BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00016906
         (709 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE80156.1| Ribonuclease H [Medicago truncatula]                    86   1e-28
ref|XP_003613802.1| S-like ribonuclease [Medicago truncatula] gi...    87   2e-21
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...   104   2e-20
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...   101   2e-19
gb|ABD32401.2| Ribonuclease H [Medicago truncatula]                    94   4e-17

>gb|ABE80156.1| Ribonuclease H [Medicago truncatula]
          Length = 438

 Score = 85.9 bits (211), Expect(2) = 1e-28
 Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 1/168 (0%)
 Frame = +1

Query: 208 MAGSKAVLFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAINLGSTVQHHTVRQE 387
           M+ S   +F  G+W AW  +N  CL  E +   +L   +      I      + +    +
Sbjct: 209 MSSSLPDIFFGGLWWAWRHRNLMCLNNETMSLFRLCNNIVSAATYIKSAFDSEENVNHSD 268

Query: 388 RWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSI-GSPESLQAEP 564
           R+V W+      H+LNVD S +G     G+G +LR   G ++ G  G I  S + LQAE 
Sbjct: 269 RFVKWNNRNHHDHILNVDGSCLGTPSRTGYGGILRNSAGLFISGFSGFIPNSTDILQAEL 328

Query: 565 TTIYYGLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 708
           T I+  L    +     ++CYSDS LA+ L        H Y  LI  I
Sbjct: 329 TAIHQSLHMVIDSNMNDVMCYSDSLLAVNLIMNDTPRYHTYAVLIQNI 376



 Score = 66.6 bits (161), Expect(2) = 1e-28
 Identities = 30/56 (53%), Positives = 38/56 (67%)
 Frame = +2

Query: 2   NFLPTMQVLHRRGITQSPNCARCQGIVEETVLHCVRDCNLPGQMWQQLGF*DPVFF 169
           N +PT+ +LHRR I  SP CARC G  +ET LHCVRDC+    +WQ++GF    FF
Sbjct: 142 NVVPTLSLLHRRNIAPSPTCARC-GEEDETFLHCVRDCHFSRSIWQKIGFTGNDFF 196


>ref|XP_003613802.1| S-like ribonuclease [Medicago truncatula]
           gi|355515137|gb|AES96760.1| S-like ribonuclease
           [Medicago truncatula]
          Length = 552

 Score = 87.0 bits (214), Expect(2) = 2e-21
 Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 1/171 (0%)
 Frame = +1

Query: 199 QDAMAGSKAVLFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAINLGSTVQHHTV 378
           +D + G+ +  F+A +W AW  +N  CL   +   ++L+  ++ ++E      +V  + V
Sbjct: 320 KDGLLGAHSFTFVAIVWWAWRHRNIMCLSHGNWSLNRLVFNIQGMIETFKNCFSVNRNGV 379

Query: 379 RQERWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSI-GSPESLQ 555
            +ER++ W+ +     +LNVD S +G+    G+  LLR H G +L G  G I  S +   
Sbjct: 380 IEERFIKWNNNNHSCVILNVDGSCLGSPSRAGYDGLLRNHAGYYLSGFSGYIHNSSDIFY 439

Query: 556 AEPTTIYYGLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 708
            E   IY+GL  A E     +VCYSDS   + L        H YV LI  I
Sbjct: 440 VELFAIYHGLLLAKEKNVVDLVCYSDSMHCINLIKGPAMKFHNYVVLIQDI 490



 Score = 41.6 bits (96), Expect(2) = 2e-21
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +2

Query: 23  VLHRRGITQSPNCARCQGIVEETVLHCVRDCNLPGQMWQQLGF*DPVFF 169
           ++ RR I+ S  C+RC G  EET L CV DC     +W    +    FF
Sbjct: 263 LIDRRNISTSATCSRC-GFYEETFLQCVCDCEFSRNIWYHFNYNHSTFF 310


>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 869

 Score =  104 bits (260), Expect = 2e-20
 Identities = 69/217 (31%), Positives = 107/217 (49%), Gaps = 1/217 (0%)
 Frame = +1

Query: 61   CSMSRNCGRNCSSLCKGL*LTWTDVATVGILGPSFFFQH*DFISRHQDAMAGSKAVLFLA 240
            C +S     +C   C    + W  +         +FF   D     +  + GSKA+LF A
Sbjct: 595  CGVSDESVFHCIRDCPFSKIIWHHIG----FSEPYFFAVTDIEIWCKSGLIGSKAILFAA 650

Query: 241  GIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAINLGSTVQHHTVRQERWVIWHQSRAP 420
            G+W  W ++N++C+  E +   +L   +   V+ IN         +  +R+V W+ S   
Sbjct: 651  GLWWIWRSRNARCMSEESMLLQRLAANITYFVDDINSCFFQPLPVMVSDRYVKWNNSNFN 710

