BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00011337
         (2203 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-...   744   0.0  
ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago trun...   744   0.0  
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   538   e-150
ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|2...   523   e-145
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   519   e-144

>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 551

 Score =  744 bits (1922), Expect = 0.0
 Identities = 407/570 (71%), Positives = 453/570 (79%), Gaps = 14/570 (2%)
 Frame = +2

Query: 158  MGLCFGFRLNPRLRCTXXXXXXXXXXXXXXXXXXXXXXXXXAGGREIFSNPTRLSLLSTI 337
            MGL FGF LNPRLR                           AG RE   N TRLS  ST 
Sbjct: 1    MGLGFGFGLNPRLR-----YCLLLHTPHSFTNSPLCLSPSSAGVRETCFNFTRLSFPSTF 55

Query: 338  YEEGEASQKDFGKAFAVSSSALETLENGLLQTEGRKGNKGKRSLSSVHKMIDNTQLPFGE 517
            YEEGEA QKDFG+ FA SSSALETLEN  L  E  + NKGKRSLSSVHKMIDNTQ+PFGE
Sbjct: 56   YEEGEALQKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSLSSVHKMIDNTQMPFGE 115

Query: 518  -------------SHFRLLMENLGVLEETFADSEAVRLEKDIILQLGKLGALELFNVCLR 658
                          HFRLLMENL VLEETF DSEA+RLEK IILQLGKLGALELFNVCL 
Sbjct: 116  VSTVSKKFESFRAQHFRLLMENLCVLEETFVDSEALRLEKAIILQLGKLGALELFNVCLS 175

Query: 659  RSFGTSLASDHADGLLEQVGENKRDCNVDDCIGRVVVKSSKRKENKTRRKRACVATEASS 838
            RS GTSL S++AD              VDD   +VVV+SSK+KENKTRRKR  V+T  SS
Sbjct: 176  RSLGTSLVSNYAD-------------KVDDYKDKVVVQSSKKKENKTRRKREFVSTAVSS 222

Query: 839  QSLLPLKANQEDLLGFPSSFVKRESNTKNRRLMIAKREAEMSKGVKVLAELEKIRIAIEE 1018
            QSL  LKANQEDLLGF +S VKR  NTKN+R+++AKREAEMSKGVKVLAELEKIR AIEE
Sbjct: 223  QSLT-LKANQEDLLGFSASLVKRAPNTKNKRILVAKREAEMSKGVKVLAELEKIRTAIEE 281

Query: 1019 DTEQVASLSSWAEASGVDEKVLQQQLHHGYYCRDELIRSTRSLVLYFARKYRGMGIALED 1198
            DT++VASLS+WAEASGVDEKVLQ+ LH GYYC+DELIRSTRSLVLY ARKYRGMGIAL+D
Sbjct: 282  DTKRVASLSTWAEASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLARKYRGMGIALDD 341

Query: 1199 LLQAGYIGVLRGAERFDSTRGYRFSTYVQYWIRKSMSKMVARYARGITIPWSMSRAINQI 1378
            LLQAGY+GVL+GAERFDSTRGY+FSTYVQYWIRKS+ ++VARYARGI IPWS++RAINQI
Sbjct: 342  LLQAGYVGVLQGAERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVIPWSLNRAINQI 401

Query: 1379 QKARKTLKNTSMKYPDDYEIAKMTGLSLDKIRSASNCLRVVASINQKMGDF-SVKYMNYM 1555
            QKARK +K+T  K PDDYEIAKMTGLSLDKI+SASNCLR+VASI+QK+GD+  V+YM  +
Sbjct: 402  QKARKAMKSTHKKCPDDYEIAKMTGLSLDKIKSASNCLRIVASIDQKVGDYLGVEYMELL 461

