BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00009526
         (3883 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me...  2006   0.0  
ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerase D sub...  2005   0.0  
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D sub...  1994   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1775   0.0  
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...  1755   0.0  

>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
            gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
            subunit beta [Medicago truncatula]
          Length = 1237

 Score = 2006 bits (5198), Expect = 0.0
 Identities = 1007/1240 (81%), Positives = 1080/1240 (87%), Gaps = 50/1240 (4%)
 Frame = -2

Query: 3726 MGHVGSSKDGAXXXXXXXXXXXXXEALLPTNAEILEELGENTVRNFCKKASSKFFEEYGL 3547
            M H+GSSKD A             +    +NAEIL ELG++ V+ FCKKAS  FF++YGL
Sbjct: 1    MEHIGSSKD-ANNTNYTEMDIDLDDDEDQSNAEILNELGDDMVKYFCKKASVMFFDQYGL 59

Query: 3546 VSHQINSYNQFLSNGLQNTFDSFGDLTVTPGFDPSKKGDSEHYRYASVKFGKVTLDPPKF 3367
            +SHQINSYNQF+++GLQ+ FDSFGDLTVTPGFDPSKKG  EHYRYA+VKFGKVTL+ PKF
Sbjct: 60   ISHQINSYNQFINSGLQSAFDSFGDLTVTPGFDPSKKGADEHYRYATVKFGKVTLERPKF 119

Query: 3366 WCGEGNTQEFKMLPRHARLQRMTYSSKMKVSVNVEVYVPKKVRSDKFKTGKEELIDREIL 3187
            WCGEGN QE KMLPRHARLQRMTY+SKMKV V+++VYV KKVRSDKFKTGKEE ID++I 
Sbjct: 120  WCGEGNAQELKMLPRHARLQRMTYASKMKVDVHIQVYVMKKVRSDKFKTGKEEYIDKDIK 179

Query: 3186 NQDNREIIIGRLPVMVKSDLCWMKGAEKGDCEFDHGGYFLIKGAEK-------------- 3049
             +D REI IGRLPVMVKSDLCWM  AEKGDCEFDHGGYFLIKGAEK              
Sbjct: 180  WEDTREITIGRLPVMVKSDLCWMSEAEKGDCEFDHGGYFLIKGAEKLWRLLVADFDIADV 239

Query: 3048 -----------------------------------IFIAQEQLYIKRLWVLNTPCWTVAH 2974
                                               IFIAQEQ+++KRLWV N P W VA 
Sbjct: 240  VNGGQYCRFFRHKCATKWSKLQKFGSPPQYAIENTIFIAQEQIFLKRLWVSNIPYWAVAF 299

Query: 2973 KSQMKRNRLVIKLVGNSRSEEINNGEKVLTVYFLSVEIPVWILFFALGVSSDKEIVDLID 2794
            KSQMKRNR+V+KLV  S +E I NGEK+LTVYFLSVEIPVWILFFALGV+SDKEIVDLID
Sbjct: 300  KSQMKRNRMVVKLVEGS-TEGITNGEKLLTVYFLSVEIPVWILFFALGVTSDKEIVDLID 358

Query: 2793 YGSGDARIHNILFASIRDADEKCEGFRMGKTALYYMEEHVKGVQFPPPESIDDCLNMYLF 2614
            YG  + RI NILFASIR+AD+KCE FR GK AL ++EE VKGVQFPP ESID+C NMY+F
Sbjct: 359  YGEANGRIENILFASIREADDKCEAFRRGKNALLFLEERVKGVQFPPAESIDECFNMYVF 418

Query: 2613 PNIGGLSRKARYLAYMVKVLLLAYTGRRKCDNRDDFRNKRLDLAGELLDRELKVHIAHAR 2434
            PN+ GL RKARYLAYMVKVLLLAYTGRRK DNRDDFRNKRL+LAGELL+RE+KVH AHAR
Sbjct: 419  PNVKGLKRKARYLAYMVKVLLLAYTGRRKTDNRDDFRNKRLELAGELLEREIKVHFAHAR 478

Query: 2433 KRMAKALQRDLYGDREVRPIEHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLG 2254
            KRM KALQRDLYG+REVR IEHYLDASIITNGLQRAFSTGAWTHP+KRMERISGVVATLG
Sbjct: 479  KRMGKALQRDLYGEREVRQIEHYLDASIITNGLQRAFSTGAWTHPFKRMERISGVVATLG 538

