BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00018817
         (1395 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003556327.1| PREDICTED: probable RNA polymerase II transc...   786   0.0  
ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transc...   781   0.0  
ref|XP_003591640.1| General transcription factor IIH subunit [Me...   776   0.0  
gb|ABE86684.1| general transcription factor IIH component, relat...   607   e-171
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   604   e-170

>ref|XP_003556327.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Glycine max]
          Length = 587

 Score =  786 bits (2031), Expect = 0.0
 Identities = 391/461 (84%), Positives = 422/461 (91%)
 Frame = +3

Query: 3    LQEDSKLQKLHMELVASGKLTESEFWATKKKLLDQDESRKSKQRTGFKNSLIFDTKPTSD 182
            LQEDSKLQ+LH ELVASGKLTESEFWATKKK+LDQDESRK KQ+ GFKNSLIFDTKP SD
Sbjct: 127  LQEDSKLQRLHKELVASGKLTESEFWATKKKMLDQDESRKLKQQIGFKNSLIFDTKPMSD 186

Query: 183  GRINQVKFQLTPEIKYQIFTLKPAVHQAFLKFVPSKLSEVDFWNKYFKAEYLHSTKNXXX 362
            GRINQVKFQLTPEIKYQIF LKPAVHQAFL FVP K++EVDFWNKYFKAEYLHSTKN   
Sbjct: 187  GRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPRKMNEVDFWNKYFKAEYLHSTKNAVA 246

Query: 363  XXXXXXXXXXXXVFLKDDEILEIEARKKVRRVDPSLDMEADQGDDYTHLPDHGIFRDGSK 542
                        VFLKDDEILEIEARKKVRRVDP+LDMEADQGDDYTHLPDHGIFRDGSK
Sbjct: 247  AAAEAAEDEDLAVFLKDDEILEIEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSK 306

Query: 543  EISEAQHLLYRRTLLQDLNRQSEVVLEGKTLDMEMEHPRTVAEVLARRKQESDGVMEEER 722
            +ISEAQ+ LY+RTLLQDLNRQ  VVLEGKTLDMEMEHPRTVAE+LARRKQE DGV++EER
Sbjct: 307  DISEAQNSLYKRTLLQDLNRQGAVVLEGKTLDMEMEHPRTVAEILARRKQECDGVVDEER 366

Query: 723  RNRISKMTQIEDLQSQDDHPFAPLCIKDPRDYFDSQQVNAVKTLDDSLAGKEQIRCSLGS 902
            +NRISKMT I+DLQ+QD+HP+APLCIKDPRDYFD QQ NAVKTLDDS  G EQ++CSLGS
Sbjct: 367  QNRISKMTLIDDLQAQDNHPYAPLCIKDPRDYFDFQQANAVKTLDDSQTGMEQMKCSLGS 426

Query: 903  EEAYGSLRASISKIKAMGLRDPLFSPEIALKVLNGLTKNISSTKSHLGRNSQESVLDILP 1082
            EEAYGSLRASISKIK  GLRDPLFSP++ALKVLNGLTKNISS K HLGR+SQ SVLDILP
Sbjct: 427  EEAYGSLRASISKIKTTGLRDPLFSPDVALKVLNGLTKNISSPKYHLGRSSQGSVLDILP 486

Query: 1083 DTTKEKLLDHWVCSQELLRHFWSSYPITTQSLMNKTRRLKDAISQIYSKLEEIKVSAQSD 1262
            +TTKE LLDHWVCSQELLRHFWSSYPITTQ+L+NKTRRLK++ISQIYSKLE+IKVSA+SD
Sbjct: 487  NTTKETLLDHWVCSQELLRHFWSSYPITTQNLVNKTRRLKESISQIYSKLEDIKVSAESD 546

Query: 1263 LRHQVSLVVHPMQQALNAALLHYDADIRKRNAKGQKPNGYV 1385
            LRH VSLVVHPMQQALNAALLHY+ADIRKRNA+GQKPNGYV
Sbjct: 547  LRHHVSLVVHPMQQALNAALLHYEADIRKRNARGQKPNGYV 587


>ref|XP_003535467.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Glycine max]
          Length = 604

 Score =  781 bits (2018), Expect = 0.0
 Identities = 391/461 (84%), Positives = 422/461 (91%)
 Frame = +3

