BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00018823
         (819 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003537767.1| PREDICTED: DNA-directed RNA polymerase III s...   293   4e-77
ref|XP_003612529.1| DNA-directed RNA polymerase III subunit RPC5...   278   1e-72
ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5...   254   2e-65
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   244   1e-62
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s...   244   1e-62

>ref|XP_003537767.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
           [Glycine max]
          Length = 680

 Score =  293 bits (749), Expect = 4e-77
 Identities = 161/255 (63%), Positives = 180/255 (70%), Gaps = 6/255 (2%)
 Frame = +3

Query: 63  MDLDDLE-APSQVPSRVSKFAXXXXXXXXXXXXXXXXXXXXXXXXXAAVPSSKPEPQEF- 236
           MD DDLE AP +  SRVSKFA                            P SKPEPQEF 
Sbjct: 1   MDFDDLEEAPIKATSRVSKFAPKSSKLKPKPKSEPAPPKPEPQP-----PISKPEPQEFV 55

Query: 237 DLNAKKDEDGVEDTVAPTHTKSEPDGTAKMDV---EPKSEAEDDPMDED-SAEDTVVREI 404
               KK+ED   +TV PTHTK E D T KM+    EP+S   DDP+DED   EDTVVREI
Sbjct: 56  AATVKKNEDDGVETVPPTHTKPELDATVKMEEAEDEPES-VRDDPIDEDIPEEDTVVREI 114

Query: 405 DVFFTPSIDADTQLYVLQYPLRPCWRPYELDEQCEEVRLKPGSSEVEVDLSIDLESSNID 584
           DVFF+PS+DA TQLYV QYPLRP WRPY+LDEQCEEVRLK  +SEVE+DLSIDL+S +ID
Sbjct: 115 DVFFSPSVDAQTQLYVFQYPLRPSWRPYDLDEQCEEVRLKTKTSEVEIDLSIDLDSDHID 174

Query: 585 KEFSSRLNYTKQTLSTLWKPPRANGCAVGLLMGDKLHLHPIHAVVQLRPSLQHLNSGGSK 764
           KEF+++ N TKQTLST WKP  ANGCAVGLLMGDKLHLHP+HAVVQLRP+LQHLNSGGSK
Sbjct: 175 KEFATKYNITKQTLSTTWKPSHANGCAVGLLMGDKLHLHPVHAVVQLRPTLQHLNSGGSK 234

Query: 765 GKNAISAGAKLQSKL 809
            KNA S GA    K+
Sbjct: 235 RKNAASTGANATVKI 249


>ref|XP_003612529.1| DNA-directed RNA polymerase III subunit RPC5 [Medicago truncatula]
           gi|355513864|gb|AES95487.1| DNA-directed RNA polymerase
           III subunit RPC5 [Medicago truncatula]
          Length = 487

 Score =  278 bits (711), Expect = 1e-72
 Identities = 155/270 (57%), Positives = 180/270 (66%), Gaps = 22/270 (8%)
 Frame = +3

Query: 63  MDLDDLEAPSQVPSRVSKFAXXXXXXXXXXXXXXXXXXXXXXXXXAAVPSSKPEPQEFDL 242
           MD DDLE PSQ  SRVS+FA                           VP  K EPQE DL
Sbjct: 1   MDFDDLEVPSQATSRVSRFA-------------PKSSKLKPKKEPQLVP--KIEPQEIDL 45

Query: 243 NAKKDEDGVEDTVAPTHTKSEPDGTAKMDVEPKSEAEDD--------------------- 359
            AK++ED +E T++PT  KSE +GT K++ E KSE E D                     
Sbjct: 46  TAKQNEDCIE-TISPTQMKSEHNGTVKVEAESKSEPEHDSRNVDSVDVEMTEAEKDSTQV 104

Query: 360 -PMDEDSAEDTVVREIDVFFTPSIDADTQLYVLQYPLRPCWRPYELDEQCEEVRLKPGSS 536
            PMDED+ EDTVVREIDVFF+PSID D +LYV++YPLRP WRPYELDEQCEEVRLKP S 
Sbjct: 105 NPMDEDNEEDTVVREIDVFFSPSIDDDIKLYVMEYPLRPSWRPYELDEQCEEVRLKPDSL 164

Query: 537 EVEVDLSIDLESSNIDKEFSSRLNYTKQTLSTLWKPPRANGCAVGLLMGDKLHLHPIHAV 716
           +V VDLS+DLESS +D+EFS+RL YTKQTLST WKP  ANGCAVGLLMGDKL LHPIHAV
Sbjct: 165 DVAVDLSVDLESSTVDEEFSNRLKYTKQTLSTTWKPSPANGCAVGLLMGDKLQLHPIHAV 224

Query: 717 VQLRPSLQHLNSGGSKGKNAISAGAKLQSK 806
           VQLRPS  +L+SGGS+  N   A + +Q+K
Sbjct: 225 VQLRPSRHYLDSGGSEKNNV--ATSNMQNK 252


>ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5 [Medicago truncatula]
           gi|358344405|ref|XP_003636280.1| DNA-directed RNA
           polymerase III subunit RPC5 [Medicago truncatula]
           gi|355502215|gb|AES83418.1| DNA-directed RNA polymerase
           III subunit RPC5 [Medicago truncatula]
           gi|355513299|gb|AES94922.1| DNA-directed RNA polymerase
           III subunit RPC5 [Medicago truncatula]
          Length = 683

