BLASTX nr result

ID: Glycyrrhiza23_contig00019708 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00019708
         (279 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003539241.1| PREDICTED: LOW QUALITY PROTEIN: integrator c...   139   2e-31
ref|XP_003598665.1| Integrator complex subunit [Medicago truncat...   134   8e-30
ref|XP_002520390.1| conserved hypothetical protein [Ricinus comm...    93   2e-17
ref|XP_002328846.1| predicted protein [Populus trichocarpa] gi|2...    89   5e-16
ref|XP_002265081.2| PREDICTED: integrator complex subunit 9 homo...    80   1e-13

>ref|XP_003539241.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 9-like
           [Glycine max]
          Length = 794

 Score =  139 bits (351), Expect = 2e-31
 Identities = 72/93 (77%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
 Frame = +1

Query: 4   KVQPLLKTLHPKTVLCPEDLRLQIRFSCEKSS-SVLYYTEAETLKVSCQKDSSQSKIAAD 180
           +VQPLLKTL PKTVLCPE+LRL I FS EK S SVLYYTEAETLKV  +KDSS+ KIA D
Sbjct: 606 EVQPLLKTLQPKTVLCPEELRLHINFSSEKKSFSVLYYTEAETLKVPYRKDSSELKIATD 665

Query: 181 LASQFYWKTFKNEGINIASLKGKLLMENGSHYL 279
           LAS FYWKTFK E INIA LKG+LLMENG H+L
Sbjct: 666 LASHFYWKTFKKEEINIAKLKGELLMENGRHHL 698


>ref|XP_003598665.1| Integrator complex subunit [Medicago truncatula]
           gi|355487713|gb|AES68916.1| Integrator complex subunit
           [Medicago truncatula]
          Length = 536

 Score =  134 bits (337), Expect = 8e-30
 Identities = 73/125 (58%), Positives = 81/125 (64%), Gaps = 32/125 (25%)
 Frame = +1

Query: 1   QKVQPLLKTLHPKTVLCPEDLRLQIRFSCEKSSSVLYYTEAETLKVSCQKDSSQSK---- 168
           QK+QPLLKTL PKT+L PEDLRL++ FSCEKS SV YYTEAETLKV CQK+SS+ K    
Sbjct: 315 QKLQPLLKTLQPKTILFPEDLRLKMCFSCEKSFSVSYYTEAETLKVPCQKESSELKMSFS 374

Query: 169 ----------------------------IAADLASQFYWKTFKNEGINIASLKGKLLMEN 264
                                       I ADLASQFYWKTFK EGIN+  LKGKLLMEN
Sbjct: 375 CEKSFSVSYCTEPETLKVFCQKESSELKIEADLASQFYWKTFKKEGINVTKLKGKLLMEN 434

Query: 265 GSHYL 279
           G H+L
Sbjct: 435 GRHHL 439


>ref|XP_002520390.1| conserved hypothetical protein [Ricinus communis]
           gi|223540437|gb|EEF42006.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 705

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 49/95 (51%), Positives = 63/95 (66%), Gaps = 2/95 (2%)
 Frame = +1

Query: 1   QKVQPLLKTLHPKTVLCPEDLRLQIRFSCEKSS--SVLYYTEAETLKVSCQKDSSQSKIA 174
           QK+QPLLK LHPK VL PEDL+  I  S   S   SVLYYTE ET ++   KDSS  +IA
Sbjct: 516 QKIQPLLKILHPKVVLFPEDLKQHINASSSSSHPFSVLYYTENETQEIQSLKDSSDVEIA 575

Query: 175 ADLASQFYWKTFKNEGINIASLKGKLLMENGSHYL 279
            DLA++F WK  K +  +I  L+G+LL+++  H L
Sbjct: 576 TDLATRFCWKKLKRKDTDITRLEGELLIDDSKHRL 610


>ref|XP_002328846.1| predicted protein [Populus trichocarpa] gi|222839144|gb|EEE77495.1|
           predicted protein [Populus trichocarpa]
          Length = 213

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 45/91 (49%), Positives = 61/91 (67%)
 Frame = +1

Query: 1   QKVQPLLKTLHPKTVLCPEDLRLQIRFSCEKSSSVLYYTEAETLKVSCQKDSSQSKIAAD 180
           QK QPLL+ L PK VL PEDLR QI+FS   S SV YY E ETL V   K S   +IA++
Sbjct: 25  QKTQPLLEMLRPKEVLFPEDLREQIKFSGSHSFSVFYYAENETLGVPRSKGSVDLEIASN 84

Query: 181 LASQFYWKTFKNEGINIASLKGKLLMENGSH 273
           LA+QF W+   ++ ++I  L+G+L +++G H
Sbjct: 85  LATQFSWRKLDHDDVDITRLEGQLFIDHGKH 115


>ref|XP_002265081.2| PREDICTED: integrator complex subunit 9 homolog [Vitis vinifera]
           gi|296081277|emb|CBI17721.3| unnamed protein product
           [Vitis vinifera]
          Length = 774

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 45/93 (48%), Positives = 55/93 (59%)
 Frame = +1

Query: 1   QKVQPLLKTLHPKTVLCPEDLRLQIRFSCEKSSSVLYYTEAETLKVSCQKDSSQSKIAAD 180
           QKVQPLLK L PK VL PEDLR  + +S   S +  YY E ETL V   K+SS+ +IAAD
Sbjct: 586 QKVQPLLKILQPKFVLFPEDLRQLVSYSDTNSHAFFYYCENETLPVPSLKNSSELEIAAD 645

Query: 181 LASQFYWKTFKNEGINIASLKGKLLMENGSHYL 279
           L S  + +    E I I  LKG   + +G H L
Sbjct: 646 LVSLIHCRRLTAESIGIGRLKGDFSVTHGKHQL 678


Top