BLASTX nr result

ID: Glycyrrhiza23_contig00013920 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00013920
         (817 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003554547.1| PREDICTED: DNA mismatch repair protein Msh6-...    77   6e-12
ref|XP_003625965.1| DNA mismatch repair protein Msh6-1 [Medicago...    72   1e-10
gb|AAT67045.1| DNA mismatch repair protein [Petunia x hybrida]         67   5e-09
ref|XP_002515294.1| ATP binding protein, putative [Ricinus commu...    65   2e-08
emb|CBI36942.3| unnamed protein product [Vitis vinifera]               65   2e-08

>ref|XP_003554547.1| PREDICTED: DNA mismatch repair protein Msh6-1-like [Glycine max]
          Length = 1269

 Score = 76.6 bits (187), Expect = 6e-12
 Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
 Frame = +3

Query: 552 LFGQEVIGKRIRVYWPLDDAWYEGSVQSFDNVTSKHLVRYXXXXXXXXXXXXXXVEWPHD 731
           L+ QE+IG+RI+VYWPLD AWYEGSV+SFD++TSKH+VRY              +EW  +
Sbjct: 84  LYFQELIGRRIKVYWPLDKAWYEGSVKSFDSLTSKHVVRYDDGEEESLDLSKEKIEWLQE 143

Query: 732 -----XXXXXXXXXXXXXMVIEDD----EAKESHKDE 815
                             M+I+DD    E +ESHK +
Sbjct: 144 SSSKKLKRLRRGVPAVRKMMIDDDDEEVEEEESHKKD 180


>ref|XP_003625965.1| DNA mismatch repair protein Msh6-1 [Medicago truncatula]
           gi|355500980|gb|AES82183.1| DNA mismatch repair protein
           Msh6-1 [Medicago truncatula]
          Length = 1312

 Score = 72.0 bits (175), Expect = 1e-10
 Identities = 38/87 (43%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
 Frame = +3

Query: 570 IGKRIRVYWPLDDAWYEGSVQSFDNVTSKHLVRYXXXXXXXXXXXXXXVEWPHD-----X 734
           IGKRIRVYWPLD+AWYEG+V+SFD VTSKH +RY              +EW  D      
Sbjct: 91  IGKRIRVYWPLDEAWYEGTVKSFDTVTSKHRIRYDDDEEESIDLSKEKIEWIQDSSSKKL 150

Query: 735 XXXXXXXXXXXXMVIEDDEAKESHKDE 815
                       MVIE +E  +  K E
Sbjct: 151 KRLRRGSSPIRKMVIEVEECPKEEKQE 177


>gb|AAT67045.1| DNA mismatch repair protein [Petunia x hybrida]
          Length = 1303

 Score = 67.0 bits (162), Expect = 5e-09
 Identities = 33/87 (37%), Positives = 45/87 (51%)
 Frame = +3

Query: 555 FGQEVIGKRIRVYWPLDDAWYEGSVQSFDNVTSKHLVRYXXXXXXXXXXXXXXVEWPHDX 734
           +GQEV+ KR++VYWPLD  WYEG V+SFD+ + KHLV Y              +EW  + 
Sbjct: 83  YGQEVVDKRVKVYWPLDKNWYEGFVKSFDSASGKHLVEYDDGEEEMIELAEEKIEWVEE- 141

Query: 735 XXXXXXXXXXXXMVIEDDEAKESHKDE 815
                        V+E+ E +E  K E
Sbjct: 142 APARKFRRLRRFSVVEEAEKEEEEKLE 168


>ref|XP_002515294.1| ATP binding protein, putative [Ricinus communis]
           gi|223545774|gb|EEF47278.1| ATP binding protein,
           putative [Ricinus communis]
          Length = 1306

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
 Frame = +3

Query: 555 FGQEVIGKRIRVYWPLDDAWYEGSVQSFDNVTSKHLVRYXXXXXXXXXXXXXXVEWPHD- 731
           FG+EV+ KR++VYWPLD  WYEG V+S+D  + KHLV+Y              +EW  + 
Sbjct: 103 FGKEVVEKRVKVYWPLDKTWYEGCVKSYDEDSGKHLVQYDDFEEEVLDLGNEKIEWVEES 162

Query: 732 ---XXXXXXXXXXXXXMVIEDDEAKE 800
                            VIED+E K+
Sbjct: 163 VTKFKRLRRGSLAFKNTVIEDEEMKD 188


>emb|CBI36942.3| unnamed protein product [Vitis vinifera]
          Length = 1237

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 25/59 (42%), Positives = 37/59 (62%)
 Frame = +3

Query: 555 FGQEVIGKRIRVYWPLDDAWYEGSVQSFDNVTSKHLVRYXXXXXXXXXXXXXXVEWPHD 731
           +G+EV+ +R++VYWPLD +WY G V+SFD +T +HLV+Y              +EW  D
Sbjct: 62  YGEEVVNRRVKVYWPLDKSWYVGCVKSFDELTGEHLVQYDDADEETLDLGKEKIEWVED 120


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