BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00012548
         (1086 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003599439.1| RNA polymerase sigma factor [Medicago trunca...   480   e-133
ref|XP_003599441.1| RNA polymerase sigma factor [Medicago trunca...   410   e-112
emb|CBI24961.3| unnamed protein product [Vitis vinifera]              365   1e-98
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-...   365   1e-98
ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana] gi|752165...   328   1e-87

>ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula]
            gi|355488487|gb|AES69690.1| RNA polymerase sigma factor
            [Medicago truncatula]
          Length = 403

 Score =  480 bits (1236), Expect = e-133
 Identities = 250/323 (77%), Positives = 282/323 (87%)
 Frame = +1

Query: 43   DLGCLEEEENQIQNNCSRLKLLVGSATAGFLSSTEEAELCLGLKEGARIEVSKLRITELE 222
            +LGC+ EEEN IQNN  R K++VGS T+GFLSST+EAELCL LKEGA+IEV+K R+TE E
Sbjct: 83   NLGCMVEEEN-IQNNFLRQKVVVGSVTSGFLSSTDEAELCLCLKEGAKIEVAKQRMTEQE 141

Query: 223  GNPTISRKFAHGNTSLDKVLCTTKESRERLIREYRGLVTSIAAGYKGKGLSLHELIQEGT 402
            GN  ISR F   NTS+DKVL  T++S+ERL R+YRGLV SIAA Y+GKGLS+ +LIQEGT
Sbjct: 142  GNSAISR-FTLENTSVDKVLINTRKSKERLARDYRGLVASIAAHYQGKGLSIQDLIQEGT 200

Query: 403  IGLLQGVEKFDPNRGCKLSTYVYWWIKQAIIKAVAMKCRLVRLPGNKCQMVAKVAKTNNV 582
            IGLL G EKFDPNRGCKLSTYVYWWIKQ IIKA+A K RL+RLPG K  MVAK+A+ NNV
Sbjct: 201  IGLLHGAEKFDPNRGCKLSTYVYWWIKQGIIKALAKKSRLIRLPGEKYGMVAKIAEANNV 260

Query: 583  MRRRLRRKPTYNETAEVLNVNVSTVKLVSERSRPPISLDKAVTDRGHLTLQEIIPGPVEM 762
            +RRRLRRKPTYNE AEVLNVNVSTVKLVSERSR PISLD+++TD+ +L L+EIIPGPVEM
Sbjct: 261  LRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLILKEIIPGPVEM 320

Query: 763  IPEKMVERQLMKQGVVKLLNMLTKREAEIVMLRFGLNGETPRSFEEIGRLLKLSRERVRQ 942
            IPEKMVERQLMKQGVVKLLN L KRE EIV L FGLNGETP SFEEIG+LLKLSRER+RQ
Sbjct: 321  IPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQ 380

Query: 943  IHGIALSKLQQTSLVDSLKFYVV 1011
            IHGIALSKL+Q +LVDSLKFYVV
Sbjct: 381  IHGIALSKLEQNTLVDSLKFYVV 403


>ref|XP_003599441.1| RNA polymerase sigma factor [Medicago truncatula]
            gi|355488489|gb|AES69692.1| RNA polymerase sigma factor
            [Medicago truncatula]
          Length = 267

 Score =  410 bits (1053), Expect = e-112
 Identities = 211/268 (78%), Positives = 235/268 (87%)
 Frame = +1

Query: 208  ITELEGNPTISRKFAHGNTSLDKVLCTTKESRERLIREYRGLVTSIAAGYKGKGLSLHEL 387
            +TE EGN  ISR F   NTS+DKVL  T++S+ERL R+YRGLV SIAA Y+GKGLS+ +L
Sbjct: 1    MTEQEGNSAISR-FTLENTSVDKVLINTRKSKERLARDYRGLVASIAAHYQGKGLSIQDL 59