Query: 3    LQEDSKLQKLHMELVASGKLTESEFWATKKKLLDQDESRKSKQRTGFKNSLIFDTKPTSD 182
            LQEDSKLQ+LH ELVASGKLTESEFWATKKKLLDQDESRK KQR GFKNSLIFDTKP SD
Sbjct: 150  LQEDSKLQRLHKELVASGKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFDTKPMSD 209

Query: 183  GRINQVKFQLTPEIKYQIFTLKPAVHQAFLKFVPSKLSEVDFWNKYFKAEYLHSTKNXXX 362
            GRINQVKFQLTPEIKYQIF LKPAVHQAFL FVPSK++EVDFWNKYFKAEYLHSTKN   
Sbjct: 210  GRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMNEVDFWNKYFKAEYLHSTKNAVA 269

Query: 363  XXXXXXXXXXXXVFLKDDEILEIEARKKVRRVDPSLDMEADQGDDYTHLPDHGIFRDGSK 542
                        VFLKDDEILEIEARKKVRRVDP+LDMEADQGDDYTHLPDHGIFRDGSK
Sbjct: 270  AAAEAAEDEDLAVFLKDDEILEIEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSK 329

Query: 543  EISEAQHLLYRRTLLQDLNRQSEVVLEGKTLDMEMEHPRTVAEVLARRKQESDGVMEEER 722
            +ISEAQ+ LY+RTLLQDLNRQ  VVLEGKTLDMEMEHPRTVAE+LARRKQ+      EER
Sbjct: 330  DISEAQNSLYKRTLLQDLNRQGAVVLEGKTLDMEMEHPRTVAEILARRKQD------EER 383

Query: 723  RNRISKMTQIEDLQSQDDHPFAPLCIKDPRDYFDSQQVNAVKTLDDSLAGKEQIRCSLGS 902
            RNRISKMT IEDLQ+QD+HP+APLCIKDPRDYFDSQQ NAVKTLDDS AG EQ++CSLGS
Sbjct: 384  RNRISKMTPIEDLQAQDNHPYAPLCIKDPRDYFDSQQANAVKTLDDSQAGMEQMKCSLGS 443

Query: 903  EEAYGSLRASISKIKAMGLRDPLFSPEIALKVLNGLTKNISSTKSHLGRNSQESVLDILP 1082
            EEAY SLRASISKIK  GLRDPLFSP++ALKVLNGLTKNI+STK HLG++SQESVLDILP
Sbjct: 444  EEAYDSLRASISKIKTTGLRDPLFSPDVALKVLNGLTKNITSTKYHLGKSSQESVLDILP 503

Query: 1083 DTTKEKLLDHWVCSQELLRHFWSSYPITTQSLMNKTRRLKDAISQIYSKLEEIKVSAQSD 1262
            ++TKEKLLDHWVCSQELLRHFWSSYP++TQ+L++KTRRLKD+ISQIYSKLE+IKVSA+SD
Sbjct: 504  NSTKEKLLDHWVCSQELLRHFWSSYPVSTQNLVSKTRRLKDSISQIYSKLEDIKVSAESD 563

Query: 1263 LRHQVSLVVHPMQQALNAALLHYDADIRKRNAKGQKPNGYV 1385
            LRH VSLVVHPMQQALNAALLHY+ADIRKRNA+GQKPNGYV
Sbjct: 564  LRHHVSLVVHPMQQALNAALLHYEADIRKRNARGQKPNGYV 604


>ref|XP_003591640.1| General transcription factor IIH subunit [Medicago truncatula]
            gi|355480688|gb|AES61891.1| General transcription factor
            IIH subunit [Medicago truncatula]
          Length = 586

 Score =  776 bits (2004), Expect = 0.0
 Identities = 393/461 (85%), Positives = 417/461 (90%)
 Frame = +3

Query: 3    LQEDSKLQKLHMELVASGKLTESEFWATKKKLLDQDESRKSKQRTGFKNSLIFDTKPTSD 182
            L EDSKL+K+HMELV S KLTESEFWATKKKLLDQDESRK KQR GFKNSLIFDTKPTSD
Sbjct: 127  LGEDSKLKKIHMELVMSDKLTESEFWATKKKLLDQDESRKLKQRIGFKNSLIFDTKPTSD 186

Query: 183  GRINQVKFQLTPEIKYQIFTLKPAVHQAFLKFVPSKLSEVDFWNKYFKAEYLHSTKNXXX 362
            GRINQVKFQLTPEIKYQIF LKPAVHQAFL FVPSK+SEVDFWNKYFKAEYLHSTKN   
Sbjct: 187  GRINQVKFQLTPEIKYQIFALKPAVHQAFLNFVPSKMSEVDFWNKYFKAEYLHSTKNAIA 246