Query: 2253 RTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGL 2074
            RTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTG+
Sbjct: 539  RTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGV 598

Query: 2073 VSTNVTESLLPQLFDCGMEELVDDTTTSLSKNDKVFLNGDWVGVCQDSISFVAELRSKRR 1894
            VST+VTES+LPQL DCGMEELVDDTTT L K DKVFLNGDWVGVC DSISFVAELR++RR
Sbjct: 599  VSTDVTESILPQLSDCGMEELVDDTTTVLGKKDKVFLNGDWVGVCSDSISFVAELRTRRR 658

Query: 1893 KNELPHQVEIKRDQLQQEVRIYSDAGRILRPLLVVSNLLKIKGSKAEH-SFQSLLENGVI 1717
            +NELPHQVEIKRDQ QQEVRI SDAGRILRPLLVVSNLLKIKGSK+EH SFQSLL+NGVI
Sbjct: 659  RNELPHQVEIKRDQCQQEVRILSDAGRILRPLLVVSNLLKIKGSKSEHKSFQSLLDNGVI 718

Query: 1716 ELVGPXXXXXXCTAWGVQYLFGKEGKTSVKYTHCELDMSFLLGLSCSLDPFANHDHARRV 1537
            EL+GP       TAWGVQYLFGKEGK+SVKYTHCELDMSFLLGLSCSL PFANHDHARRV
Sbjct: 719  ELIGPEEEEDFKTAWGVQYLFGKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRV 778

Query: 1536 LYQSQKHSSQAIGFSTTNPDIRIDTLSHQLFYPQKPLFRTMTTDCLGKPEYPLGHNRVLP 1357
            LYQSQKHSSQAIGF+TTNP+IR+D LSHQLFYPQ+PLF+TMT+DCLGKP Y LG ++V+P
Sbjct: 779  LYQSQKHSSQAIGFATTNPNIRVDALSHQLFYPQRPLFQTMTSDCLGKPGY-LGQSKVVP 837

Query: 1356 KEEFYNGQNAIVAVNVHMGYNQEDSLVMNRASLQRGMFRSEHIRXXXXXXXXXXXXXXXX 1177
            K EFYNGQNAIVAVNVH+GYNQEDSLVMNRASLQRGMFRSEHIR                
Sbjct: 838  KSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAEIENKESSEKRK 897

Query: 1176 XXEDVVMFGKIQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCAESGADHSVKLKHTERG 997
              ED+V FGKIQSKIGRVDSLDDDGFP+VGANLQSGDIIIGRCA+SG DHS+KLKHTERG
Sbjct: 898  KPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQSGDIIIGRCADSGTDHSIKLKHTERG 957

Query: 996  YVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIV 817
            YVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFT+QGIV
Sbjct: 958  YVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIV 1017

Query: 816  PDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFSTPSVEAITDQLHRAGFSRW 637
            PDIVINPHAFPSRQTPGQLLEAALGKGIAC G LR+ATPFST SVEAITDQLHRAGFSRW
Sbjct: 1018 PDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRW 1077

Query: 636  GNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 457
            GNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG
Sbjct: 1078 GNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1137

Query: 456  IKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKSVANVILRPVSGGRKIRGPY 277
            IKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCK+VANVILRPVSGGRKIRGPY
Sbjct: 1138 IKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPY 1197

Query: 276  CRFCESADEIVVANVPYGAKLLCQELFSMGINLKFDTELC 157
            CRFCESAD+IVVA+VPYGAKLL QELFSMGINLKF+TELC
Sbjct: 1198 CRFCESADDIVVASVPYGAKLLSQELFSMGINLKFETELC 1237


>ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
            max]
          Length = 1205

 Score = 2005 bits (5195), Expect = 0.0
 Identities = 991/1205 (82%), Positives = 1076/1205 (89%), Gaps = 15/1205 (1%)
 Frame = -2

Query: 3726 MGHVGSSKDGAXXXXXXXXXXXXXEA-----------LLPTNAEILEELGENTVRNFCKK 3580
            MGHVGSSKDG              +            L PTN+EILEELGE+ V+ +CKK
Sbjct: 1    MGHVGSSKDGTKVGLSAAAMDIDDDDDDDDDDLGDVDLDPTNSEILEELGEDMVKYWCKK 60

