BLASTX nr result
ID: Glycyrrhiza23_contig00011527
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00011527
(620 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 96 2e-23
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 80 2e-20
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 87 8e-20
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 87 8e-20
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 91 2e-19
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 96.3 bits (238), Expect(2) = 2e-23
Identities = 46/123 (37%), Positives = 71/123 (57%)
Frame = -2
Query: 619 FLWGDSDESRHLHSVSWEKICKPKAWGGLGLRTAKNINQASLIKVGFHLTTRREDLWMEV 440
F+WGDS++ R H VSW+ C PK GGLG + ++N+A L+K+ ++L + + LW V
Sbjct: 255 FVWGDSNQGRKAHLVSWDVCCLPKMNGGLGFKRPHHMNEAFLMKMLWNLIKQPDKLWCRV 314
Query: 439 VRSKYKCGKDIIPSISRDRPGSNLWRGLVYVGEGVQNNTIWKVGKGNFTNCWEHIWIPEL 260
+ SKY D+ +IS S LW+ +V + + + + IW++G G TN W WI
Sbjct: 315 LYSKYGRNNDLNNNISSQPYDSPLWKAIVGIWDDFKRHVIWQIGDGRSTNFWLDKWISNN 374
Query: 259 GSL 251
SL
Sbjct: 375 TSL 377
Score = 38.5 bits (88), Expect(2) = 2e-23
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = -1
Query: 242 AQSPLSAVEANLVVADLVNNQGNWCLDRVVNILPREICQHIHSLPPPHSNRPRDRVAWRL 63
+ S S V+ + V D +N G W L+ +++ L +I I +LP P D + W
Sbjct: 379 SSSTQSYVDTTISVRDAINTSGVWDLNFLMDNLHVDIVNQILALPTPSDFDGPDTIGWGG 438
Query: 62 TKDGEFSTASAY 27
T +F+ SAY
Sbjct: 439 TNTLKFTVQSAY 450
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 80.1 bits (196), Expect(2) = 2e-20
Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Frame = -2
Query: 619 FLWGDSDESRHLHSVSWEKICKPKAWGGLGLRTAKNINQASLIKVGFHLTTRREDLWMEV 440
FLWG + E R H +SW+K+C+PKA GGLGLR +K++N+A L KVG+ L + LW V
Sbjct: 623 FLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARV 682
Query: 439 VRSKYKCGKDIIPS--ISRDRPGSNLWRGL-VYVGEGVQNNTI 320
+R KYK D+ S + S+ WR + V + EGV I
Sbjct: 683 LRRKYKV-TDVHDSSWLVPKATWSSTWRSIGVGLREGVAKGWI 724
Score = 44.3 bits (103), Expect(2) = 2e-20
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = -1
Query: 254 LANRAQSPLSAVEANLVVADLVNNQGNWCLDRVVNILPREICQHIHSLPPPHSNRPRDRV 75
L RA LS E N V + W + ++ LPR + +H++ RDR+
Sbjct: 729 LCTRATCLLSPEELNARVEEFWTEGVGWDMVKLGQCLPRSVTDRLHAVVIKGVLGLRDRI 788
Query: 74 AWRLTKDGEFSTASAY 27
+W+ T DG+F+ SAY
Sbjct: 789 SWQGTSDGDFTVGSAY 804
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 86.7 bits (213), Expect(2) = 8e-20
Identities = 42/117 (35%), Positives = 64/117 (54%)
Frame = -2
Query: 619 FLWGDSDESRHLHSVSWEKICKPKAWGGLGLRTAKNINQASLIKVGFHLTTRREDLWMEV 440
FLWG +R LHSV+W +ICKP+ GGLGLR A++ N+A L K+ + + + + LW++V
Sbjct: 829 FLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKV 888
Query: 439 VRSKYKCGKDIIPSISRDRPGSNLWRGLVYVGEGVQNNTIWKVGKGNFTNCWEHIWI 269
+R KY D + S+ WR ++ + + W VG G N W W+
Sbjct: 889 LREKYVKNADFLHLQSQSNCSWG-WRSIMKGKDVLAGAIKWNVGNGRKINFWNDWWV 944
Score = 35.8 bits (81), Expect(2) = 8e-20
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = -1
Query: 212 NLVVADLVNNQGNWCLDRVVNILPREICQHIHSLPPPHSNRPRDRVAWRLTKDGEFSTAS 33
++ V DL+ +Q W + NILP + + + P ++ D ++W + G + +S
Sbjct: 963 DIKVEDLITSQRRWDTGALHNILPTNMIDMVRATPIAINSEQEDFLSWPHSTTGMVTVSS 1022
Query: 32 AYESLIG 12
AY + G
Sbjct: 1023 AYSLIAG 1029
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 86.7 bits (213), Expect(2) = 8e-20
Identities = 42/117 (35%), Positives = 64/117 (54%)
Frame = -2
Query: 619 FLWGDSDESRHLHSVSWEKICKPKAWGGLGLRTAKNINQASLIKVGFHLTTRREDLWMEV 440
FLWG +R LHSV+W +ICKP+ GGLGLR A++ N+A L K+ + + + + LW++V
Sbjct: 829 FLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKV 888
Query: 439 VRSKYKCGKDIIPSISRDRPGSNLWRGLVYVGEGVQNNTIWKVGKGNFTNCWEHIWI 269
+R KY D + S+ WR ++ + + W VG G N W W+
Sbjct: 889 LREKYVKNADFLHLQSQSNCSWG-WRSIMKGKDVLAGAIKWNVGNGRKINFWNDWWV 944
Score = 35.8 bits (81), Expect(2) = 8e-20
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = -1
Query: 212 NLVVADLVNNQGNWCLDRVVNILPREICQHIHSLPPPHSNRPRDRVAWRLTKDGEFSTAS 33
++ V DL+ +Q W + NILP + + + P ++ D ++W + G + +S
Sbjct: 963 DIKVEDLITSQRRWDTGALHNILPTNMIDMVRATPIAINSEQEDFLSWPHSTTGMVTVSS 1022
Query: 32 AYESLIG 12
AY + G
Sbjct: 1023 AYSLIAG 1029
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 90.9 bits (224), Expect(2) = 2e-19
Identities = 50/119 (42%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Frame = -2
Query: 619 FLWGDSDESRHLHSVSWEKICKPKAWGGLGLRTAKNINQASLIKVGFHLTTRREDLWMEV 440
FLWG + E + H +SW KICKPKA GG+GLR+A+++N+A + KVG+ L +E LW V
Sbjct: 688 FLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARV 747
Query: 439 VRSKYKCGKDIIPSISRDRP-GSNLWRGL-VYVGEGVQNNTIWKVGKGNFTNCWEHIWI 269
VR KYK G S + +P S+ WR + V + E V W G G W W+
Sbjct: 748 VRKKYKVGGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWL 806
Score = 30.0 bits (66), Expect(2) = 2e-19
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -1
Query: 206 VVADLVNNQGNWCLDRVVNILPREICQHIHSLPPPHSNRPRDRVAWRLTKDGEFSTASAY 27
V AD W L+ + LP + + + S+ D ++W+ T+DG F+ SAY
Sbjct: 827 VAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQDGAFTVRSAY 886
Query: 26 ESLIG 12
L G
Sbjct: 887 SLLQG 891