Query: 421  AHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSI-GSPESLQAEPTTIYYGLSTAW 597
              +LNVD S +G+    GFG L+R   G +L G  G +  S + L AE T IY G++TA 
Sbjct: 711  CTILNVDGSCIGSPIRAGFGGLIRNSVGFYLSGFLGFLPSSSDILLAELTAIYDGINTAI 770

Query: 598  EYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 708
            + G   +  YSDS L++ L TT+ S  H++ ALI  I
Sbjct: 771  DMGITDMAVYSDSLLSINLITTTSSKFHIHAALIQDI 807



 Score = 59.7 bits (143), Expect = 6e-07
 Identities = 26/54 (48%), Positives = 34/54 (62%)
 Frame = +2

Query: 8   LPTMQVLHRRGITQSPNCARCQGIVEETVLHCVRDCNLPGQMWQQLGF*DPVFF 169
           LPT  +LH R I  S  CARC G+ +E+V HC+RDC     +W  +GF +P FF
Sbjct: 575 LPTAALLHHRQIIASATCARC-GVSDESVFHCIRDCPFSKIIWHHIGFSEPYFF 627


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1296

 Score =  101 bits (251), Expect = 2e-19
 Identities = 74/223 (33%), Positives = 107/223 (47%), Gaps = 13/223 (5%)
 Frame = +1

Query: 79   CGRN------CSSLCKGL*LTWTDVATVGILGPSFFFQH*DFISRHQDAM----AGSKAV 228
            CG N      C   CK     W  +   G +  +FF      +S  QD +    +GS+A+
Sbjct: 1021 CGENDESFLHCVRDCKHSAAIWHKL---GFVTAAFFS-----VSSVQDWIRNFSSGSRAI 1072

Query: 229  LFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAINLGSTVQHHTVRQE--RWVIW 402
             FLAG+W +W  +N  CL  E  P  ++   +   + AI   + V+ + ++ +  R V W
Sbjct: 1073 TFLAGLWWSWRHRNLMCLSNETWPLTRISFRINDSINAIR-SAFVKSNVIQPDSARMVKW 1131

Query: 403  HQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSIG-SPESLQAEPTTIYY 579
            +Q     H+LNVD S +G     GFG + R + G +L G  G I  S + L AE T ++ 
Sbjct: 1132 NQGNHQCHILNVDGSCLGTPIRAGFGGIFRNNVGGYLSGYSGFISESTDILLAELTALHQ 1191

Query: 580  GLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 708
            GL  A E G   + CYSDS L + L T + S  H Y  LI  I
Sbjct: 1192 GLIMAAEMGIEELACYSDSLLTINLITRTTSKYHTYAVLIQDI 1234



 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
 Frame = +2

Query: 2    NFLPTMQVLHRRGITQSPNCARCQGIVEETVLHCVRDCNLPGQMWQQLGF*DPVFFFN-- 175
            N  PT+ +LH R +  +  C+RC G  +E+ LHCVRDC     +W +LGF    FF    
Sbjct: 999  NAAPTLSLLHHRKMAPAATCSRC-GENDESFLHCVRDCKHSAAIWHKLGFVTAAFFSVSS 1057

Query: 176  ----IRTLSAGTR---------MPWQGRKQFCFLRE 244
                IR  S+G+R           W+ R   C   E
Sbjct: 1058 VQDWIRNFSSGSRAITFLAGLWWSWRHRNLMCLSNE 1093


>gb|ABD32401.2| Ribonuclease H [Medicago truncatula]
          Length = 233

 Score = 93.6 bits (231), Expect = 4e-17
 Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 1/168 (0%)
 Frame = +1

Query: 208 MAGSKAVLFLAGIWRAWCAQNSKCLGGEDVPCHKLIREVKILVEAINLGSTVQHHTVRQE 387
           ++GS++ +FLAG+W  W  +N  CL  E +   +L   +    +A N     + +    +
Sbjct: 4   ISGSRSSIFLAGLWWVWRHRNLMCLNNETLSLFRLCNNIISAADAANSAFNGEENPPHSD 63

Query: 388 RWVIWHQSRAPAHVLNVDESSMGNLGPVGFGRLLRTHEGEWLVGCYGSI-GSPESLQAEP 564
           R V W+       +LNVD S +G     G+G +LR   G ++ G  G I  S + L AE 
Sbjct: 64  RLVKWNNRNHQDFILNVDGSCIGTPPRTGYGGVLRNSAGLFISGFSGLIPNSADILLAEL 123

Query: 565 TTIYYGLSTAWEYG*RRIVCYSDSRLALELSTTSVSANHVYVALISAI 708
           T I+ GL    +     I+CYSDS LA+ L        H+Y ALI  I
Sbjct: 124 TAIHQGLKLVTDLNVNEIMCYSDSLLAVNLIANDTPRYHIYAALIQNI 171