Query: 3579 ASSKFFEEYGLVSHQINSYNQFLSNGLQNTFDSFGDLTVTPGFDPSKKGDSEHYRYASVK 3400
            AS  FF+EYGL+SHQINS+N F++ GLQNTFDSFGDL VTPGFDPSKKG++EH+RYASVK
Sbjct: 61   ASMLFFDEYGLISHQINSFNHFVAIGLQNTFDSFGDLVVTPGFDPSKKGENEHFRYASVK 120

Query: 3399 FGKVTLDPPKFWCGEGNTQEFKMLPRHARLQRMTYSSKMKVSVNVEVYVPKKVRSDKFKT 3220
            FGKV LD P FW GEGN QEFKMLPRHAR+QRMTY+SK+K+ V V+VYVPKKVRSDKFKT
Sbjct: 121  FGKVKLDKPMFWGGEGNAQEFKMLPRHARIQRMTYASKVKIQVKVQVYVPKKVRSDKFKT 180

Query: 3219 GKEELIDREILNQDNREIIIGRLPVMVKSDLCWMKGAEKGDCEFDHGGYFLIKGAEKIFI 3040
            GKEE +DREI+ +D REIIIGRLPVMVKSDLCWMK AEK D EFDHGGYF++KGAEK FI
Sbjct: 181  GKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKDAEKDDDEFDHGGYFIVKGAEKTFI 240

Query: 3039 AQEQLYIKRLWVLNTPCWTVAHKSQMKRNRLVIKLVGNSRSEEINNGEKVLTVYFLSVEI 2860
            AQEQLY+KRLWV+N+P W +A+KSQMKRNR+VIKLVGNSRSEE+ NG+  LTVYFLSVE+
Sbjct: 241  AQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRSEEVENGDMCLTVYFLSVEV 300

Query: 2859 PVWILFFALGVSSDKEIVDLIDYGSGDARIHNILFASIRDADEKCEGFRMGKTALYYMEE 2680
            PVW+LFFALGVSSDKEIVDLI  G+ D RI NILFAS+RDADEKC  FR  + A+ Y+E+
Sbjct: 301  PVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRDADEKCGAFRRVRNAVQYLEK 360

Query: 2679 HVKGVQFPPPESIDDCLNMYLFPNIGGLSRKARYLAYMVKVLLLAYTGRRKCDNRDDFRN 2500
             VK VQFPP ES+ +CL MY+FP I GL+RKAR+LAYMVK LLLAYTGRRKCDNRDDFRN
Sbjct: 361  CVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRN 420

Query: 2499 KRLDLAGELLDRELKVHIAHARKRMAKALQRDLYGDREVRPIEHYLDASIITNGLQRAFS 2320
            KRL+LA ELLDRELKVH+AHARKRMAKALQRDLYGDR+VRPIEHYLDASIITNGLQRAFS
Sbjct: 421  KRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFS 480

Query: 2319 TGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKV 2140
            TGAW+HPYKRMERISGVVA +GRTNPLQTMAELRR RQQVQYTGKVGDARYPHPSHWGKV
Sbjct: 481  TGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKV 540

Query: 2139 CFLSTPDGENCGLVKNLAVTGLVS---TNVTESLLPQLFDCGMEELVDDTTTSLSKNDKV 1969
            CFL+TPDGENCGLVKNL+VTGLVS   T+VTES+L +L DCGM+ELVDDT+T L   DKV
Sbjct: 541  CFLTTPDGENCGLVKNLSVTGLVSTDVTDVTESILLKLVDCGMQELVDDTSTHLGSMDKV 600

Query: 1968 FLNGDWVGVCQDSISFVAELRSKRRKNELPHQVEIKRDQLQQEVRIYSDAGRILRPLLVV 1789
             LNGDWVGVC DS SFVAELRS+RR+NELPHQVEIKRDQ Q EVRIYSDAGRILRPLLVV
Sbjct: 601  LLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVV 660

Query: 1788 SNLLKIKGSKAE-HSFQSLLENGVIELVGPXXXXXXCTAWGVQYLFGKEGKTSVKYTHCE 1612
             NLLKIKG K++ +SFQSLL+ GVIEL+GP      CTAWGV+YLFGKEGK SVKYTHCE
Sbjct: 661  GNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKEGKRSVKYTHCE 720

Query: 1611 LDMSFLLGLSCSLDPFANHDHARRVLYQSQKHSSQAIGFSTTNPDIRIDTLSHQLFYPQK 1432
            LDMSFLLGLSCSL PFANHDHARRVLYQSQKHSSQAIGFSTTNP+IR+DTLSHQL YPQK
Sbjct: 721  LDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQK 780