Query: 388  IQEGTIGLLQGVEKFDPNRGCKLSTYVYWWIKQAIIKAVAMKCRLVRLPGNKCQMVAKVA 567
            IQEGTIGLL G EKFDPNRGCKLSTYVYWWIKQ IIKA+A K RL+RLPG K  MVAK+A
Sbjct: 60   IQEGTIGLLHGAEKFDPNRGCKLSTYVYWWIKQGIIKALAKKSRLIRLPGEKYGMVAKIA 119

Query: 568  KTNNVMRRRLRRKPTYNETAEVLNVNVSTVKLVSERSRPPISLDKAVTDRGHLTLQEIIP 747
            + NNV+RRRLRRKPTYNE AEVLNVNVSTVKLVSERSR PISLD+++TD+ +L L+EIIP
Sbjct: 120  EANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITDQSNLILKEIIP 179

Query: 748  GPVEMIPEKMVERQLMKQGVVKLLNMLTKREAEIVMLRFGLNGETPRSFEEIGRLLKLSR 927
            GPVEMIPEKMVERQLMKQGVVKLLN L KRE EIV L FGLNGETP SFEEIG+LLKLSR
Sbjct: 180  GPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSR 239

Query: 928  ERVRQIHGIALSKLQQTSLVDSLKFYVV 1011
            ER+RQIHGIALSKL+Q +LVDSLKFYVV
Sbjct: 240  ERIRQIHGIALSKLEQNTLVDSLKFYVV 267


>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
          Length = 319

 Score =  365 bits (936), Expect = 1e-98
 Identities = 189/304 (62%), Positives = 240/304 (78%), Gaps = 4/304 (1%)
 Frame = +1

Query: 112  GSATAGFLSSTEEAELCLGLKEGARIEVSKLRITELEGNPTISRKFAHG----NTSLDKV 279
            G+A +  L+  EEAE CL LKE A +E ++ RI E   +   S ++A       +SLDK+
Sbjct: 16   GAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKM 75

Query: 280  LCTTKESRERLIREYRGLVTSIAAGYKGKGLSLHELIQEGTIGLLQGVEKFDPNRGCKLS 459
            LC  +ESRER+ + YR LV SIAA Y+GKGLSL +LIQEG+IGLL+G E+FDP+RG KLS
Sbjct: 76   LCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLS 135

Query: 460  TYVYWWIKQAIIKAVAMKCRLVRLPGNKCQMVAKVAKTNNVMRRRLRRKPTYNETAEVLN 639
            TYVYWWI+QAI++A+A K R++RLPG+ C+MVAK+A+   V+ RRLRR PTY+E AE ++
Sbjct: 136  TYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFID 195

Query: 640  VNVSTVKLVSERSRPPISLDKAVTDRGHLTLQEIIPGPVEMIPEKMVERQLMKQGVVKLL 819
            VNVSTV+LVSERSR PIS+D+AVT +G +TLQEIIPGP E  P+KMV+RQLMKQ V + L
Sbjct: 196  VNVSTVRLVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERAL 255

Query: 820  NMLTKREAEIVMLRFGLNGETPRSFEEIGRLLKLSRERVRQIHGIALSKLQQTSLVDSLK 999
            N L +REA I+ L FG+NGETP SFEEIGRL+KLSRERVRQI+ IALSKL+QTS+VD LK
Sbjct: 256  NTLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLK 315

Query: 1000 FYVV 1011
             Y++
Sbjct: 316  LYMM 319


>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
          Length = 426

 Score =  365 bits (936), Expect = 1e-98
 Identities = 189/304 (62%), Positives = 240/304 (78%), Gaps = 4/304 (1%)
 Frame = +1

Query: 112  GSATAGFLSSTEEAELCLGLKEGARIEVSKLRITELEGNPTISRKFAHG----NTSLDKV 279
            G+A +  L+  EEAE CL LKE A +E ++ RI E   +   S ++A       +SLDK+
Sbjct: 123  GAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKM 182

Query: 280  LCTTKESRERLIREYRGLVTSIAAGYKGKGLSLHELIQEGTIGLLQGVEKFDPNRGCKLS 459
            LC  +ESRER+ + YR LV SIAA Y+GKGLSL +LIQEG+IGLL+G E+FDP+RG KLS
Sbjct: 183  LCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLS 242

