQHDVSAQEGAGNVLRAQSA 511

Query: 731 KRLKLGTE 754
           KRLKLG E
Sbjct: 512 KRLKLGGE 519


>ref|XP_002530750.1| conserved hypothetical protein [Ricinus communis]
            gi|223529714|gb|EEF31656.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 497

 Score =  118 bits (296), Expect = 2e-24
 Identities = 82/265 (30%), Positives = 122/265 (46%), Gaps = 32/265 (12%)
 Frame = +2

Query: 59   LLPAIPSVSMVTSTYDKPATASVPLSRPVSGKPVSPSVF--------LPTPTPAPYMLRS 214
            +LP+ P  ++  +T        +P+      KPV+ SVF        L  P PA   L+ 
Sbjct: 238  ILPSCPKPNVTFATSTDGNFHFLPIGSQPPSKPVATSVFPSCHKSTMLSVPMPANGSLQP 297

Query: 215  VNKNTHHMSNGMPTAINTQPQPDPVLASGVKRXXXXXXXXXXELGMVPLHPATGNLHAVV 394
                        PT     PQPD     G K            + +    PA  N++   
Sbjct: 298  PTGEVQ------PTVTRLPPQPDTNPIPGSKPTASISLARQQSVNISIPKPAVSNMYTKP 351

Query: 395  NQAQTTASTMPYRLSTGS------------------------ASAVKDADYYKNLIRQHG 502
            +Q Q+T S++P +L+  S                         + VKD +Y K+LIR+HG
Sbjct: 352  DQVQSTVSSIPAQLAPKSFAELKPNPNPIYGGTLQANAVSTKTNPVKDINYIKDLIREHG 411

Query: 503  ADKQHKQDSQIGIHHSNFQDLKPVHNIKQGDVKHKIQKPCIYFKSSRGCRNGSNCPYLHE 682
            +DK ++  S  G H +N   +K      Q +++ K QKPC+Y++S +GCRNGSNCPY H+
Sbjct: 412  SDKHNEHMSYNGPHATNHILIK---EFGQNNLRPKFQKPCMYYRSPKGCRNGSNCPYQHD 468

Query: 683  VSVQWGSGNVLGAQNAKRLKLGTEI 757
            +S Q+ +G  L A  AKR+KL  EI
Sbjct: 469  LSFQFQTGGNLEAPYAKRMKLDGEI 493


>ref|XP_002327763.1| predicted protein [Populus trichocarpa] gi|222836848|gb|EEE75241.1|
           predicted protein [Populus trichocarpa]
          Length = 536

 Score =  116 bits (290), Expect = 9e-24
 Identities = 80/241 (33%), Positives = 117/241 (48%), Gaps = 4/241 (1%)
 Frame = +2

Query: 47  KPAILLPAIPSVSMVTSTYDKPATASVPLSRPVSGKPVSPS----VFLPTPTPAPYMLRS 214
           KPA+ LP++PS   +   Y +P+     +SR    +  +P+    VF   P P P     
Sbjct: 324 KPAMPLPSMPSNGCL---YLQPSQMHPTVSRASMHQDTAPASGFGVFSSIPVPIP----- 375

Query: 215 VNKNTHHMSNGMPTAINTQPQPDPVLASGVKRXXXXXXXXXXELGMVPLHPATGNLHAVV 394
                  + N MPT ++T P+         K           +  +V + P   N     
Sbjct: 376 -------VPNSMPTTVSTVPRESMATQISFKDTGPNQMSNLVQSTLV-MKPVQPN----- 422

Query: 395 NQAQTTASTMPYRLSTGSASAVKDADYYKNLIRQHGADKQHKQDSQIGIHHSNFQDLKPV 574
           +  Q    T P          VKD +Y KNLIR+HG  K+  QD   G H++  Q+ + +
Sbjct: 423 SVPQAGMKTNP----------VKDVEYIKNLIREHGTAKKEIQDRN-GRHYNQTQNQELI 471

Query: 575 HNIKQGDVKHKIQKPCIYFKSSRGCRNGSNCPYLHEVSVQWGSGNVLGAQNAKRLKLGTE 754
            NIK+ + KHK QKPC+YFK+ +GCRNG NCP+ H+ S Q+ +G+ L A  AKR+K   E
Sbjct: 472 QNIKKRESKHKSQKPCMYFKTPKGCRNGFNCPFQHDPSFQFQTGSALDAPVAKRMKFSGE 531

Query: 755 I 757
           I
Sbjct: 532 I 532


>emb|CBI17393.3| unnamed protein product [Vitis vinifera]
          Length = 449

 Score =  107 bits (267), Expect = 4e-21
 Identities = 58/141 (41%), Positives = 82/141 (58%), Gaps = 10/141 (7%)
 Frame = +2

Query: 365 PATGNLHAVVNQAQTTAST---MPYRLSTGSASA----VKDADYYKNLIRQHGADKQHKQ 523
           P  GNLH ++   Q T +T   +P  L T S  A    VKD +YYK+L++QHG +KQ  Q
Sbjct: 305 PTNGNLHNILKGVQPTLNTTPTLPDILPTSSFKAIKSHVKDVNYYKSLVKQHGGEKQGTQ 364

Query: 524 DS---QIGIHHSNFQDLKPVHNIKQGDVKHKIQKPCIYFKSSRGCRNGSNCPYLHEVSVQ 694
           D    Q   H +  Q ++ + N K  ++K K QK CI++ S  GCRNG+NCPY H+   Q
Sbjct: 365 DQIIPQYANHENYLQGMELIQNFKPTELKPKSQKSCIFYNSPTGCRNGTNCPYQHDTFSQ 424

Query: 695 WGSGNVLGAQNAKRLKLGTEI 757
              G++L  + AKR+KL  +I
Sbjct: 425 LRCGSMLEDKRAKRMKLDGKI 445


Top