Query: 1431 PLFRTMTTDCLGKPEYPLGHNRVLPKEEFYNGQNAIVAVNVHMGYNQEDSLVMNRASLQR 1252
            PLFRTMT+DCLGKP++ LG +++ PK EFYNGQNAIVAVNVH+GYNQEDSLVMNRASLQR
Sbjct: 781  PLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQR 840

Query: 1251 GMFRSEHIRXXXXXXXXXXXXXXXXXXEDVVMFGKIQSKIGRVDSLDDDGFPYVGANLQS 1072
            GMFRSEHIR                  ED+V F K+QSKIGRVDSLDDDGFPYVGANLQS
Sbjct: 841  GMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQS 900

Query: 1071 GDIIIGRCAESGADHSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSS 892
            GDIIIG+CAESGAD+SVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSS
Sbjct: 901  GDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSS 960

Query: 891  MHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLR 712
            MHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGG+L+
Sbjct: 961  MHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILK 1020

Query: 711  HATPFSTPSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDK 532
             ATPFSTPSV+AIT+QLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDK
Sbjct: 1021 QATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDK 1080

Query: 531  VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHI 352
            VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHI
Sbjct: 1081 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHI 1140

Query: 351  CSKCKSVANVILRPVSGGRKIRGPYCRFCESADEIVVANVPYGAKLLCQELFSMGINLKF 172
            CSKCK VANVILRPVSGGRKIRGPYCR CESAD+IVVA+VPYGAKLLCQELFSMGINLKF
Sbjct: 1141 CSKCKKVANVILRPVSGGRKIRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKF 1200

Query: 171  DTELC 157
            +T+LC
Sbjct: 1201 ETQLC 1205


>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
            max]
          Length = 1205

 Score = 1994 bits (5165), Expect = 0.0
 Identities = 990/1205 (82%), Positives = 1068/1205 (88%), Gaps = 15/1205 (1%)
 Frame = -2

Query: 3726 MGHVGSSKDG--------AXXXXXXXXXXXXXEALLPTNAEILEELGENTVRNFCKKASS 3571
            MGHVGSSKDG        A               L PTNAEILEELGE+ V+ +CKKAS 
Sbjct: 1    MGHVGSSKDGTEAGPSAAAMGIDDDEDIDLGDVDLDPTNAEILEELGEDIVKYWCKKASM 60

Query: 3570 KFFEEYGLVSHQINSYNQFLSNGLQNTFDSFGDLTVTPGFDPSKKGDSEHYRYASVKFGK 3391
             FF EYGL+SHQINS+N F+  GLQ TF+SFGDL VTPGFDPSKKG++EH+RYASVKFG 
Sbjct: 61   LFFNEYGLISHQINSFNHFIHTGLQKTFESFGDLVVTPGFDPSKKGENEHFRYASVKFGN 120

Query: 3390 VTLDPPKFWCGEGNTQEFKMLPRHARLQRMTYSSKMKVSVNVEVYVPKKVRSDKFKTGKE 3211
            V LD P FW GEGN QEFKMLPRHAR+QRMTY+SK+K+ V V+VYVPKKVRSDKFKTGK 
Sbjct: 121  VKLDKPMFWGGEGNAQEFKMLPRHARIQRMTYASKVKIQVKVQVYVPKKVRSDKFKTGKA 180

Query: 3210 ELIDREILNQDNREIIIGRLPVMVKSDLCWMKGAEKGDCEFDHGGYFLIKGAEKIFIAQE 3031
            E +DRE++ +D REIIIGRLPVMVKSDLCWMK AEK D EFDHGGYF++KGAEK FIAQE
Sbjct: 181  EFLDREVMKEDEREIIIGRLPVMVKSDLCWMKEAEKEDDEFDHGGYFIVKGAEKTFIAQE 240

Query: 3030 QLYIKRLWVLNTPCWTVAHKSQMKRNRLVIKLVGNSRSEEINNGEKVLTVYFLSVEIPVW 2851
            QLY+KRLWV+N+P W +A+KSQMKRNR+VIKLVGNSR EE+ NG+  L VYFLSVE+PVW
Sbjct: 241  QLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRGEEVENGDMSLAVYFLSVEVPVW 300

