BLASTX nr result
ID: Glycyrrhiza23_contig00016610
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00016610
(1083 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003610579.1| Pentatricopeptide repeat-containing protein ... 540 e-151
ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containi... 525 e-147
ref|XP_003549331.1| PREDICTED: pentatricopeptide repeat-containi... 518 e-144
ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containi... 492 e-137
emb|CBI25753.3| unnamed protein product [Vitis vinifera] 492 e-137
>ref|XP_003610579.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511634|gb|AES92776.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 706
Score = 540 bits (1391), Expect = e-151
Identities = 270/359 (75%), Positives = 304/359 (84%), Gaps = 9/359 (2%)
Frame = +2
Query: 32 MAYRLCSTPSALLHDLPSISSSSRKFKVRNFIPSFQTPSS--------LTSQSKTFLHAN 187
M+Y LCS+ S L HD ++ SSRKFK+RNF SF TPSS LT SKT LH
Sbjct: 1 MSYHLCSSSSPLFHD--PLTISSRKFKLRNFPSSFHTPSSSSSSSSSSLTPHSKTLLH-- 56
Query: 188 HVSLQEPIPQQLAQDINSEEHANSEDPLGKS-SSKSSYIWVNPKSPRAKQLGKISYDAKY 364
+SLQE IPQQ QD NS++ A ++P+G S SSKSSYIWVNPKSPRAKQLGK SYDA+Y
Sbjct: 57 -ISLQESIPQQQPQDANSQKDAKFDNPIGNSTSSKSSYIWVNPKSPRAKQLGKKSYDARY 115
Query: 365 TSLVNLARSLDSCNPTEHDVSEVLKGLGDKVLEQDAVIVINNMVNSVTAPLVLEYFQRKI 544
+SLV L+ +LDSC PTEHDVS++LK LGDKV+EQDAVI+INNM NSV P VL+Y QRK
Sbjct: 116 SSLVKLSNALDSCEPTEHDVSQILKCLGDKVIEQDAVIIINNMENSVVVPFVLQYVQRKS 175
Query: 545 TPTREVILYNVTLKVFRKCKDLDGAEKLFDQMLERGVRPDNITFSTIISCARMCYLPNKA 724
PTREVILYNVTLKVFRKCKDLDGAEK+F +ML+RGV+PDN+TFSTIISCAR CYLP+KA
Sbjct: 176 IPTREVILYNVTLKVFRKCKDLDGAEKVFGEMLQRGVKPDNVTFSTIISCARSCYLPDKA 235
Query: 725 VEWYEKMPSFGCEPDDLTYSVMIDAYGRAGNIDMALNLYDRARTEKWRIDTVTFSTLIKM 904
VEW+EKMP FGCEPDD+TYSVMID+YG+AG+IDMALNLYDRARTEKWRI+ TFSTLIKM
Sbjct: 236 VEWFEKMPLFGCEPDDVTYSVMIDSYGKAGDIDMALNLYDRARTEKWRIEPATFSTLIKM 295
Query: 905 YGLAGNYDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQAKTIYKEMTNNGFSP 1081
YG+AGNYDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQA+TIYKEM NN P
Sbjct: 296 YGVAGNYDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEMINNDILP 354
Score = 72.0 bits (175), Expect = 2e-10
Identities = 42/176 (23%), Positives = 91/176 (51%), Gaps = 1/176 (0%)
Frame = +2
Query: 557 EVILYNVTLKVFRKCKDLDGAEKLFDQMLERGVRPDNITFSTIISCARMCYLPNKAVEWY 736
E ++ +K++ + DG ++++M GV+P+ + ++T++ P +A Y
Sbjct: 285 EPATFSTLIKMYGVAGNYDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQARTIY 344