Query: 363  XXXXXXXXXXXXVFLKDDEILEIEARKKVRRVDPSLDMEADQGDDYTHLPDHGIFRDGSK 542
                        VFLKDDEILE EARKKVRRVDP+LDMEADQGDDYTHLPDHGIFRDGSK
Sbjct: 247  AAAEAAEDEDLAVFLKDDEILENEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRDGSK 306

Query: 543  EISEAQHLLYRRTLLQDLNRQSEVVLEGKTLDMEMEHPRTVAEVLARRKQESDGVMEEER 722
            E SEAQ+ LYRRTLLQDLNRQSEVVLEGKTLD++MEHPRT  E LARRK ESDGV+ EER
Sbjct: 307  ETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEHPRTAVEALARRKHESDGVV-EER 365

Query: 723  RNRISKMTQIEDLQSQDDHPFAPLCIKDPRDYFDSQQVNAVKTLDDSLAGKEQIRCSLGS 902
            RNRISKM QIEDLQ+QDDHPFAPLCIKDPRDYFDSQQ NAVKTLDDSL+GKE+IRC+LGS
Sbjct: 366  RNRISKMAQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSLSGKEKIRCNLGS 425

Query: 903  EEAYGSLRASISKIKAMGLRDPLFSPEIALKVLNGLTKNISSTKSHLGRNSQESVLDILP 1082
            EEAYGSLR SIS IK MGLRDPL S E+A KVL+ LTKNISSTKS+LG++SQESVLDILP
Sbjct: 426  EEAYGSLRESISNIKTMGLRDPLLSHEVAFKVLSELTKNISSTKSNLGKSSQESVLDILP 485

Query: 1083 DTTKEKLLDHWVCSQELLRHFWSSYPITTQSLMNKTRRLKDAISQIYSKLEEIKVSAQSD 1262
            +TTKEKLLDHWVCSQELLRHFWSSYP+T QSL++K RRLKDAISQIYSKLEEIKVSA+SD
Sbjct: 486  NTTKEKLLDHWVCSQELLRHFWSSYPVTKQSLVDKARRLKDAISQIYSKLEEIKVSAKSD 545

Query: 1263 LRHQVSLVVHPMQQALNAALLHYDADIRKRNAKGQKPNGYV 1385
            LRHQVSLVVHPMQQAL+AALLHYDADI +RNAKG K NGYV
Sbjct: 546  LRHQVSLVVHPMQQALDAALLHYDADITRRNAKGSKRNGYV 586


>gb|ABE86684.1| general transcription factor IIH component, related [Medicago
            truncatula]
          Length = 370

 Score =  607 bits (1564), Expect = e-171
 Identities = 306/366 (83%), Positives = 329/366 (89%)
 Frame = +3

Query: 288  KLSEVDFWNKYFKAEYLHSTKNXXXXXXXXXXXXXXXVFLKDDEILEIEARKKVRRVDPS 467
            ++SEVDFWNKYFKAEYLHSTKN               VFLKDDEILE EARKKVRRVDP+
Sbjct: 6    QMSEVDFWNKYFKAEYLHSTKNAIAAAAEAAEDEDLAVFLKDDEILENEARKKVRRVDPT 65

Query: 468  LDMEADQGDDYTHLPDHGIFRDGSKEISEAQHLLYRRTLLQDLNRQSEVVLEGKTLDMEM 647
            LDMEADQGDDYTHLPDHGIFRDGSKE SEAQ+ LYRRTLLQDLNRQSEVVLEGKTLD++M
Sbjct: 66   LDMEADQGDDYTHLPDHGIFRDGSKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDM 125

Query: 648  EHPRTVAEVLARRKQESDGVMEEERRNRISKMTQIEDLQSQDDHPFAPLCIKDPRDYFDS 827
            EHPRT  E LARRK ESDGV+EE RRNRISKM QIEDLQ+QDDHPFAPLCIKDPRDYFDS
Sbjct: 126  EHPRTAVEALARRKHESDGVVEE-RRNRISKMAQIEDLQAQDDHPFAPLCIKDPRDYFDS 184

Query: 828  QQVNAVKTLDDSLAGKEQIRCSLGSEEAYGSLRASISKIKAMGLRDPLFSPEIALKVLNG 1007
            QQ NAVKTLDDSL+GKE+IRC+LGSEEAYGSLR SIS IK MGLRDPL S E+A KVL+ 
Sbjct: 185  QQANAVKTLDDSLSGKEKIRCNLGSEEAYGSLRESISNIKTMGLRDPLLSHEVAFKVLSE 244