Query: 1556 PDTFIGSPEEAVMKQHMRKDIHDLLKGLDSRERQILTLRFGLNDHQPRSLEYIGRLFKVS 1735
            PD  I SPE+AVMKQHMRKD+HDLLKGL+ RER+ILTLRFGLND+QPRSL+ IG LFKVS
Sbjct: 462  PDATIESPEDAVMKQHMRKDVHDLLKGLNLRERKILTLRFGLNDNQPRSLQDIGTLFKVS 521

Query: 1736 KEWIRKIEKKALTKLRNEATTSKLDFYLDL 1825
            KE IRKIEKKALTKL+NEAT SKL +YLDL
Sbjct: 522  KERIRKIEKKALTKLKNEATISKLHYYLDL 551


>ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
            gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor
            [Medicago truncatula]
          Length = 549

 Score =  744 bits (1921), Expect = 0.0
 Identities = 405/559 (72%), Positives = 453/559 (81%), Gaps = 3/559 (0%)
 Frame = +2

Query: 158  MGLCFGFRLNPRLRCTXXXXXXXXXXXXXXXXXXXXXXXXXAGGREIFSNPTRLSLLSTI 337
            MGLCFGFRLN +LR +                         AGGRE   NP RLSLLST+
Sbjct: 1    MGLCFGFRLNTKLRYSTVPLHHSSPFFSNSHIFLSSSSS--AGGRETLFNPVRLSLLSTV 58

Query: 338  YEEGEASQKDFGKAFAVSSSALETLENGLLQT-EGRKGNKGKRSLSSVHKMIDNTQLPFG 514
            YEEGE  QKDF K FA SS ALE  E  LLQ  E  K NKGKRSLSSVH+MIDN+ LPF 
Sbjct: 59   YEEGETLQKDFRKTFAFSS-ALEAPEKDLLQGGELTKVNKGKRSLSSVHEMIDNSHLPFE 117

Query: 515  ESHFRLLMENLGVLEETFADSEAVRLEKDIILQLGKLGALELFNVCLRRSFGTSLASDHA 694
            ESHF LLMENLGVLEETFADSEA+RLEK+IILQL KLGALELFNVCL  SFGTS  S+  
Sbjct: 118  ESHFGLLMENLGVLEETFADSEALRLEKNIILQLEKLGALELFNVCLTTSFGTSCISNCT 177

Query: 695  DGLLEQVGENKRDCNVDDCIGRVVVKSSKRKENKTRRKRACVATEASSQSLLPLKANQED 874
              +LEQV ENKR+  VDD  G+V+V SSKRKEN+ RRKR  V+   SS+SL PL  NQED
Sbjct: 178  HKVLEQVEENKRNHKVDDYTGKVIVHSSKRKENR-RRKRGSVSIAPSSRSL-PLDDNQED 235

Query: 875  -LLGFPSSFVKRESNTKNRRLMIAKREAEMSKGVKVLAELEKIRIAIEEDTEQVASLSSW 1051
             L   P+SFVKR SNTKN+R +IA+RE EMSKGVKVLAELEKIR AIEEDT+QV SLSSW
Sbjct: 236  PLRSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSW 295

Query: 1052 AEASGVDEKVLQQQLHHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQAGYIGVLR 1231
            AE SGVDEKVLQQQL+HGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQ GYIGVL+
Sbjct: 296  AETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQ 355

Query: 1232 GAERFDSTRGYRFSTYVQYWIRKSMSKMVARYARGITIPWSMSRAINQIQKARKTLKNTS 1411
            GAERFDST+GYRFSTYVQYWIRKSMS+MVA+YARGIT+PWSM++AI+QIQKARK LKNT+
Sbjct: 356  GAERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVPWSMNKAISQIQKARKVLKNTT 415

Query: 1412 MKYPDDYEIAKMTGLSLDKIRSASNCLRVVASINQKMGDFSVKYMNYMPDTFIGSPEEAV 1591
            MKYP+D EIAKMTGLSLDKI SAS+CLR V+S+ +      ++YM +MPD  I SPEE V
Sbjct: 416  MKYPNDLEIAKMTGLSLDKIMSASHCLRTVSSMYR-----GIEYMGHMPDLSIESPEETV 470

