BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00016823
         (215 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE80156.1| Ribonuclease H [Medicago truncatula]                    66   3e-09
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    62   4e-08
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...    56   3e-06
ref|XP_003612606.1| Replication protein A1-like protein [Medicag...    55   4e-06

>gb|ABE80156.1| Ribonuclease H [Medicago truncatula]
          Length = 438

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 28/62 (45%), Positives = 38/62 (61%)
 Frame = +2

Query: 5   LPTMGVLFKRGITQSPFCTRCGSHTEETVLHCVRDCNSPRQMWQQLGMVSPAFFQHQNFE 184
           +PT+ +L +R I  SP C RCG   +ET LHCVRDC+  R +WQ++G     FF   +  
Sbjct: 144 VPTLSLLHRRNIAPSPTCARCGEE-DETFLHCVRDCHFSRSIWQKIGFTGNDFFTATSAH 202

Query: 185 DW 190
           DW
Sbjct: 203 DW 204


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1296

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 27/68 (39%), Positives = 42/68 (61%)
 Frame = +2

Query: 8    PTMGVLFKRGITQSPFCTRCGSHTEETVLHCVRDCNSPRQMWQQLGMVSPAFFQHQNFED 187
            PT+ +L  R +  +  C+RCG + +E+ LHCVRDC     +W +LG V+ AFF   + +D
Sbjct: 1002 PTLSLLHHRKMAPAATCSRCGEN-DESFLHCVRDCKHSAAIWHKLGFVTAAFFSVSSVQD 1060

Query: 188  WQ*DFMTG 211
            W  +F +G
Sbjct: 1061 WIRNFSSG 1068


>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 869

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 26/63 (41%), Positives = 35/63 (55%)
 Frame = +2

Query: 2   SLPTMGVLFKRGITQSPFCTRCGSHTEETVLHCVRDCNSPRQMWQQLGMVSPAFFQHQNF 181
           SLPT  +L  R I  S  C RCG  ++E+V HC+RDC   + +W  +G   P FF   + 
Sbjct: 574 SLPTAALLHHRQIIASATCARCGV-SDESVFHCIRDCPFSKIIWHHIGFSEPYFFAVTDI 632

Query: 182 EDW 190
           E W
Sbjct: 633 EIW 635


>ref|XP_003612606.1| Replication protein A1-like protein [Medicago truncatula]
           gi|355513941|gb|AES95564.1| Replication protein A1-like
           protein [Medicago truncatula]
          Length = 708

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +2

Query: 2   SLPTMGVLFKRGITQSPFCTRCGSHTEETVLHCVRDCNSPRQMWQQLGMVSP-AFFQHQN 178
           S+ T+ +L    I+ S  C RCG H E T LHCVRDC   + +W Q G   P  FF +++
Sbjct: 42  SVHTISLLNHGNISHSTVCNRCGIHNE-TFLHCVRDCIHSKPLWHQSGFTHPDFFFSNED 100

Query: 179 FEDW 190
             DW
Sbjct: 101 IIDW 104