Query: 1008 LTKNISSTKSHLGRNSQESVLDILPDTTKEKLLDHWVCSQELLRHFWSSYPITTQSLMNK 1187
            LTKNISSTKS+LG++SQESVLDILP+TTKEKLLDHWVCSQELLRHFWSSYP+T QSL++K
Sbjct: 245  LTKNISSTKSNLGKSSQESVLDILPNTTKEKLLDHWVCSQELLRHFWSSYPVTKQSLVDK 304

Query: 1188 TRRLKDAISQIYSKLEEIKVSAQSDLRHQVSLVVHPMQQALNAALLHYDADIRKRNAKGQ 1367
             RRLKDAISQIYSKLEEIKVSA+SDLRHQVSLVVHPMQQAL+AALLHYDADI +RNAKG 
Sbjct: 305  ARRLKDAISQIYSKLEEIKVSAKSDLRHQVSLVVHPMQQALDAALLHYDADITRRNAKGS 364

Query: 1368 KPNGYV 1385
            K NGYV
Sbjct: 365  KRNGYV 370


>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
            protein product [Vitis vinifera]
          Length = 602

 Score =  604 bits (1558), Expect = e-170
 Identities = 308/468 (65%), Positives = 367/468 (78%), Gaps = 7/468 (1%)
 Frame = +3

Query: 3    LQEDSKLQKLHMELVASGKLTESEFWATKKKLLDQDESRKSKQRTGFKNSLIFDTKPTSD 182
            L+EDS+LQKLH + V SG LTE+EFWAT+KKLLD + SR SKQR GFK+++I D KP +D
Sbjct: 135  LREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLKPLTD 194

Query: 183  GRINQVKFQLTPEIKYQIFTLKPAVHQAFLKFVPSKLSEVDFWNKYFKAEYLHSTKNXXX 362
            GR N+V F LTPEI +QIF  KPAVHQAFL FVP+K++E DFWNKY +AEYLH T+N   
Sbjct: 195  GRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAEYLHCTRNTVA 254

Query: 363  XXXXXXXXXXXXVFLKDDEILEIEARKKVRRVDPSLDMEADQGDDYTHLPDHGIFRDGSK 542
                        VFLK D+IL  EAR+K+RRVDP+LDMEADQGDDY HLPDHGIFRDGSK
Sbjct: 255  AAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTLDMEADQGDDYMHLPDHGIFRDGSK 314

Query: 543  EISEAQHLLYRRTLLQDLNRQSEVVLEGKTLDMEMEHPRTVAEVLARRK------QESDG 704
            EI + Q+  YRRTL QDLNR + VVLEG+ +D+E+E  RTVAE LA+ K      ++SDG
Sbjct: 315  EIIDPQYEQYRRTLSQDLNRHAAVVLEGRPIDVELEDTRTVAEALAKSKRVEAANEKSDG 374

Query: 705  VMEEERRNRISKMTQIEDLQSQDDHPFAPLCIKDPRDYFDSQQVNAVKTLDDSLAGKEQI 884
             +  ER  RIS+MT+IEDLQ+  D PFA LCIKDPRDYFDSQQ NA+KTL D+LAG +QI
Sbjct: 375  SVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQI 434

Query: 885  RCSLGSEEAYGSLRASISKIKAMGLRDPLFSPEIALKVLNGLTKNISSTKSHLGRNSQES 1064
            +CSL ++EAYGSLR  IS+IK++GL DP+  P+IALKVLNGLT+NISSTK HLG+N QES
Sbjct: 435  KCSLSTQEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQES 494

Query: 1065 VLDILPDTTKEKLLDHWVCSQELLRHFWSSYPITTQSLMNKTRRLKDAISQIYSKLEEIK 1244
            VLD LP  TKE+LL HW   QELLRHFWSSYPITT  L  K  RLKDA+SQIY KL+EIK
Sbjct: 495  VLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIK 554

Query: 1245 VSAQSDLRHQVSLVVHPMQQALNAALLHYDADIRKRNAK-GQKPNGYV 1385
             S QSD RHQVSL+V PM QAL+AA  HYDAD +KR+A+ G++PNG+V
Sbjct: 555  ESVQSDFRHQVSLLVQPMLQALDAAFAHYDADQQKRSARSGERPNGFV 602