BLASTX nr result

ID: Glycyrrhiza23_contig00019398 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00019398
         (206 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003597428.1| RNA-binding protein [Medicago truncatula] gi...   110   2e-22
ref|XP_002513488.1| nuclear acid binding protein, putative [Rici...   102   4e-20
ref|XP_002313332.1| predicted protein [Populus trichocarpa] gi|2...   101   6e-20
ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding prote...    97   1e-18
emb|CBI16387.3| unnamed protein product [Vitis vinifera]               97   1e-18

>ref|XP_003597428.1| RNA-binding protein [Medicago truncatula]
           gi|355486476|gb|AES67679.1| RNA-binding protein
           [Medicago truncatula]
          Length = 428

 Score =  110 bits (274), Expect = 2e-22
 Identities = 48/54 (88%), Positives = 53/54 (98%)
 Frame = +1

Query: 43  MATGYHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKMTGQ 204
           MAT YHQP+S+EEVRTLWIGDLQYWVDENYLTHCF+HTGEV+SIKIIRNK+TGQ
Sbjct: 1   MATTYHQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQ 54


>ref|XP_002513488.1| nuclear acid binding protein, putative [Ricinus communis]
           gi|223547396|gb|EEF48891.1| nuclear acid binding
           protein, putative [Ricinus communis]
          Length = 412

 Score =  102 bits (253), Expect = 4e-20
 Identities = 44/51 (86%), Positives = 50/51 (98%)
 Frame = +1

Query: 52  GYHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKMTGQ 204
           GYHQP+++EEVRTLWIGDLQYWVDENYL+ CFAHTGEV+SIKIIRNK+TGQ
Sbjct: 11  GYHQPATLEEVRTLWIGDLQYWVDENYLSSCFAHTGEVLSIKIIRNKITGQ 61


>ref|XP_002313332.1| predicted protein [Populus trichocarpa] gi|222849740|gb|EEE87287.1|
           predicted protein [Populus trichocarpa]
          Length = 415

 Score =  101 bits (252), Expect = 6e-20
 Identities = 44/51 (86%), Positives = 49/51 (96%)
 Frame = +1

Query: 52  GYHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKMTGQ 204
           GYHQP+++EEVRTLWIGDLQYW DE+YLT CFAHTGEVVSIKIIRNK+TGQ
Sbjct: 9   GYHQPATLEEVRTLWIGDLQYWADESYLTSCFAHTGEVVSIKIIRNKLTGQ 59


>ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
           isoform 2 [Vitis vinifera]
          Length = 438

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 44/53 (83%), Positives = 48/53 (90%)
 Frame = +1

Query: 46  ATGYHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKMTGQ 204
           A  Y QP+S+EEVRTLWIGDLQYWVDENYL  CFAHTGEV+SIKIIRNK+TGQ
Sbjct: 28  AQPYTQPTSVEEVRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQ 80


>emb|CBI16387.3| unnamed protein product [Vitis vinifera]
          Length = 445

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 44/53 (83%), Positives = 48/53 (90%)
 Frame = +1

Query: 46  ATGYHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKMTGQ 204
           A  Y QP+S+EEVRTLWIGDLQYWVDENYL  CFAHTGEV+SIKIIRNK+TGQ
Sbjct: 28  AQPYTQPTSVEEVRTLWIGDLQYWVDENYLHSCFAHTGEVISIKIIRNKITGQ 80


Top