Query: 2850 ILFFALGVSSDKEIVDLIDYGSGDARIHNILFASIRDADEKCEGFRMGKTALYYMEEHVK 2671
            +LFFALGVSSDKEIVDLI  G+ D RI NILFAS+RDADEKC  FR G+ A+ Y+E+ VK
Sbjct: 301  VLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRDADEKCGAFRRGRHAVQYLEKCVK 360

Query: 2670 GVQFPPPESIDDCLNMYLFPNIGGLSRKARYLAYMVKVLLLAYTGRRKCDNRDDFRNKRL 2491
             VQFPP ES+ +CL MY+FP I GL+RKAR+LAYMVK LLLAYTGRRKCDNRDDFRNKRL
Sbjct: 361  SVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRL 420

Query: 2490 DLAGELLDRELKVHIAHARKRMAKALQRDLYGDREVRPIEHYLDASIITNGLQRAFSTGA 2311
            +LA ELLDRELKVHIAHARKRMAKALQRDLYGDR+VRPIEHYLDASIITNGLQRAFSTGA
Sbjct: 421  ELASELLDRELKVHIAHARKRMAKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGA 480

Query: 2310 WTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFL 2131
            W+HPYKRMERISGVVA +GRTNPLQTMAELRR RQQVQYTGKVGDARYPHPSHWGKVCFL
Sbjct: 481  WSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFL 540

Query: 2130 STPDGENCGLVKNLAVTGLVSTN---VTESLLPQLFDCGMEELVDDTTTSLSKNDKVFLN 1960
            STPDGENCGLVKNLAVTGLVST+   V+E +LP+L DCGMEELVDDT+T L   DKV LN
Sbjct: 541  STPDGENCGLVKNLAVTGLVSTDVSAVSEYILPKLLDCGMEELVDDTSTHLGNKDKVLLN 600

Query: 1959 GDWVGVCQDSISFVAELRSKRRKNELPHQVEIKRDQLQQEVRIYSDAGRILRPLLVVSNL 1780
            GDWVGVC DS SFVAELRS+RR+NELPHQVEIKRDQ Q EVRIYSDAGRILRPLLVV NL
Sbjct: 601  GDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNL 660

Query: 1779 LKIKGSKAE-HSFQSLLENGVIELVGPXXXXXXCTAWGVQYLFGKEGKTSVKYTHCELDM 1603
            LKIKG K++ +SFQSLL+ GVIEL+GP      CTAWGV+YLFGKEGK SVKYTHCELDM
Sbjct: 661  LKIKGFKSDCNSFQSLLDKGVIELIGPEEEEDCCTAWGVEYLFGKEGKRSVKYTHCELDM 720

Query: 1602 SFLLGLSCSLDPFANHDHARRVLYQSQKHSSQAIGFSTTNPDIRIDTLSHQLFYPQKPLF 1423
            SFLLGLSCSL PFANHDHARRVLYQSQKHSSQAIGFSTTNP+IR+DTLSHQL YPQKPLF
Sbjct: 721  SFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLF 780

Query: 1422 RTMTTDCLGKPEYPLGHNRVL---PKEEFYNGQNAIVAVNVHMGYNQEDSLVMNRASLQR 1252
            RTM +DCLGKP+  LG N++    PK EFYNGQNAIVAVNVH+GYNQEDSLVMNRASLQR
Sbjct: 781  RTMASDCLGKPDNSLGQNKISKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQR 840

Query: 1251 GMFRSEHIRXXXXXXXXXXXXXXXXXXEDVVMFGKIQSKIGRVDSLDDDGFPYVGANLQS 1072
            GMFRSEHIR                  ED+V F K+QSKIGRVDSLDDDGFPYVGANLQS
Sbjct: 841  GMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQS 900

Query: 1071 GDIIIGRCAESGADHSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSS 892
            GDIIIG+ AESGAD+SVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSS
Sbjct: 901  GDIIIGKGAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSS 960

Query: 891  MHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLR 712
            MHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGG+LR
Sbjct: 961  MHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGILR 1020

Query: 711  HATPFSTPSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDK 532
             ATPFSTPSV+AIT+QLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDK
Sbjct: 1021 QATPFSTPSVDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDK 1080

Query: 531  VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHI 352
            VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHI
Sbjct: 1081 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHI 1140

Query: 351  CSKCKSVANVILRPVSGGRKIRGPYCRFCESADEIVVANVPYGAKLLCQELFSMGINLKF 172
            CSKCK+VANVILRPVSGGRKIRGPYCR CESAD+IVVA+VPYGAKLLCQELFSMGINLKF
Sbjct: 1141 CSKCKNVANVILRPVSGGRKIRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKF 1200

