BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00011578
         (1227 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003546956.1| PREDICTED: uncharacterized protein LOC100788...   546   e-153
ref|XP_003597674.1| MMS19 nucleotide excision repair protein-lik...   542   e-152
ref|XP_003616940.1| MMS19 nucleotide excision repair protein-lik...   519   e-145
emb|CBI36057.3| unnamed protein product [Vitis vinifera]              435   e-119
ref|XP_002515963.1| DNA repair/transcription protein met18/mms19...   410   e-112

>ref|XP_003546956.1| PREDICTED: uncharacterized protein LOC100788537 [Glycine max]
          Length = 1135

 Score =  546 bits (1408), Expect = e-153
 Identities = 280/358 (78%), Positives = 306/358 (85%), Gaps = 12/358 (3%)
 Frame = -2

Query: 1226 HIPNIRALLHLFIITLLRGVVPVAQALGSMINKLISKSNGTDNSNDLTLEEALDIIFNTK 1047
            +IPNIR L+HLFIITLLRGVVPVAQALGS++NKL+S S+  +NS+DLTLEEALD IFNTK
Sbjct: 779  YIPNIRVLVHLFIITLLRGVVPVAQALGSILNKLVSTSSTAENSSDLTLEEALDAIFNTK 838

Query: 1046 IWFSGTDMLQRCNGTSNGNEMVLTDLCLGIPNDRLIQTNAICGLSWIGKGLLLRGHEKIK 867
            I FS TDMLQRCNGTSNGNEMV TD+CLGI NDR++Q NAICGLSW+GKGLLLRGHEKIK
Sbjct: 839  ISFSSTDMLQRCNGTSNGNEMVFTDICLGIANDRMLQINAICGLSWMGKGLLLRGHEKIK 898

Query: 866  DVTMIFMECLISGTKS------------EEQKWDPLVGTCAADAFHVLMSDSEVCLNRKF 723
            D+TMIFMECLISGTKS            EEQ  D LV  CA DAFHVLMSDSEVCLNRKF
Sbjct: 899  DITMIFMECLISGTKSASPLIKDSLENTEEQIQDLLVIKCATDAFHVLMSDSEVCLNRKF 958

Query: 722  HAIIRPLYKQRFFFSMMPIFQQLITKSHSSVSRSFLYRAFAHIMSETPLIVILSEAKKLI 543
            HA IRPLYKQRFF S+MPI QQ+ITKSHSS+SRSFLYRAFAHIMS+TP++ I+SEAKKLI
Sbjct: 959  HATIRPLYKQRFFSSVMPILQQIITKSHSSLSRSFLYRAFAHIMSDTPMVAIVSEAKKLI 1018

Query: 542  PVFLDCLSMLSEDIQDKDXXXXXXXXXXXXLTEKNGQEAVIENAHIIINCLIKLVDYPHK 363
            PV LDCLSML+E IQDKD            L EKNGQEAV+ENAHIIINCLIKLV YPHK
Sbjct: 1019 PVLLDCLSMLTE-IQDKDMLYGLLLVLSGILMEKNGQEAVVENAHIIINCLIKLVGYPHK 1077

Query: 362  TLVRETAIECLVALSALPHVRIYPMRTQVLQAISKCLDDTKRAVRHEAVKCRQAWASI 189
             LVRETAI+CLVALS LPH RIYPMRTQVL+AISKCLDD+KRAVRHEAVKCRQ WAS+
Sbjct: 1078 MLVRETAIQCLVALSELPHARIYPMRTQVLRAISKCLDDSKRAVRHEAVKCRQTWASM 1135


>ref|XP_003597674.1| MMS19 nucleotide excision repair protein-like protein [Medicago
            truncatula] gi|355486722|gb|AES67925.1| MMS19 nucleotide
            excision repair protein-like protein [Medicago
            truncatula]
          Length = 1140

 Score =  542 bits (1396), Expect = e-152
 Identities = 281/367 (76%), Positives = 311/367 (84%), Gaps = 14/367 (3%)
 Frame = -2