Query: 460  TYVYWWIKQAIIKAVAMKCRLVRLPGNKCQMVAKVAKTNNVMRRRLRRKPTYNETAEVLN 639
            TYVYWWI+QAI++A+A K R++RLPG+ C+MVAK+A+   V+ RRLRR PTY+E AE ++
Sbjct: 243  TYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFID 302

Query: 640  VNVSTVKLVSERSRPPISLDKAVTDRGHLTLQEIIPGPVEMIPEKMVERQLMKQGVVKLL 819
            VNVSTV+LVSERSR PIS+D+AVT +G +TLQEIIPGP E  P+KMV+RQLMKQ V + L
Sbjct: 303  VNVSTVRLVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERAL 362

Query: 820  NMLTKREAEIVMLRFGLNGETPRSFEEIGRLLKLSRERVRQIHGIALSKLQQTSLVDSLK 999
            N L +REA I+ L FG+NGETP SFEEIGRL+KLSRERVRQI+ IALSKL+QTS+VD LK
Sbjct: 363  NTLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLK 422

Query: 1000 FYVV 1011
             Y++
Sbjct: 423  LYMM 426


>ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
            gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA
            polymerase sigma factor sigD, chloroplastic; Short=Sigma
            factor D; Short=Sigma-D; AltName: Full=RNA polymerase
            sigma factor sig4; Short=Atsig4; Short=Sigma factor 4;
            Flags: Precursor gi|3983260|gb|AAC97954.1| sigma-like
            factor [Arabidopsis thaliana] gi|4972296|dbj|BAA78110.1|
            RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
            gi|9758039|dbj|BAB08700.1| sigma-like factor [Arabidopsis
            thaliana] gi|332004550|gb|AED91933.1| sigma factor 4
            [Arabidopsis thaliana]
          Length = 419

 Score =  328 bits (841), Expect = 1e-87
 Identities = 176/322 (54%), Positives = 234/322 (72%), Gaps = 6/322 (1%)
 Frame = +1

Query: 58   EEEENQ-IQNNCSRLKL-LVGSATAGFLSSTEEAELCLGLKEGARIEVSKLRITELEGNP 231
            EEEEN  ++     + + +VG++ +GFLS  EE +LCL LKEGA++E      T +E N 
Sbjct: 96   EEEENAGVEAEAETISVPVVGASRSGFLSRLEEVQLCLYLKEGAKLENLG---TSVEENE 152

Query: 232  TISRKFAHGN----TSLDKVLCTTKESRERLIREYRGLVTSIAAGYKGKGLSLHELIQEG 399
             +S   A G      S +++LC  KE+RE++ R YR LV SIA GY+GKGL+L +LIQEG
Sbjct: 153  MVSVLLASGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEG 212

Query: 400  TIGLLQGVEKFDPNRGCKLSTYVYWWIKQAIIKAVAMKCRLVRLPGNKCQMVAKVAKTNN 579
            +IGLL+G E+FDP+RG KLSTYVYWWIKQAI++A+A K RLV+LPG+  ++ AKVA+ +N
Sbjct: 213  SIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASN 272

Query: 580  VMRRRLRRKPTYNETAEVLNVNVSTVKLVSERSRPPISLDKAVTDRGHLTLQEIIPGPVE 759
            V+ R+LRR+P+  E AE LN+NVS V+L  ERSR P+SLD+  +  G +TLQEI+ GP E
Sbjct: 273  VLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDE 332

Query: 760  MIPEKMVERQLMKQGVVKLLNMLTKREAEIVMLRFGLNGETPRSFEEIGRLLKLSRERVR 939
              PE+MV+R+ MK  + +LL  LT RE+ ++ L FGLNGETP SFEEIG+ LKLSRERVR
Sbjct: 333  TRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVR 392

Query: 940  QIHGIALSKLQQTSLVDSLKFY 1005
            QI+GIAL KL+    V+ LK Y
Sbjct: 393  QINGIALKKLRNVHNVNDLKIY 414