BLASTX nr result

ID: Glycyrrhiza23_contig00017979 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00017979
         (480 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003593709.1| ATP-dependent RNA helicase dhx8 [Medicago tr...   200   1e-49
ref|XP_004148780.1| PREDICTED: probable ATP-dependent RNA helica...   188   4e-46
ref|XP_002305762.1| predicted protein [Populus trichocarpa] gi|2...   188   4e-46
ref|XP_002522527.1| ATP-dependent RNA helicase, putative [Ricinu...   186   2e-45
ref|XP_002276679.2| PREDICTED: probable ATP-dependent RNA helica...   184   6e-45

>ref|XP_003593709.1| ATP-dependent RNA helicase dhx8 [Medicago truncatula]
           gi|355482757|gb|AES63960.1| ATP-dependent RNA helicase
           dhx8 [Medicago truncatula]
          Length = 701

 Score =  200 bits (508), Expect = 1e-49
 Identities = 102/141 (72%), Positives = 112/141 (79%), Gaps = 1/141 (0%)
 Frame = -1

Query: 420 FWKPGTEKPEGRXXXXXXXXXVFLPGLHXXXXXXXXXXXXS-IEKQRQRLPVYKYRTAIL 244
           FWKPGTEKPE +         +F+PG              + I+KQRQRLPVYKYR AIL
Sbjct: 4   FWKPGTEKPEAQVVDDEEGGVLFIPGASSFSSSSSSGYGYASIDKQRQRLPVYKYRNAIL 63

Query: 243 YLVETHATTIIVGETGSGKTTQIPQYLIEAGWAAGGRLIACTQPRRLAVQAVASRVAQEM 64
           YLVETH+TTIIVGETGSGKTTQIPQYLIEAGWA+GGRLIACTQPRRLAVQAV+SRVAQEM
Sbjct: 64  YLVETHSTTIIVGETGSGKTTQIPQYLIEAGWASGGRLIACTQPRRLAVQAVSSRVAQEM 123

Query: 63  DVKLGEQVGYTIRFEDITKPD 1
            VKLG+QVGYTIRFED+T  D
Sbjct: 124 GVKLGDQVGYTIRFEDVTNQD 144


>ref|XP_004148780.1| PREDICTED: probable ATP-dependent RNA helicase DHX35-like [Cucumis
           sativus] gi|449515633|ref|XP_004164853.1| PREDICTED:
           probable ATP-dependent RNA helicase DHX35-like [Cucumis
           sativus]
          Length = 696

 Score =  188 bits (477), Expect = 4e-46
 Identities = 100/140 (71%), Positives = 107/140 (76%)
 Frame = -1

Query: 420 FWKPGTEKPEGRXXXXXXXXXVFLPGLHXXXXXXXXXXXXSIEKQRQRLPVYKYRTAILY 241
           FWKPGTEKP  R         +F    +              EKQRQRLPVYKYRTAILY
Sbjct: 4   FWKPGTEKP--RLLDDGEGGVLFFSSSYSSSSSGFGFSST--EKQRQRLPVYKYRTAILY 59

Query: 240 LVETHATTIIVGETGSGKTTQIPQYLIEAGWAAGGRLIACTQPRRLAVQAVASRVAQEMD 61
           LVETHATTIIVGETGSGKTTQIPQ+L EAGWA GGR+IACTQPRRLAVQAVASRVA+EM 
Sbjct: 60  LVETHATTIIVGETGSGKTTQIPQFLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 119

Query: 60  VKLGEQVGYTIRFEDITKPD 1
           VKLGE+VGYTIRFED+T PD
Sbjct: 120 VKLGEEVGYTIRFEDLTNPD 139


>ref|XP_002305762.1| predicted protein [Populus trichocarpa] gi|222848726|gb|EEE86273.1|
           predicted protein [Populus trichocarpa]
          Length = 702

 Score =  188 bits (477), Expect = 4e-46
 Identities = 100/139 (71%), Positives = 105/139 (75%)
 Frame = -1

Query: 420 FWKPGTEKPEGRXXXXXXXXXVFLPGLHXXXXXXXXXXXXSIEKQRQRLPVYKYRTAILY 241
           FWKPG+EKP             F P L             SI  QRQRLPVYKYRTAILY
Sbjct: 5   FWKPGSEKPR-ILEDEEGGVVFFGPPLSSAASSSSRFGYASIGSQRQRLPVYKYRTAILY 63

Query: 240 LVETHATTIIVGETGSGKTTQIPQYLIEAGWAAGGRLIACTQPRRLAVQAVASRVAQEMD 61
           LVETHATTIIVGETGSGKTTQIPQYL EAGWA GGR+IACTQPRRLAVQ VASRVA+EMD
Sbjct: 64  LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQTVASRVAEEMD 123

Query: 60  VKLGEQVGYTIRFEDITKP 4
           VKLGE+VGYTIRFED+T P
Sbjct: 124 VKLGEEVGYTIRFEDVTNP 142


>ref|XP_002522527.1| ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223538218|gb|EEF39827.1| ATP-dependent RNA helicase,
           putative [Ricinus communis]
          Length = 696

 Score =  186 bits (472), Expect = 2e-45
 Identities = 102/140 (72%), Positives = 107/140 (76%)
 Frame = -1

Query: 420 FWKPGTEKPEGRXXXXXXXXXVFLPGLHXXXXXXXXXXXXSIEKQRQRLPVYKYRTAILY 241
           FWKPGTEKP            VFL                SIEKQRQRLPVYKYRTAILY
Sbjct: 4   FWKPGTEKPP--LLDDEEGGVVFLSS--SVSSSSSGYGYVSIEKQRQRLPVYKYRTAILY 59

Query: 240 LVETHATTIIVGETGSGKTTQIPQYLIEAGWAAGGRLIACTQPRRLAVQAVASRVAQEMD 61
           LVETHAT++IVGETGSGKTTQIPQYL EAGWA GGRLIACTQPRRLAVQAVASRVA+EM 
Sbjct: 60  LVETHATSVIVGETGSGKTTQIPQYLKEAGWADGGRLIACTQPRRLAVQAVASRVAEEMG 119

Query: 60  VKLGEQVGYTIRFEDITKPD 1
           VKLGE+VGYTIRFED+T  D
Sbjct: 120 VKLGEEVGYTIRFEDLTNSD 139


>ref|XP_002276679.2| PREDICTED: probable ATP-dependent RNA helicase DHX35 [Vitis
           vinifera]
          Length = 695

 Score =  184 bits (467), Expect = 6e-45
 Identities = 99/138 (71%), Positives = 107/138 (77%)
 Frame = -1

Query: 420 FWKPGTEKPEGRXXXXXXXXXVFLPGLHXXXXXXXXXXXXSIEKQRQRLPVYKYRTAILY 241
           FWKPG+EKP  R         +F                 +IEKQRQRLPVYKYRTAILY
Sbjct: 4   FWKPGSEKP--RLLDDEEGGVLFYSA---SASSSSGFGYSNIEKQRQRLPVYKYRTAILY 58

Query: 240 LVETHATTIIVGETGSGKTTQIPQYLIEAGWAAGGRLIACTQPRRLAVQAVASRVAQEMD 61
           LVETHATTIIVGETGSGKTTQIPQYL EAGWA GGR+IACTQPRRLAVQAVASRVA+EM 
Sbjct: 59  LVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQAVASRVAEEMG 118

Query: 60  VKLGEQVGYTIRFEDITK 7
           VKLGE+VGYTIRFED++K
Sbjct: 119 VKLGEEVGYTIRFEDLSK 136


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