BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00013473
         (941 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 ...   204   3e-50
gb|AFK45778.1| unknown [Medicago truncatula]                          197   4e-48
ref|XP_003534990.1| PREDICTED: DNA-directed RNA polymerase II su...   173   5e-41
ref|XP_002525033.1| conserved hypothetical protein [Ricinus comm...   162   1e-37
ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II su...   157   3e-36

>ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
           gi|124360902|gb|ABN08874.1| RNA polymerase Rpb4
           [Medicago truncatula] gi|355483391|gb|AES64594.1|
           DNA-directed RNA polymerase II subunit rpb4 [Medicago
           truncatula]
          Length = 223

 Score =  204 bits (518), Expect = 3e-50
 Identities = 115/206 (55%), Positives = 129/206 (62%), Gaps = 8/206 (3%)
 Frame = -3

Query: 939 PKQVLAMSEXXXXXXXXXXXXXXXXXKDDSATKAAKGRKVQFSXXXXXXXXXXXXXXXXK 760
           PKQVL MS+                 KDDSATK+AK RKVQFS                 
Sbjct: 16  PKQVLTMSDKGGKGGSLLSKGGGLKGKDDSATKSAKARKVQFSEGLFESRSNGPTSGGKG 75

Query: 759 --------SPASKDPQQSEPRIDQERPQNIKCLMDCEAADILQGIHEQMVMLSRDPAIKM 604
                   S A+KDP Q E R+DQE P+N KCLMDCEAA +LQGI +QMV LSRDP+IKM
Sbjct: 76  DKVANGGKSSAAKDPHQFEHRVDQELPENFKCLMDCEAAVMLQGIQDQMVALSRDPSIKM 135

Query: 603 PVSFDKGLQYAKSSRKYSNTNPESIRRILEPLLDHGLTDSEICVIANVCPETADEVFALL 424
           P SFDKGL YAKSS     +NPES+R  LEPL++H LT+SEICVIANVCPETADEVFALL
Sbjct: 136 PASFDKGLYYAKSSSSSKYSNPESVRHTLEPLMNHDLTESEICVIANVCPETADEVFALL 195

Query: 423 PSLKGRRSINXXXXXXXXXXLVKHKQ 346
           PSLK +R IN          L K KQ
Sbjct: 196 PSLKSKRGINSQPVEEALSELAKFKQ 221


>gb|AFK45778.1| unknown [Medicago truncatula]
          Length = 201

 Score =  197 bits (500), Expect = 4e-48
 Identities = 107/179 (59%), Positives = 120/179 (67%), Gaps = 8/179 (4%)
 Frame = -3

Query: 858 DDSATKAAKGRKVQFSXXXXXXXXXXXXXXXXK--------SPASKDPQQSEPRIDQERP 703
           DDSATK+AK RKVQFS                         S A+KDP Q E R+DQE P
Sbjct: 21  DDSATKSAKARKVQFSEGLFESRSNGPTSGGKGDKVANGGKSSAAKDPHQFEHRVDQELP 80

Query: 702 QNIKCLMDCEAADILQGIHEQMVMLSRDPAIKMPVSFDKGLQYAKSSRKYSNTNPESIRR 523
           +N KCLMDCEAA +LQGI +QMV LSRDP+IKMP SFDKGL YAKSS     +NPES+R 
Sbjct: 81  ENFKCLMDCEAAVMLQGIQDQMVALSRDPSIKMPASFDKGLYYAKSSSSSKYSNPESVRH 140

Query: 522 ILEPLLDHGLTDSEICVIANVCPETADEVFALLPSLKGRRSINXXXXXXXXXXLVKHKQ 346
            LEPL++H LT+SEICVIANVCPETADEVFALLPSLK +R IN          L K KQ
Sbjct: 141 TLEPLMNHDLTESEICVIANVCPETADEVFALLPSLKSKRGINSQPVEEALSELAKFKQ 199


>ref|XP_003534990.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
           [Glycine max]
          Length = 211

 Score =  173 bits (439), Expect = 5e-41
 Identities = 100/191 (52%), Positives = 118/191 (61%), Gaps = 18/191 (9%)
 Frame = -3

