BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00018384
         (886 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003628716.1| DNA-directed RNA polymerase [Medicago trunca...   253   3e-65
ref|XP_003531932.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   189   6e-46
ref|XP_003548663.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   187   3e-45
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   177   2e-42
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...   157   4e-36

>ref|XP_003628716.1| DNA-directed RNA polymerase [Medicago truncatula]
           gi|355522738|gb|AET03192.1| DNA-directed RNA polymerase
           [Medicago truncatula]
          Length = 259

 Score =  253 bits (647), Expect = 3e-65
 Identities = 152/261 (58%), Positives = 178/261 (68%), Gaps = 1/261 (0%)
 Frame = -2

Query: 780 MWTHFAKRASQRKFKLPSHSPSSTATRFSQQSSYFLEKITPPQTQTHVNPRCPVSGFAQV 601
           MW+  AKRAS R+F LPS S  ST+ RFS Q + F EKI           R P S F+QV
Sbjct: 1   MWSKLAKRASSRRFILPSQS--STSLRFSHQHN-FPEKIL----------RHPFSRFSQV 47

Query: 600 GIFTSINKLGGINFSFSEDLFGFPS-SLKLSRGQTSVAEEAVESTDTEEDYSGTSNEVHD 424
           GIFTS  KLG  NFSFSE  F F S SL   R   SVA EA+ESTDTE+D SG+   V  
Sbjct: 48  GIFTSEYKLGRSNFSFSEHPFSFSSISLNHFRTYGSVAAEAIESTDTEDDCSGSEEVVQK 107

Query: 423 LLEQMMKEEEDKGKRKPLLLEQQKNVTTTSYKDKVLRRRQIKMXXXXXXXXXXXXXXXXE 244
           LL+QM+ EEE   K+ P L E++KN    SYK K+LRRRQIK+                E
Sbjct: 108 LLDQMVIEEE---KKNPQLEEKKKN-KNNSYKYKMLRRRQIKIETEAWEEAAREYQELLE 163

Query: 243 DMCELKLVPNLPYMKSLFLGWFEPLRSAIVAEQEVCKESKQRMTHAPYFNDLPAEMMAVI 64
           DM E KL PNLPYMKSLFLGWFEPL++AI A+QE+CK++K R++HAPYFN+LP +MMAVI
Sbjct: 164 DMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQEICKDTKTRLSHAPYFNELPPDMMAVI 223

Query: 63  TMHKLTGLLMTNSNGVGTARV 1
           TMHKL GLLMTNSNGVG+ARV
Sbjct: 224 TMHKLMGLLMTNSNGVGSARV 244


>ref|XP_003531932.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
           [Glycine max]
          Length = 949

 Score =  189 bits (481), Expect = 6e-46
 Identities = 123/260 (47%), Positives = 150/260 (57%)
 Frame = -2

Query: 780 MWTHFAKRASQRKFKLPSHSPSSTATRFSQQSSYFLEKITPPQTQTHVNPRCPVSGFAQV 601
           MWT+ AKRAS           S+    F   S Y   +   PQT   +NP  P   F + 
Sbjct: 1   MWTNLAKRAS-----------STLRNTFRVSSLY--PRFCKPQTSKTINPY-PFQAFPKA 46

Query: 600 GIFTSINKLGGINFSFSEDLFGFPSSLKLSRGQTSVAEEAVESTDTEEDYSGTSNEVHDL 421
           G+  S        F F E             G +SVAE A+ESTDTE+DY    +EV  L
Sbjct: 47  GVSRS-------KFLFYE-------------GFSSVAE-AIESTDTEDDY----DEVQKL 81

Query: 420 LEQMMKEEEDKGKRKPLLLEQQKNVTTTSYKDKVLRRRQIKMXXXXXXXXXXXXXXXXED 241
           L+QM K E           +   + +++SYK K+L+RRQIK                 ED
Sbjct: 82  LQQMAKAEH----------KVDNSSSSSSYKYKLLKRRQIKSETEAWAEAAREYEELLED 131

Query: 240 MCELKLVPNLPYMKSLFLGWFEPLRSAIVAEQEVCKESKQRMTHAPYFNDLPAEMMAVIT 61
           M E KL PNLPYMKSLFLGWFEPLR+AI+A+QE+CK+SK RM+HAPYFNDLPA+MMAV+T
Sbjct: 132 MREQKLAPNLPYMKSLFLGWFEPLRNAILADQELCKDSKCRMSHAPYFNDLPADMMAVVT 191

Query: 60  MHKLTGLLMTNSNGVGTARV 1
           MHKL  LLMTN+NGVGTARV
Sbjct: 192 MHKLMALLMTNTNGVGTARV 211


>ref|XP_003548663.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
           [Glycine max]
          Length = 955

 Score =  187 bits (475), Expect = 3e-45
 Identities = 126/269 (46%), Positives = 154/269 (57%), Gaps = 9/269 (3%)
 Frame = -2

Query: 780 MWTHFAKRAS---QRKFKLPSHSPSSTATRFSQQSSYFLEKITPPQTQTHVNPRCPV-SG 613
           MWT+ AKRAS   +  F++ S SP                +   PQT       C    G
Sbjct: 1   MWTNLAKRASSTLRNNFRVSSLSP----------------RFCKPQT-------CKTFQG 37