Query: 1226 HIPNIRALLHLFIITLLRGVVPVAQALGSMINKLISKSNGTDNSNDLTLEEALDIIFNTK 1047
            HIPNIR LLHLFIITLL+GVVPVAQALGSM+NKL SKSNG + S++LTLEEALDIIFNTK
Sbjct: 774  HIPNIRGLLHLFIITLLKGVVPVAQALGSMLNKLTSKSNGAEKSDELTLEEALDIIFNTK 833

Query: 1046 IWFSGTDMLQRCNGTSNGNEMVLTDLCLGIPNDRLIQTNAICGLSWIGKGLLLRGHEKIK 867
            IWFS  +MLQ  NG+SNG+++VLTDLCLGI NDRL+Q+NAICGLSWIGKGLLLRGHEKIK
Sbjct: 834  IWFSSNNMLQIYNGSSNGSDIVLTDLCLGITNDRLLQSNAICGLSWIGKGLLLRGHEKIK 893

Query: 866  DVTMIFMECLISGTK-------------SEEQKWDPLVGTCAADAFHVLMSDSEVCLNRK 726
            D+TMIF ECLIS  +             +E+QK DPL   CA +AFHVLMSD+E CLNRK
Sbjct: 894  DITMIFTECLISDRRKTSVPLVEGSLENTEKQKCDPLARKCATEAFHVLMSDAEDCLNRK 953

Query: 725  FHAIIRPLYKQRFFFSMMPIFQQLITKSHSSVSRSFLYRAFAHIMSETPLIVILSEAKKL 546
            FHA +RPLYKQRFF SMMPIF QLI++S S +SRS L RAFAH+MS+TPLIVIL+EAKKL
Sbjct: 954  FHATVRPLYKQRFFSSMMPIFLQLISRSDSLLSRSLLLRAFAHVMSDTPLIVILNEAKKL 1013

Query: 545  IPVFLDCLSMLSEDIQDKDXXXXXXXXXXXXLTEKNGQEAVIENAHIIINCLIKLVDYPH 366
            IPV LDCL ML+EDIQDKD            LTEKNGQEAVIENAHIIIN LIKLVDYPH
Sbjct: 1014 IPVLLDCLFMLTEDIQDKDILYGLLLVLSGMLTEKNGQEAVIENAHIIINGLIKLVDYPH 1073

Query: 365  KTLVRETAIECLVALSALPHVRIYPMRTQVLQAISKCLDDTKRAVRHEAVKCRQAWASIA 186
            KTLVRETAI+CLVALS LPHVRIYP+RTQVLQAI KCLDDTKR+VR+EAVKCRQAWASIA
Sbjct: 1074 KTLVRETAIQCLVALSELPHVRIYPLRTQVLQAIFKCLDDTKRSVRNEAVKCRQAWASIA 1133

Query: 185  -SRSLRF 168
             SRSLRF
Sbjct: 1134 SSRSLRF 1140


>ref|XP_003616940.1| MMS19 nucleotide excision repair protein-like protein [Medicago
            truncatula] gi|355518275|gb|AES99898.1| MMS19 nucleotide
            excision repair protein-like protein [Medicago
            truncatula]
          Length = 1139

 Score =  519 bits (1336), Expect = e-145
 Identities = 271/366 (74%), Positives = 302/366 (82%), Gaps = 13/366 (3%)
 Frame = -2

Query: 1226 HIPNIRALLHLFIITLLRGVVPVAQALGSMINKLISKSNGTDNSNDLTLEEALDIIFNTK 1047
            H+PNIR +LHLFIITLL+GVVPVAQALGSM+NKLISKSNG + S++LTLEEAL IIFNTK
Sbjct: 774  HVPNIRGILHLFIITLLKGVVPVAQALGSMVNKLISKSNGAEKSDELTLEEALHIIFNTK 833

Query: 1046 IWFSGTDMLQRCNGTSNGNEMVLTDLCLGIPNDRLIQTNAICGLSWIGKGLLLRGHEKIK 867
            I FS  +MLQ C+G+ N NE+VLTD+CLG+ NDRL+QTNA+CGLSWIGKGLLLRGHEKIK
Sbjct: 834  ICFSSDNMLQICDGSINRNEIVLTDVCLGMTNDRLLQTNAVCGLSWIGKGLLLRGHEKIK 893

