BLASTX nr result

ID: Glycyrrhiza23_contig00014617 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00014617
         (433 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003540216.1| PREDICTED: putative SWI/SNF-related matrix-a...   189   2e-46
ref|XP_003551078.1| PREDICTED: putative SWI/SNF-related matrix-a...   184   8e-45
ref|XP_002527439.1| DNA repair helicase rad5,16, putative [Ricin...   135   3e-30
ref|XP_002270098.1| PREDICTED: putative SWI/SNF-related matrix-a...   125   5e-27
gb|AAS79594.1| putative DNA repair protein [Ipomoea trifida] gi|...   122   4e-26

>ref|XP_003540216.1| PREDICTED: putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 2-like [Glycine max]
          Length = 1008

 Score =  189 bits (480), Expect = 2e-46
 Identities = 101/145 (69%), Positives = 111/145 (76%), Gaps = 1/145 (0%)
 Frame = -1

Query: 433 GSKVTDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHT-PKFKPTRTINT 257
           GSKV+DHHLSTVRSIVGSEF+DMDIIRALHMAKNDVTAAINIIFDTHT PKFK TR  N 
Sbjct: 2   GSKVSDHHLSTVRSIVGSEFSDMDIIRALHMAKNDVTAAINIIFDTHTAPKFKATRPTNP 61

Query: 256 TQRVSPPKNSTHHAAVTASSNHNADKGDSDNCPVGSDDWWFVGSGEVAGLSTCKGRTVKC 77
              VSPP+ +     VTA+SNH   +  SD+     DDWWFV  GE+ GLSTCKGRT+  
Sbjct: 62  PP-VSPPEPTPPAPTVTANSNHRVGERHSDS---NRDDWWFVSCGEMTGLSTCKGRTISS 117

Query: 76  GDAVSFKFPTKTLSASPSPAGKGFG 2
           G+ V FKFP K LSASPSP GKGFG
Sbjct: 118 GETVVFKFPAKKLSASPSP-GKGFG 141


>ref|XP_003551078.1| PREDICTED: putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 2-like [Glycine max]
          Length = 1009

 Score =  184 bits (466), Expect = 8e-45
 Identities = 99/145 (68%), Positives = 111/145 (76%), Gaps = 1/145 (0%)
 Frame = -1

Query: 433 GSKVTDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHT-PKFKPTRTINT 257
           GSKV+DHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHT PKFKPTR  N 
Sbjct: 2   GSKVSDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHTAPKFKPTRPTN- 60

Query: 256 TQRVSPPKNSTHHAAVTASSNHNADKGDSDNCPVGSDDWWFVGSGEVAGLSTCKGRTVKC 77
            + VSPPK++     V A+SN++  +  SD+     DDWW V   E+  LSTCKGRT+  
Sbjct: 61  PRPVSPPKSTPPTPTVNANSNYSVGERHSDD---NRDDWWLVCCSEMTCLSTCKGRTISS 117

Query: 76  GDAVSFKFPTKTLSASPSPAGKGFG 2
           G+ V FKFP K LSASPSP GKGFG
Sbjct: 118 GETVVFKFPAKKLSASPSP-GKGFG 141


>ref|XP_002527439.1| DNA repair helicase rad5,16, putative [Ricinus communis]
           gi|223533174|gb|EEF34931.1| DNA repair helicase rad5,16,
           putative [Ricinus communis]
          Length = 1028

 Score =  135 bits (340), Expect = 3e-30
 Identities = 75/154 (48%), Positives = 95/154 (61%), Gaps = 10/154 (6%)
 Frame = -1

Query: 433 GSKVTDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDT--HTPKFKPTRTIN 260
           G+K+TD  L+TVRSIVG EF+DMDIIRALH++KND +AAINIIFDT     K KP     
Sbjct: 2   GNKMTDELLTTVRSIVGPEFSDMDIIRALHLSKNDPSAAINIIFDTPNFNSKLKPQTPYK 61

Query: 259 TTQRVSPPKNSTHHAAVTASSN-------HNADKGDSDNCPVGSDDWWFVGSGEVAGLST 101
           T    +P  N T    + +  N       HN+D  + +       +WW+ GSG+VAGLST
Sbjct: 62  TPILENPNSNPTKEPKLVSKENENRNISVHNSDNIEDNCINENGSEWWYAGSGDVAGLST 121

Query: 100 CKGRTVKCGDAVSFKFPTKTLSASPSPA-GKGFG 2
            KGR +K GD V F FP K+ + S SP+ GK FG
Sbjct: 122 SKGRKLKAGDGVIFTFPLKSSNTSNSPSQGKAFG 155


>ref|XP_002270098.1| PREDICTED: putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 2-like isoform 2 [Vitis vinifera]
          Length = 1016

 Score =  125 bits (313), Expect = 5e-27
 Identities = 74/144 (51%), Positives = 89/144 (61%), Gaps = 6/144 (4%)
 Frame = -1

Query: 433 GSKVTDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHTPKFKPTRTINTT 254
           G KVTD  LSTVRS++G  ++DMDIIRALHMA NDVTAAINIIFDT     K  +   T 
Sbjct: 2   GKKVTDELLSTVRSVIGLNYSDMDIIRALHMANNDVTAAINIIFDTPNFGTKMGKNTETF 61

Query: 253 QRVSPPKNSTHHAAVTASSNHNADKGD----SDNC--PVGSDDWWFVGSGEVAGLSTCKG 92
           +R     +S+  A V + S  N D+      S  C   +GS +WWF+   E+AGLSTCKG
Sbjct: 62  RR----NSSSVSAIVVSDSYRNEDETKNFEASSRCSGSIGS-EWWFLNCSELAGLSTCKG 116

Query: 91  RTVKCGDAVSFKFPTKTLSASPSP 20
           R +K GD V F FP K    SPSP
Sbjct: 117 RRMKSGDEVFFTFPLKKSPNSPSP 140


>gb|AAS79594.1| putative DNA repair protein [Ipomoea trifida]
           gi|117166029|dbj|BAF36331.1| hypothetical protein
           [Ipomoea trifida]
          Length = 1040

 Score =  122 bits (305), Expect = 4e-26
 Identities = 74/171 (43%), Positives = 99/171 (57%), Gaps = 27/171 (15%)
 Frame = -1

Query: 433 GSKVTDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHTPKFKP------- 275
           G+KV +  +STVRSIVG E+T+MDIIRALHMA ND TAAINIIFD  TP FK        
Sbjct: 2   GNKVPEELVSTVRSIVGDEYTEMDIIRALHMANNDATAAINIIFD--TPGFKKLEFRKTP 59

Query: 274 ----------TRTINTTQRVSPPKNSTHHAAVTASS----------NHNADKGDSDNCPV 155
                     T+++ +T R S  ++     +  + +          ++N  + D+D C +
Sbjct: 60  EVPNLNSSSGTQSLGSTTRRSSSEDKKCERSTNSDNGSQQKTENRESNNGCRSDADGCEM 119

Query: 154 GSDDWWFVGSGEVAGLSTCKGRTVKCGDAVSFKFPTKTLSASPSPAGKGFG 2
            S +WWFVG+ EV+GLSTCKGR++K GD V F FP +    SPS    G G
Sbjct: 120 ES-EWWFVGTSEVSGLSTCKGRSLKPGDEVYFTFPAEKKLNSPSLGKFGRG 169


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