 Score =  254 bits (649), Expect = 2e-65
 Identities = 144/260 (55%), Positives = 167/260 (64%), Gaps = 19/260 (7%)
 Frame = +3

Query: 63  MDLDDLEAPSQVPSRVSKFAXXXXXXXXXXXXXXXXXXXXXXXXXAAVPSSKPEPQEFDL 242
           MD DDL+AP  V  RVS+FA                         + VP S+P P    L
Sbjct: 1   MDFDDLDAP--VKPRVSRFAPKSSKFKPKKEEP------------SLVPKSEPPP----L 42

Query: 243 NAKKDEDGVEDTVAPTHTKSEPDGTAKMDVEPKSEAEDD-------------------PM 365
            + K E    D  APT  K EP+ + K D E K E + D                   PM
Sbjct: 43  ASAKTEPQEIDLTAPTPVKHEPNASVKTDAESKIEGKVDSRNVDVEMTEAVDGSREVNPM 102

Query: 366 DEDSAEDTVVREIDVFFTPSIDADTQLYVLQYPLRPCWRPYELDEQCEEVRLKPGSSEVE 545
           DE   EDTVVREIDV+F+PSID DT+LYV+QYPLRP WRPY+LDEQCEEVRLKPG+SEVE
Sbjct: 103 DE---EDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVE 159

Query: 546 VDLSIDLESSNIDKEFSSRLNYTKQTLSTLWKPPRANGCAVGLLMGDKLHLHPIHAVVQL 725
           VDLSIDLES N++K  + +L YTKQTLST WKPP ANGCAVGLLMGDKLHLHPIHAVVQL
Sbjct: 160 VDLSIDLESYNVEKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDKLHLHPIHAVVQL 219

Query: 726 RPSLQHLNSGGSKGKNAISA 785
           RPS  +L+SGGS+ KN  ++
Sbjct: 220 RPSRHYLDSGGSEKKNVATS 239


>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
           subunit RPC5-like [Cucumis sativus]
          Length = 702

 Score =  244 bits (624), Expect = 1e-62
 Identities = 132/258 (51%), Positives = 167/258 (64%), Gaps = 10/258 (3%)
 Frame = +3

Query: 63  MDLDDLEAPSQVPSRVSKFAXXXXXXXXXXXXXXXXXXXXXXXXXAAVPS---SKPEPQE 233
           MDLD L+  SQVPSR S+FA                            P    SKPE  E
Sbjct: 1   MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLTKLEPQPPISKPEVVE 60

Query: 234 FDLNAK-KDEDGVEDTVAPTHTKSEPDGTAKMDVEPKSEAE------DDPMDEDSAEDTV 392
            D   + K EDG E  V P    S P+G AKMDVE KSE E      DDP++ED++ED V
Sbjct: 61  PDARVEEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDAMVDDDPIEEDASEDMV 120

Query: 393 VREIDVFFTPSIDADTQLYVLQYPLRPCWRPYELDEQCEEVRLKPGSSEVEVDLSIDLES 572
           VREIDV FTPS+D++++LYVLQYPLRP WRPYE + +C+EVR+KP + EVEVDL++D+ES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIES 180

Query: 573 SNIDKEFSSRLNYTKQTLSTLWKPPRANGCAVGLLMGDKLHLHPIHAVVQLRPSLQHLNS 752
           +N D +        KQTL++ W+PP A   AVGLLMG+KLHL+P+HAVVQLRPS +HLNS
Sbjct: 181 NNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 753 GGSKGKNAISAGAKLQSK 806
           GG K KN + A + ++S+
Sbjct: 241 GGPKRKNNVRADSDVKSE 258


>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like
           [Cucumis sativus]
          Length = 702

 Score =  244 bits (624), Expect = 1e-62
 Identities = 132/258 (51%), Positives = 167/258 (64%), Gaps = 10/258 (3%)
 Frame = +3

Query: 63  MDLDDLEAPSQVPSRVSKFAXXXXXXXXXXXXXXXXXXXXXXXXXAAVPS---SKPEPQE 233
           MDLD L+  SQVPSR S+FA                            P    SKPE  E
Sbjct: 1   MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLTKLEPQPPISKPEVVE 60

Query: 234 FDLNAK-KDEDGVEDTVAPTHTKSEPDGTAKMDVEPKSEAE------DDPMDEDSAEDTV 392
            D   + K EDG E  V P    S P+G AKMDVE KSE E      DDP++ED++ED V
Sbjct: 61  PDARVEEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDAMVDDDPIEEDASEDMV 120

Query: 393 VREIDVFFTPSIDADTQLYVLQYPLRPCWRPYELDEQCEEVRLKPGSSEVEVDLSIDLES 572
           VREIDV FTPS+D++++LYVLQYPLRP WRPYE + +C+EVR+KP + EVEVDL++D+ES
Sbjct: 121 VREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIES 180

Query: 573 SNIDKEFSSRLNYTKQTLSTLWKPPRANGCAVGLLMGDKLHLHPIHAVVQLRPSLQHLNS 752
           +N D +        KQTL++ W+PP A   AVGLLMG+KLHL+P+HAVVQLRPS +HLNS
Sbjct: 181 NNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLNS 240

Query: 753 GGSKGKNAISAGAKLQSK 806
           GG K KN + A + ++S+
Sbjct: 241 GGPKRKNNVRADSDVKSE 258