Query: 171  DTELC 157
            +T+LC
Sbjct: 1201 ETQLC 1205


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1775 bits (4597), Expect = 0.0
 Identities = 870/1158 (75%), Positives = 989/1158 (85%), Gaps = 2/1158 (0%)
 Frame = -2

Query: 3624 LEELGENTVRNFCKKASSKFFEEYGLVSHQINSYNQFLSNGLQNTFDSFGDLTVTPGFDP 3445
            L ++GE  +++FC KA++ FF EYGL+SHQINSYN F++NG+Q  FDSFG+L V PG+DP
Sbjct: 51   LTDIGEAKLKDFCNKAATLFFNEYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDP 110

Query: 3444 SKKGDSEHYRYASVKFGKVTLDPPKFWCGEGNTQEFKMLPRHARLQRMTYSSKMKVSVNV 3265
            SKKG++E +RYASVKFGKV L+ P FW G     E KMLPRHARLQ MTYSSKMKV+V+V
Sbjct: 111  SKKGENE-WRYASVKFGKVALEKPTFWSG---ADEHKMLPRHARLQNMTYSSKMKVNVSV 166

Query: 3264 EVYVPKKVRSDKFKTGKEELIDREILNQDNREIIIGRLPVMVKSDLCWMKGAEKGDCEFD 3085
            EVY  K VRSDKFKTGK++ +D+E+LN DNR I IG LPVMVKSDLCWMK AEKGDC+FD
Sbjct: 167  EVYTRKVVRSDKFKTGKDQYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDCDFD 226

Query: 3084 HGGYFLIKGAEKIFIAQEQLYIKRLWVLNTPCWTVAHKSQMKRNRLVIKLVGNSRSEEIN 2905
            HGGYFLIKGAEK+FIAQEQ+ +KRLW+ N   WTV++KS++KRNRL+++LVG S  E++ 
Sbjct: 227  HGGYFLIKGAEKVFIAQEQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALEDVK 286

Query: 2904 NGEKVLTVYFLSVEIPVWILFFALGVSSDKEIVDLIDYGSGDARIHNILFASIRDADEKC 2725
              +K LTVYFLS EIP+WILFFALGV+SDKE++DLI YGS DARI NI FASI DADEK 
Sbjct: 287  AEKKCLTVYFLSTEIPLWILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASIHDADEKT 346

Query: 2724 EGFRMGKTALYYMEEHVKGVQFPPPESIDDCLNMYLFPNIGGLSRKARYLAYMVKVLLLA 2545
            EGFR GK AL Y+   ++G +FPP E+ +D   +YLFP +  L +KAR+L YMVK LL A
Sbjct: 347  EGFRRGKEALEYVVRQIRGTRFPPGEN-EDFFLLYLFPTLHSLRQKARFLGYMVKCLLQA 405

Query: 2544 YTGRRKCDNRDDFRNKRLDLAGELLDRELKVHIAHARKRMAKALQRDLYGDREVRPIEHY 2365
            Y G+RKC+N D FRNKR +LA ELL+RELKVHIAHAR+RMAKALQ+DLYGDR+VRPIEHY
Sbjct: 406  YNGQRKCNNWDSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHY 465

Query: 2364 LDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGK 2185
            LDASI+TNGL RAFSTGAW+HPYKRMERISGVVA LGR NPLQTM +LR+TR  VQYTGK
Sbjct: 466  LDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYHVQYTGK 525

Query: 2184 VGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTNVTESLLPQLFDCGMEELVD 2005
            VGDAR+PHPSHWG+VCFLSTPDGENCGLVKNLA TGLVS N+ E L+ +L   GME++ +
Sbjct: 526  VGDARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILEPLIDKLIARGMEKVPE 585

Query: 2004 DTTTSLSKNDKVFLNGDWVGVCQDSISFVAELRSKRRKNELPHQVEIKRDQLQQEVRIYS 1825
            D+ + L + DKVFLNG+WVGVC+DS  FVAELR  RR+ +LP QVEIKRD+ QQEVRI+S
Sbjct: 586  DSHSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFS 645

Query: 1824 DAGRILRPLLVVSNLLKIKGSKAEH-SFQSLLENGVIELVGPXXXXXXCTAWGVQYLF-G 1651
            DAGRILRPLLVV NL KI+  K  + +FQSLL+ G+IE VG        TAWG+++L  G
Sbjct: 646  DAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSG 705

