BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00019233
         (409 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E sub...    83   2e-14
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E sub...    83   2e-14
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...    79   5e-13
ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar...    67   2e-09
emb|CBI40152.3| unnamed protein product [Vitis vinifera]               65   7e-09

>ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
           max]
          Length = 2098

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 42/62 (67%), Positives = 43/62 (69%)
 Frame = -3

Query: 188 MEDNPPSSVLDGKVVGIRFSMATRQEXXXXXXXXXXXXXXXXXSNPFLGLPLEFGRCESC 9
           MEDNPPSSVLDG VVGI+F MATRQE                 SNPFLGLPLEFGRCESC
Sbjct: 1   MEDNPPSSVLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESC 60

Query: 8   GT 3
           GT
Sbjct: 61  GT 62


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
           max]
          Length = 2020

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 42/62 (67%), Positives = 43/62 (69%)
 Frame = -3

Query: 188 MEDNPPSSVLDGKVVGIRFSMATRQEXXXXXXXXXXXXXXXXXSNPFLGLPLEFGRCESC 9
           MEDNPPSSVLDG VVGI+F MATRQE                 SNPFLGLPLEFGRCESC
Sbjct: 1   MEDNPPSSVLDGTVVGIKFGMATRQEICTASISESSISHASQLSNPFLGLPLEFGRCESC 60

Query: 8   GT 3
           GT
Sbjct: 61  GT 62


>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
           gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
           subunit [Medicago truncatula]
          Length = 2032

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 42/69 (60%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
 Frame = -3

Query: 206 RFTQE-AMEDNPPSSVLDGKVVGIRFSMATRQEXXXXXXXXXXXXXXXXXSNPFLGLPLE 30
           RFT+   MEDN  +S+LDGKVVGIRFSMATR E                 +NPFLGLPLE
Sbjct: 46  RFTKVFIMEDNATTSLLDGKVVGIRFSMATRHEISTASISDSQISHASQLANPFLGLPLE 105

Query: 29  FGRCESCGT 3
           FGRCESCGT
Sbjct: 106 FGRCESCGT 114


>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 924

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 30/62 (48%), Positives = 40/62 (64%)
 Frame = -3

Query: 188 MEDNPPSSVLDGKVVGIRFSMATRQEXXXXXXXXXXXXXXXXXSNPFLGLPLEFGRCESC 9
           M++N  SS+ DG++ GIRF +AT++E                 +NPFLGLPLEFG+CESC
Sbjct: 1   MDENSQSSIFDGEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCESC 60

Query: 8   GT 3
           GT
Sbjct: 61  GT 62


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 30/56 (53%), Positives = 37/56 (66%)
 Frame = -3

Query: 170 SSVLDGKVVGIRFSMATRQEXXXXXXXXXXXXXXXXXSNPFLGLPLEFGRCESCGT 3
           S++LDG++ GIRF +ATRQE                 +NPFLGLPLEFG+CESCGT
Sbjct: 6   STILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESCGT 61