Query: 737 EKMPSFGCEPDDLTYSVMIDAYGRAGNIDMALNLYDRARTEKWRIDTVTFSTLIKMYGLA 916
++M + P+ TY+ ++ AYGRA + AL +Y R ++ ++T +++L+ M
Sbjct: 345 KEMINNDILPNRATYASLLHAYGRARFCEDALVVYREMREKEMDLNTHLYNSLLAMCADV 404
Query: 917 GNYDGCLNVYEEMKALGV-KPNLVVYNTLLDAMGRAKRPWQAKTIYKEMTNNGFSP 1081
G D ++E+MK+ P+ +++L+ + R +A+ + EM +GF P
Sbjct: 405 GYTDLAFEIFEDMKSSDTCSPDSWTFSSLITIYSCSGRVSEAERMMNEMIESGFEP 460
>ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 685
Score = 525 bits (1353), Expect = e-147
Identities = 267/352 (75%), Positives = 293/352 (83%), Gaps = 2/352 (0%)
Frame = +2
Query: 32 MAYRLCSTPSALLHDLPSISSSS--RKFKVRNFIPSFQTPSSLTSQSKTFLHANHVSLQE 205
MAY LCS+PS+L HDLPSISSSS RKFK+RN + SSLT SKT LH + + E
Sbjct: 1 MAYNLCSSPSSLFHDLPSISSSSSSRKFKLRNL-----SSSSLTPHSKTLLHVS-LHEHE 54
Query: 206 PIPQQLAQDINSEEHANSEDPLGKSSSKSSYIWVNPKSPRAKQLGKISYDAKYTSLVNLA 385
PIP+ L D S SSSKS+YIWVNP+SPRAKQL SYDA+YTSLVNLA
Sbjct: 55 PIPEHLPPDAKSS-----------SSSKSNYIWVNPRSPRAKQLESRSYDARYTSLVNLA 103
Query: 386 RSLDSCNPTEHDVSEVLKGLGDKVLEQDAVIVINNMVNSVTAPLVLEYFQRKITPTREVI 565
SLDSCNP++ DVS VLK LGD+V+EQDAVIVINNM NS P VL YFQR+I PTREVI
Sbjct: 104 HSLDSCNPSQEDVSLVLKDLGDRVIEQDAVIVINNMSNSRVVPFVLNYFQRRIRPTREVI 163
Query: 566 LYNVTLKVFRKCKDLDGAEKLFDQMLERGVRPDNITFSTIISCARMCYLPNKAVEWYEKM 745
LYNVTLKVFRK KDLD EKLFD+ML+RGVRPDN+TFSTIISCAR+C LPNKAVEW+EKM
Sbjct: 164 LYNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVTFSTIISCARICSLPNKAVEWFEKM 223
Query: 746 PSFGCEPDDLTYSVMIDAYGRAGNIDMALNLYDRARTEKWRIDTVTFSTLIKMYGLAGNY 925
SFGCEPDD+TYS MIDAYGRAGNIDMAL LYDRARTEKWR+DTVTFSTLIKMYGLAGNY
Sbjct: 224 SSFGCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAGNY 283
Query: 926 DGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQAKTIYKEMTNNGFSP 1081
DGCLNVY+EMK LGVKPN+V+YNTLLDAMGRAKRPWQAK+IY EMTNNGFSP
Sbjct: 284 DGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSP 335
Score = 77.0 bits (188), Expect = 7e-12
Identities = 45/166 (27%), Positives = 86/166 (51%)
Frame = +2
Query: 563 ILYNVTLKVFRKCKDLDGAEKLFDQMLERGVRPDNITFSTIISCARMCYLPNKAVEWYEK 742
+ Y+ + + + ++D A +L+D+ R D +TFST+I + + + Y++
Sbjct: 233 VTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAGNYDGCLNVYQE 292
Query: 743 MPSFGCEPDDLTYSVMIDAYGRAGNIDMALNLYDRARTEKWRIDTVTFSTLIKMYGLAGN 922
M G +P+ + Y+ ++DA GRA A ++Y + + VT+++L++ YG
Sbjct: 293 MKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASLLRAYGRGRY 352
Query: 923 YDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQAKTIYKEM 1060
+ L VY+EMK G++ N +YNTLL +A I+++M
