BLASTX nr result

ID: Glycyrrhiza23_contig00017037 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00017037
         (1016 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003623229.1| Pentatricopeptide repeat-containing protein ...    98   3e-18
ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containi...    89   2e-15
emb|CBI24253.3| unnamed protein product [Vitis vinifera]               72   2e-10
ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containi...    72   2e-10
ref|XP_002313262.1| predicted protein [Populus trichocarpa] gi|2...    59   2e-06

>ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355498244|gb|AES79447.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 770

 Score = 98.2 bits (243), Expect = 3e-18
 Identities = 46/52 (88%), Positives = 51/52 (98%)
 Frame = -3

Query: 1014 SKLTSTILACLCNISEDLDIKKILPKFSQHTSEGASIKCNELLMKLNKVHPE 859
            SKLTSTILACLCN+S+D+DI+KILPKFSQHTS GASIKCNELLMKLNKVHP+
Sbjct: 656  SKLTSTILACLCNMSKDVDIEKILPKFSQHTSVGASIKCNELLMKLNKVHPD 707


>ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein At4g28010-like
            [Glycine max]
          Length = 703

 Score = 88.6 bits (218), Expect = 2e-15
 Identities = 43/61 (70%), Positives = 53/61 (86%), Gaps = 3/61 (4%)
 Frame = -3

Query: 1014 SKLTSTILACLCNISEDLDIKKILPKFSQ---HTSEGASIKCNELLMKLNKVHPELQLFV 844
            SKLTSTILACLC++S +LD++KILPKFSQ   HTS+G +IKC+ELLM+LN  HPEL+L V
Sbjct: 642  SKLTSTILACLCHMSRNLDVEKILPKFSQQSEHTSKGTTIKCHELLMRLNNFHPELKLIV 701

Query: 843  A 841
            A
Sbjct: 702  A 702


>emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 32/54 (59%), Positives = 44/54 (81%)
 Frame = -3

Query: 1011 KLTSTILACLCNISEDLDIKKILPKFSQHTSEGASIKCNELLMKLNKVHPELQL 850
            K+ STIL CLC+  +++D+ ++LP F Q TSEGASI CNELLM+L++ HP+LQL
Sbjct: 526  KIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASISCNELLMQLHQSHPKLQL 579


>ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g28010-like
            [Vitis vinifera]
          Length = 728

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 32/54 (59%), Positives = 44/54 (81%)
 Frame = -3

Query: 1011 KLTSTILACLCNISEDLDIKKILPKFSQHTSEGASIKCNELLMKLNKVHPELQL 850
            K+ STIL CLC+  +++D+ ++LP F Q TSEGASI CNELLM+L++ HP+LQL
Sbjct: 672  KIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASISCNELLMQLHQSHPKLQL 725


>ref|XP_002313262.1| predicted protein [Populus trichocarpa] gi|222849670|gb|EEE87217.1|
            predicted protein [Populus trichocarpa]
          Length = 559

 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 26/57 (45%), Positives = 41/57 (71%)
 Frame = -3

Query: 1011 KLTSTILACLCNISEDLDIKKILPKFSQHTSEGASIKCNELLMKLNKVHPELQLFVA 841
            ++T++IL  LCN +E L + ++LP FS  +S G SI C++LLMK+ K +P+LQ+  A
Sbjct: 503  EITNSILTFLCNSAEHLHVMELLPNFSSESSGGTSISCDKLLMKIQKFNPKLQISAA 559


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