Query: 1650 KEGKTSVKYTHCELDMSFLLGLSCSLDPFANHDHARRVLYQSQKHSSQAIGFSTTNPDIR 1471
             +GK S+KYTHCELDMSFLLGLSC + PFANHDHARRVLYQ+QKHS QAIGF TTNP+IR
Sbjct: 706  VDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPNIR 765

Query: 1470 IDTLSHQLFYPQKPLFRTMTTDCLGKPEYPLGHNRVLPKEEFYNGQNAIVAVNVHMGYNQ 1291
            +DTLSHQL+YPQ+PLFRT+T+DCLGKP    GHN ++PK E YNGQNAIVAVNVH+GYNQ
Sbjct: 766  VDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQ 825

Query: 1290 EDSLVMNRASLQRGMFRSEHIRXXXXXXXXXXXXXXXXXXEDVVMFGKIQSKIGRVDSLD 1111
            EDSLVMNRASL+RGMFRSEHIR                  +D V FGKI SKIGRVDSLD
Sbjct: 826  EDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRVDSLD 885

Query: 1110 DDGFPYVGANLQSGDIIIGRCAESGADHSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLR 931
            DDGFP++GANLQSGDI+IGRCAESG DHS+KLKHTERG VQKVVLSSNDEGKNFAVVSLR
Sbjct: 886  DDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLR 945

Query: 930  QVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEA 751
            QVRSP LGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPH+FPSRQTPGQLLEA
Sbjct: 946  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEA 1005

Query: 750  ALGKGIACGGLLRHATPFSTPSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 571
            ALGKGIACGG +++ATPFST SVEAIT+QLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP
Sbjct: 1006 ALGKGIACGGSMKYATPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGP 1065

Query: 570  TFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYE 391
            TFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANL+E
Sbjct: 1066 TFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHE 1125

Query: 390  RLFTLSDSSQIHICSKCKSVANVILRPVSGGRKIRGPYCRFCESADEIVVANVPYGAKLL 211
            RLFTLSDSSQ+HIC KCK+VANVI R V GGRKIRGPYCR CES DEIV  NVPYGAKLL
Sbjct: 1126 RLFTLSDSSQMHICQKCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYGAKLL 1185

Query: 210  CQELFSMGINLKFDTELC 157
            CQELFSMGI+LKF+T LC
Sbjct: 1186 CQELFSMGISLKFETRLC 1203


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1755 bits (4546), Expect = 0.0
 Identities = 852/1161 (73%), Positives = 981/1161 (84%), Gaps = 5/1161 (0%)
 Frame = -2

Query: 3624 LEELGENTVRNFCKKASSKFFEEYGLVSHQINSYNQFLSNGLQNTFDSFGDLTVTPGFDP 3445
            + +LGE  +++FCKK+S  FF +YGL+SHQINSYN F+ NG+Q  FD FGD+ V PG+DP
Sbjct: 40   IHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDP 99

Query: 3444 SKKGDSEHYRYASVKFGKVTLDPPKFWCGEGNTQEFKMLPRHARLQRMTYSSKMKVSVNV 3265
            SKKGD E +RYA+VKFGKVTLD PKFW G  + +E+ MLPRHARLQ MTYSS+MK+++++
Sbjct: 100  SKKGDGE-WRYATVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISL 158

Query: 3264 EVYVPKKVRSDKFKTGKEELIDREILN--QDNREIIIGRLPVMVKSDLCWMKGAEKGDCE 3091
            E+Y  K V SDKFKTGK++ +D+E +    DNR++ IGRLPVMV SDLCWMK  +K DCE
Sbjct: 159  EIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRDCE 218

Query: 3090 FDHGGYFLIKGAEKIFIAQEQLYIKRLWVLNTPCWTVAHKSQMKRNRLVIKLVGNSRSEE 2911
            FD GGYFLIKGAEKIFIAQEQ+ ++RLW+ N   WTVA++S++KRNRL+I+LV NS+SE+
Sbjct: 219  FDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSED 278

Query: 2910 INNGEKVLTVYFLSVEIPVWILFFALGVSSDKEIVDLIDYGSGDARIHNILFASIR--DA 2737
            + + EKVL VYFLS E+PVWILFFALGVSSDKEIVDLIDYG  D  + NILFAS+R  D 
Sbjct: 279  LKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDN 338

