BLASTX nr result

ID: Glycyrrhiza23_contig00010718 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00010718
         (372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003617812.1| Nuclear transcription factor Y subunit B-3 [...    97   6e-25
gb|AFK41105.1| unknown [Medicago truncatula]                           97   6e-25
ref|XP_003532175.1| PREDICTED: nuclear transcription factor Y su...    95   1e-21
ref|XP_003553001.1| PREDICTED: nuclear transcription factor Y su...    93   3e-17
gb|AFK49662.1| nuclear transcription factor Y subunit B12 [Medic...    89   4e-16

>ref|XP_003617812.1| Nuclear transcription factor Y subunit B-3 [Medicago truncatula]
           gi|355519147|gb|AET00771.1| Nuclear transcription factor
           Y subunit B-3 [Medicago truncatula]
           gi|388523229|gb|AFK49667.1| nuclear transcription factor
           Y subunit B17 [Medicago truncatula]
          Length = 187

 Score = 96.7 bits (239), Expect(2) = 6e-25
 Identities = 46/54 (85%), Positives = 50/54 (92%)
 Frame = +3

Query: 3   INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGEKTVAARDKDAMPIGASSSS 164
           INGDDLLWAMTTLGFE+YVEPLK+YLQRFREIEGEKTVAARDKD +   +SSSS
Sbjct: 82  INGDDLLWAMTTLGFEEYVEPLKIYLQRFREIEGEKTVAARDKDGVAPSSSSSS 135



 Score = 42.4 bits (98), Expect(2) = 6e-25
 Identities = 23/46 (50%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 239 SSSSAFDYAXXXXXXXXXXXXX--GHVYGSGGFHQVTGAPVVMGGG 370
           SSSS FDY                GHVYGSGGFHQV G PV    G
Sbjct: 132 SSSSVFDYGAPPPQVGLIMHHQHQGHVYGSGGFHQVPGGPVYPNAG 177


>gb|AFK41105.1| unknown [Medicago truncatula]
          Length = 184

 Score = 96.7 bits (239), Expect(2) = 6e-25
 Identities = 46/54 (85%), Positives = 50/54 (92%)
 Frame = +3

Query: 3   INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGEKTVAARDKDAMPIGASSSS 164
           INGDDLLWAMTTLGFE+YVEPLK+YLQRFREIEGEKTVAARDKD +   +SSSS
Sbjct: 82  INGDDLLWAMTTLGFEEYVEPLKIYLQRFREIEGEKTVAARDKDGVAPSSSSSS 135



 Score = 42.4 bits (98), Expect(2) = 6e-25
 Identities = 23/46 (50%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 239 SSSSAFDYAXXXXXXXXXXXXX--GHVYGSGGFHQVTGAPVVMGGG 370
           SSSS FDY                GHVYGSGGFHQV G PV    G
Sbjct: 132 SSSSVFDYGAPPPQVGLIMHHQHQGHVYGSGGFHQVPGGPVYPNAG 177


>ref|XP_003532175.1| PREDICTED: nuclear transcription factor Y subunit B-3-like [Glycine
           max]
          Length = 191

 Score = 94.7 bits (234), Expect(2) = 1e-21
 Identities = 45/54 (83%), Positives = 50/54 (92%)
 Frame = +3

Query: 3   INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGEKTVAARDKDAMPIGASSSS 164
           INGDDLLWAMTTLGFEDYVEPLK YLQRFRE+EGEKTVAARDKDA P+  +++S
Sbjct: 83  INGDDLLWAMTTLGFEDYVEPLKGYLQRFREMEGEKTVAARDKDAPPLTNATNS 136



 Score = 33.1 bits (74), Expect(2) = 1e-21
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 239 SSSSAFDYAXXXXXXXXXXXXXGHVYGSGGFHQVTGAPVVMG 364
           S+  + +YA             GHVYGS GFHQV G  +  G
Sbjct: 136 SAYESANYAAAAAVPGGIMMHQGHVYGSAGFHQVAGGAIKGG 177


>ref|XP_003553001.1| PREDICTED: nuclear transcription factor Y subunit B-3-like [Glycine
           max]
          Length = 188

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 44/47 (93%), Positives = 45/47 (95%)
 Frame = +3

Query: 3   INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGEKTVAARDKDAMP 143
           INGDDLLWAMTTLGFEDYVEPLK YLQRFRE+EGEKTVAARDKDA P
Sbjct: 83  INGDDLLWAMTTLGFEDYVEPLKGYLQRFREMEGEKTVAARDKDAPP 129


>gb|AFK49662.1| nuclear transcription factor Y subunit B12 [Medicago truncatula]
          Length = 190

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 44/52 (84%), Positives = 47/52 (90%)
 Frame = +3

Query: 3   INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGEKTVAARDKDAMPIGASS 158
           INGDDLLWAMTTLGFE+YVEPLK YLQRFRE+EGEKTV ARDKDA P G+ S
Sbjct: 86  INGDDLLWAMTTLGFEEYVEPLKGYLQRFREMEGEKTVGARDKDA-PQGSGS 136


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