Query: 858 DDSATKAAKGRKVQFSXXXXXXXXXXXXXXXXK------------------SPASKDPQQ 733
           DD ATK+AKGR+VQFS                                   +  SKD   
Sbjct: 23  DDIATKSAKGRRVQFSTDGPLFESGVSSNSATSLKSGGKGGMGDNVAKGGKNSQSKDSHP 82

Query: 732 SEPRIDQERPQNIKCLMDCEAADILQGIHEQMVMLSRDPAIKMPVSFDKGLQYAKSSRKY 553
           S+ R+DQ+ P+NIKCLMDCEA DILQGI E+MVMLSRD  +KMP+SFDKGLQYAKS+ KY
Sbjct: 83  SDYRVDQKLPENIKCLMDCEAVDILQGIQERMVMLSRDSTVKMPISFDKGLQYAKSNSKY 142

Query: 552 SNTNPESIRRILEPLLDHGLTDSEICVIANVCPETADEVFALLPSLKGRRSINXXXXXXX 373
            +   +SIR IL+ L   G+TDSEICVI NVCPET DEVFALLPSLK RR+I+       
Sbjct: 143 LDL--QSIRHILDRLAKCGVTDSEICVIGNVCPETIDEVFALLPSLKDRRNIDSQVLKDS 200

Query: 372 XXXLVKHKQPM 340
              L K +Q M
Sbjct: 201 LSELAKFRQTM 211


>ref|XP_002525033.1| conserved hypothetical protein [Ricinus communis]
           gi|223535695|gb|EEF37360.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 203

 Score =  162 bits (410), Expect = 1e-37
 Identities = 80/156 (51%), Positives = 111/156 (71%), Gaps = 2/156 (1%)
 Frame = -3

Query: 858 DDSATKAAKGRKVQFSXXXXXXXXXXXXXXXXKSPAS--KDPQQSEPRIDQERPQNIKCL 685
           DD++ K+ +G+KVQF+                    S  K+PQ  E +I+Q+ P+N KCL
Sbjct: 31  DDTSAKSKRGKKVQFNSQGNMSKGGKGDKVSNGVKISSTKEPQPLELKIEQDLPKNAKCL 90

Query: 684 MDCEAADILQGIHEQMVMLSRDPAIKMPVSFDKGLQYAKSSRKYSNTNPESIRRILEPLL 505
           MDCEAA +LQGI EQMV+LSRDP IK+PVSFD+ LQ+A++  ++  TNP+S+RRILE L 
Sbjct: 91  MDCEAAQVLQGIQEQMVLLSRDPTIKLPVSFDRALQHARTGARF--TNPQSVRRILEGLK 148

Query: 504 DHGLTDSEICVIANVCPETADEVFALLPSLKGRRSI 397
            HG+++ EIC IANVCP+  DEVFAL+PSLK ++++
Sbjct: 149 KHGVSEGEICTIANVCPDGVDEVFALVPSLKSKKNV 184


>ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
           [Cucumis sativus]
          Length = 220

 Score =  157 bits (398), Expect = 3e-36
 Identities = 88/170 (51%), Positives = 107/170 (62%), Gaps = 17/170 (10%)
 Frame = -3

Query: 858 DDSATKAAKGRKVQFSXXXXXXXXXXXXXXXXK---------------SPASKDPQQSEP 724
           DDS +K  KGRKVQF                                 +  +K+PQ  E 
Sbjct: 34  DDSLSKLKKGRKVQFDAQGSVDATNTFSMKYSGKNGDLGKGGKGANTKASIAKEPQALEL 93

Query: 723 RIDQERPQNIKC--LMDCEAADILQGIHEQMVMLSRDPAIKMPVSFDKGLQYAKSSRKYS 550
           +I+QE P+N+KC  LMDCEAA +LQGI +QMV LS DP IK+P SFD+GLQYAK +  Y 
Sbjct: 94  KIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHY- 152

Query: 549 NTNPESIRRILEPLLDHGLTDSEICVIANVCPETADEVFALLPSLKGRRS 400
             N ES+R +LE L  +G+TDSEICVIANVCP+T DEVFALLPSLK +RS
Sbjct: 153 -VNAESVRPVLETLKKYGVTDSEICVIANVCPDTTDEVFALLPSLKRKRS 201