Query: 1592 MKQHMRKDIHDLLKGLDSRERQILTLRFGLN-DHQPRSLEYIGRLFKVSKEWIRKIEKKA 1768
            MKQH++KDIHD+L+ LDSRERQI+ LRFGLN DHQP+SLEYIG++FKVSKEWIRKIEKKA
Sbjct: 471  MKQHIKKDIHDILQSLDSRERQIIILRFGLNDDHQPKSLEYIGKIFKVSKEWIRKIEKKA 530

Query: 1769 LTKLRNEATTSKLDFYLDL 1825
            LTKLRNE   SKL++YLDL
Sbjct: 531  LTKLRNETNISKLNYYLDL 549


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  538 bits (1386), Expect = e-150
 Identities = 301/528 (57%), Positives = 388/528 (73%), Gaps = 16/528 (3%)
 Frame = +2

Query: 287  GREIFSNPTRLSLLSTIYEEGEASQKDFGKAFAVSSSALETLENGLLQTEGRKGNKGKRS 466
            GRE  S  +RLS LS I EEG+ + +D  K +A S  A++T+EN   Q EG K N GKRS
Sbjct: 35   GREATSYQSRLSFLSVISEEGDIAHRDPLKTYAYSY-AVQTVENEHSQGEGFKVNFGKRS 93

Query: 467  LSSVHKMIDNTQLPFGE-------------SHFRLLMENLGVLEETFADSEAVRLEKDII 607
               ++ +I + ++   E             S F LL+ENL +LE++FADS+A +LE+DI+
Sbjct: 94   HFGLN-IIGDAEVSLKEDIFVSPSSTKERTSRFSLLLENLNILEQSFADSDASKLEEDIL 152

Query: 608  LQLGKLGALELFNVCLRRSFGTSLASDHADGLLEQVGE-NKRDCNVDDCIGRVVVKSSKR 784
            LQLGKLGAL+LFN CL R+  T+   + +D   E +GE N    ++++ I +VVV ++K+
Sbjct: 153  LQLGKLGALKLFNTCLTRTLETTNVLEVSDVHTEIIGECNINGTSINNQI-KVVVHTAKK 211

Query: 785  KENKTRRKRACVATEASSQSL-LPLKANQEDLLGFPSSFVKRESNTKNRRLMIAKREAEM 961
            +E K+RR+RA       S SL LP +  Q        S  K+ S +K+RRL+IA+ EAEM
Sbjct: 212  EERKSRRERASARKGHKSPSLPLPSRPIQSGSEKPTVSSGKKASKSKSRRLIIARNEAEM 271

Query: 962  SKGVKVLAELEKIRIAIEEDTEQVASLSSWAEASGVDEKVLQQQLHHGYYCRDELIRSTR 1141
            ++G+KVLA+LEKIR  +EE+TE+V SLS WAEA+G+D KVLQQQL  G+YCRDELI+STR
Sbjct: 272  ARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDELIKSTR 331

Query: 1142 SLVLYFARKYRGMGIALEDLLQAGYIGVLRGAERFDSTRGYRFSTYVQYWIRKSMSKMVA 1321
            SLVLYFAR YRG GIALEDLLQAG +GVL GAERFD TRGYRFSTYVQYWIRKSMSK+V+
Sbjct: 332  SLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSMSKIVS 391

Query: 1322 RYARGITIPWSMSRAINQIQKARKTLKNTSMKYPDDYEIAKMTGLSLDKIRSASNCLRVV 1501
            R ARGI IP ++SRAI QIQKARK L  ++ KYPDD EIAK TGLSL KI SAS CLRVV
Sbjct: 392  RLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRVV 451