Sbjct: 353 SEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDM 398
Score = 63.2 bits (152), Expect = 1e-07
Identities = 43/211 (20%), Positives = 87/211 (41%), Gaps = 36/211 (17%)
Frame = +2
Query: 557 EVILYNVTLKVFRKCKDLDGAEKLFDQMLERGVRPDNITFSTIISCARMCYLPNKAVEWY 736
+ + ++ +K++ + DG ++ +M GV+P+ + ++T++ P +A Y
Sbjct: 266 DTVTFSTLIKMYGLAGNYDGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIY 325
Query: 737 EKMPSFGCEPDDLTYSVMIDAYGRAGNIDMALNLYDRARTEKWRI--------------- 871
+M + G P+ +TY+ ++ AYGR + AL +Y + + +
Sbjct: 326 TEMTNNGFSPNWVTYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADL 385
Query: 872 ---------------------DTVTFSTLIKMYGLAGNYDGCLNVYEEMKALGVKPNLVV 988
D+ TFS+LI +Y GN + EM G +P + V
Sbjct: 386 GLANEAFEIFEDMKTSATCLCDSWTFSSLITIYSCTGNVSEAERMLNEMIESGSQPTIFV 445
Query: 989 YNTLLDAMGRAKRPWQAKTIYKEMTNNGFSP 1081
+L+ G+ R + ++ + G SP
Sbjct: 446 LTSLVQCYGKVGRTDDVVKTFNQLLDLGISP 476
>ref|XP_003549331.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 689
Score = 518 bits (1334), Expect = e-144
Identities = 266/353 (75%), Positives = 292/353 (82%), Gaps = 3/353 (0%)
Frame = +2
Query: 32 MAYRLCSTPSALLHDLPSISSSS---RKFKVRNFIPSFQTPSSLTSQSKTFLHANHVSLQ 202
MAY LCS+PS+L HDLPSISSSS RKFK+RN FQ S T SKT LH VSL
Sbjct: 1 MAYNLCSSPSSLFHDLPSISSSSSSCRKFKLRNSSSFFQPSPSPTPHSKTLLH---VSLH 57
Query: 203 EPIPQQLAQDINSEEHANSEDPLGKSSSKSSYIWVNPKSPRAKQLGKISYDAKYTSLVNL 382
EPIP+ L HANS SSSKS+YIWVNP+SPRAKQL + SYDA+YTSLVNL
Sbjct: 58 EPIPEHLPP------HANSS-----SSSKSNYIWVNPRSPRAKQLERRSYDARYTSLVNL 106
Query: 383 ARSLDSCNPTEHDVSEVLKGLGDKVLEQDAVIVINNMVNSVTAPLVLEYFQRKITPTREV 562
A SLDSCNP++ DVS VLK L +V+EQDAVIVINNM N P VL YFQR+I PTREV
Sbjct: 107 ALSLDSCNPSQEDVSLVLKDLWGRVIEQDAVIVINNMSNPRVVPFVLNYFQRRIRPTREV 166
Query: 563 ILYNVTLKVFRKCKDLDGAEKLFDQMLERGVRPDNITFSTIISCARMCYLPNKAVEWYEK 742
ILYNVTLKVFRK KDLD EKLFD+ML+RGVRPDN++FSTIISCAR+C LPNKAVEW+EK
Sbjct: 167 ILYNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVSFSTIISCARICSLPNKAVEWFEK 226
Query: 743 MPSFGCEPDDLTYSVMIDAYGRAGNIDMALNLYDRARTEKWRIDTVTFSTLIKMYGLAGN 922
MPSF CEPDD+TYS MIDAYGRAGNIDMAL LYDRARTEKWR+D+VTFSTLIKMYGLAGN
Sbjct: 227 MPSFRCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDSVTFSTLIKMYGLAGN 286
Query: 923 YDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQAKTIYKEMTNNGFSP 1081
YDGCLNVY+EMKALGVK N+V+YNTLLDAMGRAKRPWQAK+IY EMTNNGF P
Sbjct: 287 YDGCLNVYQEMKALGVKSNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFLP 339
Score = 73.2 bits (178), Expect = 1e-10