Query: 2736 DEKCEGFRMGKTALYYMEEHVKGVQFPPPESIDDCLNMYLFPNIGGLSRKARYLAYMVKV 2557
            D+K + FR GK AL +++  ++   FPP + I+DCLN+YLF ++ G  +K  +L YMVK 
Sbjct: 339  DDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKC 398

Query: 2556 LLLAYTGRRKCDNRDDFRNKRLDLAGELLDRELKVHIAHARKRMAKALQRDLYGDREVRP 2377
            LL AYTGRRKCDNRDDFRNKR +LA ELL+RELKVHIAHAR+RM KALQRDLYGDR+V P
Sbjct: 399  LLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGDRQVHP 458

Query: 2376 IEHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQVQ 2197
            IEHYLDASIITNGL RAFSTGAW H +KRMERISGVVATLGR NPLQTMAELRRTRQQV 
Sbjct: 459  IEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRTRQQVA 518

Query: 2196 YTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTNVTESLLPQLFDCGME 2017
            YTGKVGDARYPHPSHWG+VCFLSTPDGENCGL+KNL+ TGLVS N  +S+ P LF CGME
Sbjct: 519  YTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTKKSITPTLFRCGME 578

Query: 2016 ELVDDTTTSLSKNDKVFLNGDWVGVCQDSISFVAELRSKRRKNELPHQVEIKRDQLQQEV 1837
             LVD+T+TS     ++FL+G+WVGVC+DS+SFV  +R KRR+N   HQVE+KRD+  +EV
Sbjct: 579  NLVDNTSTSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDEQLKEV 638

Query: 1836 RIYSDAGRILRPLLVVSNLLKIKGSKAE-HSFQSLLENGVIELVGPXXXXXXCTAWGVQY 1660
            RI+SDAGRILRPLLVV NL +I  SK E ++FQSLL+ G+IEL+G         AW +++
Sbjct: 639  RIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVAWSIKH 698

Query: 1659 LFGKEGKTSVKYTHCELDMSFLLGLSCSLDPFANHDHARRVLYQSQKHSSQAIGFSTTNP 1480
            L   EG T  KY+HCELDMSFLLGLSC L PFANHDHARR L+QSQKHS+QAIGFS TN 
Sbjct: 699  LMEDEGTT--KYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIGFSPTNS 756

Query: 1479 DIRIDTLSHQLFYPQKPLFRTMTTDCLGKPEYPLGHNRVLPKEEFYNGQNAIVAVNVHMG 1300
            + R+DTLSHQL YPQ+PLFRTMT DCLG P Y   H  +LPK EFYNGQNAIVAVNVH+G
Sbjct: 757  NFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVAVNVHLG 816

Query: 1299 YNQEDSLVMNRASLQRGMFRSEHIRXXXXXXXXXXXXXXXXXXEDVVMFGKIQSKIGRVD 1120
            YNQEDSLVMNRASL+RGMFRSEHIR                  +D + FGK QSKIGRVD
Sbjct: 817  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQSKIGRVD 876

Query: 1119 SLDDDGFPYVGANLQSGDIIIGRCAESGADHSVKLKHTERGYVQKVVLSSNDEGKNFAVV 940
            SLDDDGFPY+GANLQSGDI+IGRCAESGADHS+KLKHTE+G VQKVVLSSND+GKN+AVV
Sbjct: 877  SLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDGKNYAVV 936

Query: 939  SLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQL 760
            SLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQL
Sbjct: 937  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 996

Query: 759  LEAALGKGIACGGLLRHATPFSTPSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIF 580
            LEAALGKGIA GG L++ATPFSTPSV+AITDQLHRAGFSRWG+ERVYNGRTGEM+RSLIF
Sbjct: 997  LEAALGKGIAAGGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYNGRTGEMMRSLIF 1056

Query: 579  MGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN 400
            MGPTFYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN
Sbjct: 1057 MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASAN 1116

Query: 399  LYERLFTLSDSSQIHICSKCKSVANVILRPVSGGRKIRGPYCRFCESADEIVVANVPYGA 220
            L+ERLFTLSDSSQ+H+C KCK+VA+VI R V+GGRK+RGPYCR CES D+IV  NVPYGA
Sbjct: 1117 LHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKMRGPYCRVCESFDDIVRVNVPYGA 1176

Query: 219  KLLCQELFSMGINLKFDTELC 157
            KLLCQELFSMGINLKF+T+LC
Sbjct: 1177 KLLCQELFSMGINLKFETQLC 1197