Query: 866  DVTMIFMECLISGTKS------------EEQKWDPLVGTCAADAFHVLMSDSEVCLNRKF 723
            D+T I  ECLIS   S            EE K D L   CAADAFHVLMSD+E CLNRKF
Sbjct: 894  DITKILTECLISDRNSSLPLIEGLDENNEEHKGDHLARKCAADAFHVLMSDAEDCLNRKF 953

Query: 722  HAIIRPLYKQRFFFSMMPIFQQLITKSHSSVSRSFLYRAFAHIMSETPLIVILSEAKKLI 543
            HA +RPLYKQRFF SMMPIF QLI++S SS SR  L RAFA +MS TPLIVIL++AK+LI
Sbjct: 954  HATMRPLYKQRFFSSMMPIFLQLISRSDSSSSRYLLLRAFARVMSVTPLIVILNDAKELI 1013

Query: 542  PVFLDCLSMLSEDIQDKDXXXXXXXXXXXXLTEKNGQEAVIENAHIIINCLIKLVDYPHK 363
             V LDCLSML+EDIQDKD            LTEKNGQEAVIENAHIIINCLIKLVDY HK
Sbjct: 1014 SVLLDCLSMLTEDIQDKDILYGLLLVLSGMLTEKNGQEAVIENAHIIINCLIKLVDYSHK 1073

Query: 362  TLVRETAIECLVALSALPHVRIYPMRTQVLQAISKCLDDTKRAVRHEAVKCRQAWASIA- 186
            TLVRE+ I+CLVALS LPHVRIYP+RTQVL+AISKCLDDTKR+VR+EAVKCRQAWASIA 
Sbjct: 1074 TLVRESCIQCLVALSKLPHVRIYPLRTQVLEAISKCLDDTKRSVRNEAVKCRQAWASIAS 1133

Query: 185  SRSLRF 168
            SRSLRF
Sbjct: 1134 SRSLRF 1139


>emb|CBI36057.3| unnamed protein product [Vitis vinifera]
          Length = 1146

 Score =  435 bits (1118), Expect = e-119
 Identities = 225/354 (63%), Positives = 269/354 (75%), Gaps = 1/354 (0%)
 Frame = -2

Query: 1226 HIPNIRALLHLFIITLLRGVVPVAQALGSMINKLISKSNGTDNSNDLTLEEALDIIFNTK 1047
            HIPNIR +LHLF+  LL+G VP AQALGSM+NKL  KSNG + S+  TLE+ALDIIFNT 
Sbjct: 794  HIPNIRVVLHLFMTNLLKGHVPAAQALGSMVNKLCPKSNGVEISSTCTLEDALDIIFNTS 853

Query: 1046 IWFSGTD-MLQRCNGTSNGNEMVLTDLCLGIPNDRLIQTNAICGLSWIGKGLLLRGHEKI 870
            +W S     L+RC+G    NEM L +LCL   N +L+Q  AI GL+WIGKGLLLRGHEK+
Sbjct: 854  LWDSHNHGPLKRCSGIGVDNEMGLANLCLSASNCQLLQVCAIEGLAWIGKGLLLRGHEKV 913

Query: 869  KDVTMIFMECLISGTKSEEQKWDPLVGTCAADAFHVLMSDSEVCLNRKFHAIIRPLYKQR 690
            KD+TMIF+ CL+S   ++EQ   P V   AADAFHVLMSDSE+CLN++FHA IRPLYKQR
Sbjct: 914  KDITMIFLRCLLS-KNNQEQDVLPSVAKSAADAFHVLMSDSEICLNKRFHANIRPLYKQR 972

Query: 689  FFFSMMPIFQQLITKSHSSVSRSFLYRAFAHIMSETPLIVILSEAKKLIPVFLDCLSMLS 510
            FF S++PI    + +S  S +RS LYRA AHI+S+TPLI +LSEAKK+IP+ LD LS+LS
Sbjct: 973  FFSSVLPILVSSMAESRLSNTRSMLYRALAHIISDTPLIAVLSEAKKIIPILLDSLSILS 1032