Identities = 40/147 (27%), Positives = 79/147 (53%)
Frame = +2
Query: 563 ILYNVTLKVFRKCKDLDGAEKLFDQMLERGVRPDNITFSTIISCARMCYLPNKAVEWYEK 742
+ Y+ + + + ++D A +L+D+ R D++TFST+I + + + Y++
Sbjct: 237 VTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDSVTFSTLIKMYGLAGNYDGCLNVYQE 296
Query: 743 MPSFGCEPDDLTYSVMIDAYGRAGNIDMALNLYDRARTEKWRIDTVTFSTLIKMYGLAGN 922
M + G + + + Y+ ++DA GRA A ++Y + + T+++L++ YG
Sbjct: 297 MKALGVKSNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFLPNWATYASLLRAYGRGRY 356
Query: 923 YDGCLNVYEEMKALGVKPNLVVYNTLL 1003
+ L VY+EMK G++ N +YNTLL
Sbjct: 357 SEDALFVYKEMKEKGMEMNTHLYNTLL 383
Score = 63.2 bits (152), Expect = 1e-07
Identities = 38/174 (21%), Positives = 85/174 (48%), Gaps = 1/174 (0%)
Frame = +2
Query: 563 ILYNVTLKVFRKCKDLDGAEKLFDQMLERGVRPDNITFSTIISCARMCYLPNKAVEWYEK 742
+ ++ +K++ + DG ++ +M GV+ + + ++T++ P +A Y +
Sbjct: 272 VTFSTLIKMYGLAGNYDGCLNVYQEMKALGVKSNMVIYNTLLDAMGRAKRPWQAKSIYTE 331
Query: 743 MPSFGCEPDDLTYSVMIDAYGRAGNIDMALNLYDRARTEKWRIDTVTFSTLIKMYGLAGN 922
M + G P+ TY+ ++ AYGR + AL +Y + + ++T ++TL+ M G
Sbjct: 332 MTNNGFLPNWATYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGL 391
Query: 923 YDGCLNVYEEMKALGV-KPNLVVYNTLLDAMGRAKRPWQAKTIYKEMTNNGFSP 1081
D ++E+MK+ + +++L+ + +A+ + EM +GF P
Sbjct: 392 ADDAFKIFEDMKSSATCLCDSWTFSSLITIYSCSGNVSEAERMLNEMIESGFQP 445
Score = 59.7 bits (143), Expect = 1e-06
Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
Frame = +2
Query: 560 VILYNVTLKVFRKCKDLDGAEKLFDQMLERGVRPDNITFSTIISCARMCYLPNKAVEWYE 739
+++YN L + K A+ ++ +M G P+ T+++++ A+ Y+
Sbjct: 306 MVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFLPNWATYASLLRAYGRGRYSEDALFVYK 365
Query: 740 KMPSFGCEPDDLTYSVMIDAYGRAGNIDMALNLYDRARTEKWRI-DTVTFSTLIKMYGLA 916
+M G E + Y+ ++ G D A +++ ++ + D+ TFS+LI +Y +
Sbjct: 366 EMKEKGMEMNTHLYNTLLAMCADLGLADDAFKIFEDMKSSATCLCDSWTFSSLITIYSCS 425
Query: 917 GNYDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQAKTIYKEMTNNGFSP 1081
GN + EM G +P + V +L+ G+ R + ++ + G SP
Sbjct: 426 GNVSEAERMLNEMIESGFQPTIFVLTSLVQCYGKVGRTDDVLKTFNQLLDLGISP 480
>ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic [Vitis vinifera]
Length = 701
Score = 492 bits (1266), Expect = e-137
Identities = 244/353 (69%), Positives = 289/353 (81%), Gaps = 3/353 (0%)
Frame = +2
Query: 32 MAYRLCSTPSALLHD---LPSISSSSRKFKVRNFIPSFQTPSSLTSQSKTFLHANHVSLQ 202
MAY LCS+PS+L HD L + S SRK ++R+F P+SL+ S+TFL HVSL+
Sbjct: 1 MAYHLCSSPSSLCHDHHYLHNSLSFSRKSRLRSFNSFSFKPNSLSLHSRTFLQITHVSLE 60