Query: 1502 ASINQKMGD-FSVKYMNYMPDTFIGSPEEAVMKQHMRKDIHDLLKGLDSRERQILTLRFG 1678
             SI+QK+G+  + KY+ ++PDT + SPEE VM+QHM +D+H+LL+ LDSRERQ+L LRFG
Sbjct: 452  GSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRFG 511

Query: 1679 LNDHQPRSLEYIGRLFKVSKEWIRKIEKKALTKLRNEATTSKLDFYLD 1822
            LND+QP+SLE IGR F VSKEW+R++EK+ +T+LRNE T   L  Y++
Sbjct: 512  LNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLRNEETCRNLRHYIN 559


>ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|222854562|gb|EEE92109.1|
            predicted protein [Populus trichocarpa]
          Length = 559

 Score =  523 bits (1346), Expect = e-145
 Identities = 287/531 (54%), Positives = 378/531 (71%), Gaps = 16/531 (3%)
 Frame = +2

Query: 281  AGGREIFSNPTRLSLLSTIYEEGEASQKDFGKAFAVSSSALETLENGLLQTEGRKGNKGK 460
            A G E   N  RLS LS + EEG+   K   K+FA SS+A + +EN  LQ E  K N  K
Sbjct: 32   ARGMEASVNQARLSFLSVVSEEGDILNKHSFKSFACSSAA-QNVENDCLQMERLKMNVDK 90

Query: 461  RSLSSVHKMIDNTQLPFGE----SHFRL----------LMENLGVLEETFADSEAVRLEK 598
             S  S++ M+ N ++   E    SH RL          L++NL  LE+  AD +A++LE+
Sbjct: 91   TSHVSINNMMGNDKVSVEEEISTSHTRLRERMTSRISFLLDNLDTLEKLVADLDALKLER 150

Query: 599  DIILQLGKLGALELFNVCLRRSFGTSLASDHADGLLEQVGENKRDCNVDDCIGRVVVKSS 778
            DI+LQLG+LGALE FN CL R+  TS   D +    E  GE+K D  + D  G+ VV++ 
Sbjct: 151  DILLQLGRLGALEFFNACLSRTLQTSNVLDLSAVPTENTGESKTDGMLGDLTGKTVVRTG 210

Query: 779  KRKENKTRRKRACVATEASSQSL-LPLKANQEDLLGFPSSFVKRESNTKNRRLMIAKREA 955
            K++E K RR+RA       + SL LP K  Q +L     +FVKR S++ +RR +IA+ EA
Sbjct: 211  KKEERKFRRERAASDNGKKTTSLSLPSKTVQNNLP--KPTFVKRTSSSSSRRSLIARNEA 268

Query: 956  EMSKGVKVLAELEKIRIAIEEDTEQVASLSSWAEASGVDEKVLQQQLHHGYYCRDELIRS 1135
            +M++GVKV ++LE+IR  +EE+T QV SLS WAEA+G+D+KVLQQQL  G+YCRDELI++
Sbjct: 269  KMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFGWYCRDELIKN 328

Query: 1136 TRSLVLYFARKYRGMGIALEDLLQAGYIGVLRGAERFDSTRGYRFSTYVQYWIRKSMSKM 1315
            T SLVLY AR YRGMGIA+EDL+QAG +G+L+GAERFD TRGYRFSTYVQYWIRKSM K+
Sbjct: 329  THSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFSTYVQYWIRKSMLKI 388

Query: 1316 VARYARGITIPWSMSRAINQIQKARKTLKNTSMKYPDDYEIAKMTGLSLDKIRSASNCLR 1495
            V R+ARGI IP+++SR+IN+IQKARK L N+  +YPDD+E+AK TGLSL KI SA  CLR
Sbjct: 389  VERHARGIQIPYALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLSLAKIESAQKCLR 448

Query: 1496 VVASINQKMGD-FSVKYMNYMPDTFIGSPEEAVMKQHMRKDIHDLLKGLDSRERQILTLR 1672
            VVAS++QK+G+    KY  ++PD  I +PEEAVM+QHMR++I+DLL+GLDSRE+Q++ LR
Sbjct: 449  VVASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVMRQHMREEIYDLLRGLDSREKQVMVLR 508

Query: 1673 FGLNDHQPRSLEYIGRLFKVSKEWIRKIEKKALTKLRNEATTSKLDFYLDL 1825
            +G  D+QP+SL  IGRLF+VSKE +RKIEKK + KLR+E     L  Y+ L
Sbjct: 509  YGFKDNQPKSLAEIGRLFRVSKERVRKIEKKIMIKLRDEGIRRNLSRYMIL 559


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  519 bits (1336), Expect = e-144
 Identities = 289/529 (54%), Positives = 363/529 (68%), Gaps = 16/529 (3%)
 Frame = +2

Query: 287  GREIFSNPTRLSLLSTIYEEGEASQKDFGKAFAVSSSALETLENGLLQTEGRKGNKGKRS 466
            G+E   + TR S  S   E+ E+  KD  K FA SS AL+T EN     E  K   GK S
Sbjct: 34   GKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKCS 93

Query: 467  LSSVHKMIDNTQLPFGE--------------SHFRLLMENLGVLEETFADSEAVRLEKDI 604
               + K+++ +Q P GE              S F LL+ENL +LEE FADS  VRLE+DI
Sbjct: 94   HGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDI 153

Query: 605  ILQLGKLGALELFNVCLRRSFGTSLASDHADGLLEQVGENKRDCNVDDCIGRVVVKSSKR 784
            ++QLG+LGAL+LF +CL R+  TS + D      E + E + +  VDD + +VVV+S K+
Sbjct: 154  MVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKK 213

Query: 785  KENKTRRKRACVATEASSQSLLPLKANQEDLLGFPS-SFVKRESNTKNRRLMIAKREAEM 961
            +E K++R+RA    +      LP K  ++   G PS S VKR  N++ +RLM AK EAEM
Sbjct: 214  EERKSKRERALEKADNIYAFPLPSKTIRKGP-GRPSVSTVKRTLNSRRKRLMNAKNEAEM 272

Query: 962  SKGVKVLAELEKIRIAIEEDTEQVASLSSWAEASGVDEKVLQQQLHHGYYCRDELIRSTR 1141
            SKGVK++A LE+IR  +EE+   VASLS+WAEA+GVD+KVLQQQL  G+YCRDEL+RST 
Sbjct: 273  SKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTH 332

Query: 1142 SLVLYFARKYRGMGIALEDLLQAGYIGVLRGAERFDSTRGYRFSTYVQYWIRKSMSKMVA 1321
            SLVLY AR YRGMG+A ED+LQAG +GVL+GAERFD T+GYRFSTYVQYWIRKSMS +VA
Sbjct: 333  SLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVA 392

Query: 1322 RYARGITIPWSMSRAINQIQKARKTLKNTSMKYPDDYEIAKMTGLSLDKIRSASNCLRVV 1501
            R+ARG+ IP++++RAI QIQKARK L  +  +YPDD EIAK TGLSL KIRSA NCLRVV
Sbjct: 393  RHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVV 452

Query: 1502 ASINQKMGD-FSVKYMNYMPDTFIGSPEEAVMKQHMRKDIHDLLKGLDSRERQILTLRFG 1678
             S +Q   D +    + + PDT I SPEE  M+Q  RKDIH+LLKGLD RERQIL LR+G
Sbjct: 453  GSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYG 512

Query: 1679 LNDHQPRSLEYIGRLFKVSKEWIRKIEKKALTKLRNEATTSKLDFYLDL 1825
              + Q +SLE IGR F VSKEWIRK+EK AL  LR+E     L  Y+D+
Sbjct: 513  FGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYVDV 561