Query: 509  EDIQDKDXXXXXXXXXXXXLTEKNGQEAVIENAHIIINCLIKLVDYPHKTLVRETAIECL 330
                DKD            L +KNGQE V+ENAH+IINCLI LV YPH  +VRETAI+CL
Sbjct: 1033 TYNLDKDILYNLLLVLSGILMDKNGQETVVENAHVIINCLIGLVGYPHMMVVRETAIQCL 1092

Query: 329  VALSALPHVRIYPMRTQVLQAISKCLDDTKRAVRHEAVKCRQAWASIASRSLRF 168
            VA+S LPH RIYPMRTQVL+++ K LDD KRAVRHEAV+CRQAWASIASRSL F
Sbjct: 1093 VAMSRLPHARIYPMRTQVLRSVQKALDDPKRAVRHEAVRCRQAWASIASRSLHF 1146


>ref|XP_002515963.1| DNA repair/transcription protein met18/mms19, putative [Ricinus
            communis] gi|223544868|gb|EEF46383.1| DNA
            repair/transcription protein met18/mms19, putative
            [Ricinus communis]
          Length = 1174

 Score =  410 bits (1054), Expect = e-112
 Identities = 217/367 (59%), Positives = 265/367 (72%), Gaps = 14/367 (3%)
 Frame = -2

Query: 1226 HIPNIRALLHLFIITLLRGVVPVAQALGSMINKLISKSNGTDNSNDLTLEEALDIIFNTK 1047
            HIPN R +LHLFI  LL+G V  A+ALGS++NKL  KSN    S D T+EEA+DIIF+  
Sbjct: 808  HIPNTRIVLHLFITALLKGHVTTAEALGSLVNKLDQKSNDACISGDCTIEEAMDIIFSIN 867

Query: 1046 IWFS-GTDMLQRCNGTSNGNEMVLTDLCLGIPNDRLIQTNAICGLSWIGKGLLLRGHEKI 870
            +  S G     R + T NG+EM L  LCL  PN   I+  AI GL+WIGKGLL+RGHEK+
Sbjct: 868  LLCSFGNGSSGRFDRTRNGDEMDLIKLCLDAPNLAWIKIPAIVGLAWIGKGLLMRGHEKV 927

Query: 869  KDVTMIFMECLISGTK-------------SEEQKWDPLVGTCAADAFHVLMSDSEVCLNR 729
            KD+TM+F+ CL+S  +             + EQ     V   A+DAF +LMSDSE+CLNR
Sbjct: 928  KDITMVFLNCLLSDGEIGASPLKHGSLENNGEQDMQQSVMKSASDAFQILMSDSELCLNR 987

Query: 728  KFHAIIRPLYKQRFFFSMMPIFQQLITKSHSSVSRSFLYRAFAHIMSETPLIVILSEAKK 549
            K+HAI+RPLYKQRFF S+MPI   LITKS SS S+S LYRAFAH++S+TPL VI ++AKK
Sbjct: 988  KYHAIVRPLYKQRFFSSIMPILYPLITKSDSSFSKSLLYRAFAHVISDTPLSVISNDAKK 1047

Query: 548  LIPVFLDCLSMLSEDIQDKDXXXXXXXXXXXXLTEKNGQEAVIENAHIIINCLIKLVDYP 369
            L+PV LD L++L +D+ DKD            LT+ NG+EAVIENAHIII CLI+LV YP
Sbjct: 1048 LVPVLLDGLTLLGKDVLDKDIMYGLLLVLSGILTDTNGKEAVIENAHIIIKCLIELVAYP 1107

Query: 368  HKTLVRETAIECLVALSALPHVRIYPMRTQVLQAISKCLDDTKRAVRHEAVKCRQAWASI 189
            H  L+RETA++CLVA+S LPH RIYP+R QVLQAISK LDD KRAVR EAV+CRQAWASI
Sbjct: 1108 HMMLIRETAVQCLVAMSELPHTRIYPVRIQVLQAISKALDDPKRAVRQEAVRCRQAWASI 1167

Query: 188  ASRSLRF 168
            ASRSL +
Sbjct: 1168 ASRSLHY 1174