Query: 203 EPIPQQLAQDINSEEHANSEDPLGKSSSKSSYIWVNPKSPRAKQLGKISYDAKYTSLVNL 382
+PIPQ+ Q ++ NS+DP K+ S YIWVNP+SPRA +L + SYDA+Y SLV +
Sbjct: 61 DPIPQE-TQKADASNPPNSQDPDRKTKS---YIWVNPRSPRASKLRQHSYDARYASLVKI 116
Query: 383 ARSLDSCNPTEHDVSEVLKGLGDKVLEQDAVIVINNMVNSVTAPLVLEYFQRKITPTREV 562
A SLDSC TE DVS+VL+ LGDK+LEQDAVIV+NNM N TA L +F++++ P+REV
Sbjct: 117 AESLDSCEATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREV 176
Query: 563 ILYNVTLKVFRKCKDLDGAEKLFDQMLERGVRPDNITFSTIISCARMCYLPNKAVEWYEK 742
ILYNVTLKVFRKC++LD AEKLFD+MLERGV+PDNITFSTIISCAR+ LPNKAVEW+EK
Sbjct: 177 ILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEK 236
Query: 743 MPSFGCEPDDLTYSVMIDAYGRAGNIDMALNLYDRARTEKWRIDTVTFSTLIKMYGLAGN 922
MP FGC PDD+TYS MIDAYGRAGN+DMAL LYDRARTEKWRID VTFSTLI++YG++GN
Sbjct: 237 MPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGN 296
Query: 923 YDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQAKTIYKEMTNNGFSP 1081
+DGCLNVYEEMKALGVKPNLV+YNTLLDAMGRAKRPWQAK IYKEMTNNG P
Sbjct: 297 FDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQP 349
>emb|CBI25753.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 492 bits (1266), Expect = e-137
Identities = 244/353 (69%), Positives = 289/353 (81%), Gaps = 3/353 (0%)
Frame = +2
Query: 32 MAYRLCSTPSALLHD---LPSISSSSRKFKVRNFIPSFQTPSSLTSQSKTFLHANHVSLQ 202
MAY LCS+PS+L HD L + S SRK ++R+F P+SL+ S+TFL HVSL+
Sbjct: 1 MAYHLCSSPSSLCHDHHYLHNSLSFSRKSRLRSFNSFSFKPNSLSLHSRTFLQITHVSLE 60
Query: 203 EPIPQQLAQDINSEEHANSEDPLGKSSSKSSYIWVNPKSPRAKQLGKISYDAKYTSLVNL 382
+PIPQ+ Q ++ NS+DP K+ S YIWVNP+SPRA +L + SYDA+Y SLV +
Sbjct: 61 DPIPQE-TQKADASNPPNSQDPDRKTKS---YIWVNPRSPRASKLRQHSYDARYASLVKI 116
Query: 383 ARSLDSCNPTEHDVSEVLKGLGDKVLEQDAVIVINNMVNSVTAPLVLEYFQRKITPTREV 562
A SLDSC TE DVS+VL+ LGDK+LEQDAVIV+NNM N TA L +F++++ P+REV
Sbjct: 117 AESLDSCEATEEDVSQVLRCLGDKILEQDAVIVLNNMTNPETALLAFGFFRKRLKPSREV 176
Query: 563 ILYNVTLKVFRKCKDLDGAEKLFDQMLERGVRPDNITFSTIISCARMCYLPNKAVEWYEK 742
ILYNVTLKVFRKC++LD AEKLFD+MLERGV+PDNITFSTIISCAR+ LPNKAVEW+EK
Sbjct: 177 ILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEK 236
Query: 743 MPSFGCEPDDLTYSVMIDAYGRAGNIDMALNLYDRARTEKWRIDTVTFSTLIKMYGLAGN 922
MP FGC PDD+TYS MIDAYGRAGN+DMAL LYDRARTEKWRID VTFSTLI++YG++GN
Sbjct: 237 MPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGN 296
Query: 923 YDGCLNVYEEMKALGVKPNLVVYNTLLDAMGRAKRPWQAKTIYKEMTNNGFSP 1081
+DGCLNVYEEMKALGVKPNLV+YNTLLDAMGRAKRPWQAK IYKEMTNNG P
Sbjct: 297 FDGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQP 349