BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00010822
         (216 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago t...    98   6e-19
gb|AFK49090.1| unknown [Medicago truncatula]                           97   2e-18
ref|XP_003523387.1| PREDICTED: RNA polymerase sigma factor rpoD-...    87   1e-15
dbj|BAM05478.1| sigma-like factor 5B [Glycine max]                     85   5e-15
ref|XP_003526693.1| PREDICTED: RNA polymerase sigma factor rpoD-...    85   5e-15

>ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
           gi|355491246|gb|AES72449.1| RNA polymerase sigma factor
           rpoD [Medicago truncatula]
          Length = 514

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 48/71 (67%), Positives = 62/71 (87%)
 Frame = -3

Query: 214 SDTCDAEYIDGKIKRVSRRGKKIGDGNKEEELNNDRVVRSRKTKAKRLNLDERIELQKNK 35
           +D CDA+YI+ KIKRVSRRGKKIGD +KE+  N+DRVVR++KTKAKR+NLDERI L+ ++
Sbjct: 111 TDICDADYIERKIKRVSRRGKKIGDVSKEDS-NSDRVVRNQKTKAKRMNLDERIALKTSE 169

Query: 34  EGEEVIPTRRK 2
             E+VIPTR+K
Sbjct: 170 NSEDVIPTRKK 180


>gb|AFK49090.1| unknown [Medicago truncatula]
          Length = 210

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 47/71 (66%), Positives = 61/71 (85%)
 Frame = -3

Query: 214 SDTCDAEYIDGKIKRVSRRGKKIGDGNKEEELNNDRVVRSRKTKAKRLNLDERIELQKNK 35
           +D CDA+YI+ KIKRVSRRGKKIGD +KE+  N+DRV R++KTKAKR+NLDERI L+ ++
Sbjct: 111 TDICDADYIERKIKRVSRRGKKIGDVSKEDS-NSDRVARNQKTKAKRMNLDERIALKTSE 169

Query: 34  EGEEVIPTRRK 2
             E+VIPTR+K
Sbjct: 170 NSEDVIPTRKK 180


>ref|XP_003523387.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 509

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
 Frame = -3

Query: 214 SDTCDAEYIDGKIKRVSRRGKKIGDGNKEEELNNDRVVR--SRKTKAKRLNLDERIELQK 41
           S T +AE ID KIKRVSRRGKK+ D ++E+EL  DRVVR  ++  KAKRL LD+RI L+ 
Sbjct: 103 SHTGNAECIDDKIKRVSRRGKKVVDESEEKELKGDRVVRRQNKNKKAKRLTLDQRISLKN 162

Query: 40  NKEGEEVIPTRRK 2
           NK G+EVIPTR+K
Sbjct: 163 NKRGDEVIPTRKK 175


>dbj|BAM05478.1| sigma-like factor 5B [Glycine max]
          Length = 507

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 44/69 (63%), Positives = 55/69 (79%), Gaps = 2/69 (2%)
 Frame = -3

Query: 202 DAEYIDGKIKRVSRRGKKIGDGNKEEELNNDRVVR--SRKTKAKRLNLDERIELQKNKEG 29
           +AE IDGKIKRVSRRGKK+ D ++E+EL  D VVR  ++  K KRLNLD+RI L+ NK G
Sbjct: 105 NAECIDGKIKRVSRRGKKVVDESEEKELKGDWVVRNQNKNKKPKRLNLDQRISLKNNKSG 164

Query: 28  EEVIPTRRK 2
           +EVIPTR+K
Sbjct: 165 DEVIPTRKK 173


>ref|XP_003526693.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 507

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 44/69 (63%), Positives = 55/69 (79%), Gaps = 2/69 (2%)
 Frame = -3

Query: 202 DAEYIDGKIKRVSRRGKKIGDGNKEEELNNDRVVR--SRKTKAKRLNLDERIELQKNKEG 29
           +AE IDGKIKRVSRRGKK+ D ++E+EL  D VVR  ++  K KRLNLD+RI L+ NK G
Sbjct: 105 NAECIDGKIKRVSRRGKKVVDESEEKELKGDWVVRNQNKNKKPKRLNLDQRISLKNNKSG 164

Query: 28  EEVIPTRRK 2
           +EVIPTR+K
Sbjct: 165 DEVIPTRKK 173