Query: 612 FAQVGIFTSINKLGGINFSFSEDLFGFPSS-----LKLSRGQTSVAEEAVESTDTEEDYS 448
           F +VG+  S        F F E  F   SS     + L RG  SVAE A+ESTDTE+DY 
Sbjct: 38  FPEVGVSQS-------KFVFHEG-FSCSSSWSWSWMVLGRGHASVAE-AIESTDTEDDY- 87

Query: 447 GTSNEVHDLLEQMMKEEEDKGKRKPLLLEQQKNVTTTSYKDKVLRRRQIKMXXXXXXXXX 268
              +EV  LLE+M K E                V ++SYK K+L+RRQI+          
Sbjct: 88  ---DEVQKLLEEMAKAEH--------------KVDSSSYKYKLLKRRQIESETEAWAEAA 130

Query: 267 XXXXXXXEDMCELKLVPNLPYMKSLFLGWFEPLRSAIVAEQEVCKESKQRMTHAPYFNDL 88
                  EDM + KL PNLPYMKSLFLGWFEPLR+AI+A+Q++CK+SK RM+HAPYFNDL
Sbjct: 131 REYGELLEDMRDKKLAPNLPYMKSLFLGWFEPLRNAILADQDLCKDSKCRMSHAPYFNDL 190

Query: 87  PAEMMAVITMHKLTGLLMTNSNGVGTARV 1
           PA+MMAV+TMHKL  LLMTN+NGVGTARV
Sbjct: 191 PADMMAVVTMHKLMALLMTNANGVGTARV 219


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
           vinifera]
          Length = 978

 Score =  177 bits (450), Expect = 2e-42
 Identities = 114/265 (43%), Positives = 150/265 (56%), Gaps = 5/265 (1%)
 Frame = -2

Query: 780 MWTHFAKRASQRKFKLPSH----SPSSTATRFSQQSSYFLEKITPPQTQTHVNPRCPVSG 613
           MW + AK A  R+ +L S     SPS+  +RF     YF +K    ++Q HVN   PV+G
Sbjct: 1   MWRNLAKHAYTRRLQLSSQHSSFSPSNCTSRF-----YFPDKARALESQDHVNSLRPVAG 55

Query: 612 FAQVGIFT-SINKLGGINFSFSEDLFGFPSSLKLSRGQTSVAEEAVESTDTEEDYSGTSN 436
             ++G+ +   ++LG   F  ++    F       +G  S AE       +EED SG  +
Sbjct: 56  LRRIGVLSFQQDELGRPGFGVTKTPVNFFGLFGYQKGYASAAEAIA----SEEDMSGV-D 110

Query: 435 EVHDLLEQMMKEEEDKGKRKPLLLEQQKNVTTTSYKDKVLRRRQIKMXXXXXXXXXXXXX 256
           EV +L+E++ K   DK +++P L+           K  VLRRRQIKM             
Sbjct: 111 EVQELVEEVNKG--DKLEKQPKLIGG-----VAQGKHNVLRRRQIKMETEAWEEAAKEYR 163

Query: 255 XXXEDMCELKLVPNLPYMKSLFLGWFEPLRSAIVAEQEVCKESKQRMTHAPYFNDLPAEM 76
               DMCE KL PNLPY+KSLFLGWFEPLR  I AEQ++CK+ K R  +APYF+ LPA+M
Sbjct: 164 ELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADM 223

Query: 75  MAVITMHKLTGLLMTNSNGVGTARV 1
           MAVITMHKL GLLMT   G G+ARV
Sbjct: 224 MAVITMHKLMGLLMT-GEGNGSARV 247


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial;
           AltName: Full=NsRpoT-A; AltName: Full=T7
           bacteriophage-type single subunit RNA polymerase 1;
           Flags: Precursor gi|15824083|dbj|BAB69431.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1002

 Score =  157 bits (396), Expect = 4e-36
 Identities = 119/285 (41%), Positives = 147/285 (51%), Gaps = 25/285 (8%)
 Frame = -2

Query: 780 MWTHFAKRASQRKFKLPSHSPSSTATRFSQQSSYFLEKITPPQTQTHVNPRCPVSGFAQV 601
           MW + +K+A  RKF+   +S  S    FSQ SS F  K  P Q     +   P  G +Q 
Sbjct: 1   MWRYISKQAYSRKFR---NSHDSALLGFSQYSSSF-GKTRPLQCLCEESTTNPNLGLSQN 56

Query: 600 GIFTSINK----LGGI--------------NFSFSEDLFGFPSSLKLSRGQTSV------ 493
            IF+ I++    L GI              N  FS     F    K   G          
Sbjct: 57  SIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRSYGS 116

Query: 492 AEEAVESTDTEEDYSGTSNEVHDLLEQMMKEEEDKGKRKPLLLEQQKNVTTTSY-KDKVL 316
           A EA+ ST +EED     +E+ +L+E+M KE E    +  L  +Q K +      K  +L
Sbjct: 117 AAEAIAST-SEEDI----DEIQELIEEMNKENE--ALKTNLQPKQPKTIGGMGVGKYNLL 169

Query: 315 RRRQIKMXXXXXXXXXXXXXXXXEDMCELKLVPNLPYMKSLFLGWFEPLRSAIVAEQEVC 136
           RRRQIK+                 DMCE KL PNLPYMKSLFLGWFEPLR AI AEQ++C
Sbjct: 170 RRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLC 229

Query: 135 KESKQRMTHAPYFNDLPAEMMAVITMHKLTGLLMTNSNGVGTARV 1
            E K R  +AP+F+ LPAEMMAVITMHKL GLLMT   G G+ARV
Sbjct: 230 DEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMT-GGGTGSARV 273