BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00008912
         (1310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago t...   619   e-175
ref|XP_003523387.1| PREDICTED: RNA polymerase sigma factor rpoD-...   596   e-168
ref|XP_003526693.1| PREDICTED: RNA polymerase sigma factor rpoD-...   593   e-167
dbj|BAM05478.1| sigma-like factor 5B [Glycine max]                    591   e-166
ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor rpoD-...   535   e-150

>ref|XP_003602198.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
            gi|355491246|gb|AES72449.1| RNA polymerase sigma factor
            rpoD [Medicago truncatula]
          Length = 514

 Score =  619 bits (1597), Expect = e-175
 Identities = 314/405 (77%), Positives = 353/405 (87%)
 Frame = +3

Query: 3    SDTCDADYIDRKIKRVSRRGKKIGDGNKEEELNNDRVIRSRKTKAKRLNLDERIELQKNK 182
            +D CDADYI+RKIKRVSRRGKKIGD +KE+  N+DRV+R++KTKAKR+NLDERI L+ ++
Sbjct: 111  TDICDADYIERKIKRVSRRGKKIGDVSKEDS-NSDRVVRNQKTKAKRMNLDERIALKTSE 169

Query: 183  EGEEVIPTRRKINVKNRIGKIEELVREYSILTDFGSLDWKKMKIPPVLPASEHALLFKLM 362
              E+VIPTR+K N ++R+ KI+EL+REYS+  D  SLDWKKMKIPPVLP+SEHA LFKLM
Sbjct: 170  NSEDVIPTRKKRNPRSRVEKIDELLREYSVPADLVSLDWKKMKIPPVLPSSEHAFLFKLM 229

Query: 363  QPLKALCQLKEDLQKELAREPTEDEIAEATNMRVAQVKKAIEVGQAARNKLIKHNLRLVL 542
            QP+KAL Q+K+DLQKEL REPTEDEIA+ATNM   QVKKAIEVG+AARNKLIKHNLRLVL
Sbjct: 230  QPMKALLQVKDDLQKELEREPTEDEIADATNMHTTQVKKAIEVGRAARNKLIKHNLRLVL 289

Query: 543  FVINRHFPDFANGPRFQDLCQAGVKGLIIAIDRFEPNRRFRLSTYSLFWIRHAIIRSLTL 722
            FVINR+F DFAN PRFQDLCQAGVKGLI +IDRFEPNRRFRLSTYSLFWIRHAIIRS+TL
Sbjct: 290  FVINRYFSDFANSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYSLFWIRHAIIRSMTL 349

Query: 723  SSFTRVPFGLESVRAEIQRAKTELTFELQRSPTMEEIIERVQISPERYHDVLKASKPLLS 902
            +SF+RVPFGLESVRAEI+RAK EL+F+LQRSPT EEIIE+V +SPERY DV+KASKPLLS
Sbjct: 350  ASFSRVPFGLESVRAEIRRAKIELSFQLQRSPTEEEIIEKVHVSPERYRDVMKASKPLLS 409

Query: 903  LHSRHMTTQEEFINXXXXXXXXXXXNRRQPAXXXXXXXXXXXXXKPKENLVIRQRFGLDG 1082
            LHSRH+TTQEEFIN           NRRQPA             KPKENLVIRQRFGLDG
Sbjct: 410  LHSRHLTTQEEFINGVVDDGGVDGDNRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDG 469

Query: 1083 KGDRTLGEIAANLNISREMVRKHEVKALMKLKHSARLDYLRRYVV 1217
            KGDRTLGEIA+NLNISREMVRKHEVKALMKLKHSARLDYLRRYVV
Sbjct: 470  KGDRTLGEIASNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV 514


>ref|XP_003523387.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 509

 Score =  596 bits (1536), Expect = e-168
 Identities = 306/407 (75%), Positives = 345/407 (84%), Gaps = 2/407 (0%)
 Frame = +3

Query: 3    SDTCDADYIDRKIKRVSRRGKKIGDGNKEEELNNDRVIR--SRKTKAKRLNLDERIELQK 176
            S T +A+ ID KIKRVSRRGKK+ D ++E+EL  DRV+R  ++  KAKRL LD+RI L+ 
Sbjct: 103  SHTGNAECIDDKIKRVSRRGKKVVDESEEKELKGDRVVRRQNKNKKAKRLTLDQRISLKN 162

Query: 177  NKEGEEVIPTRRKINVKNRIGKIEELVREYSILTDFGSLDWKKMKIPPVLPASEHALLFK 356
            NK G+EVIPTR+K N +NRI KIEEL+REYS+  DF S+DWK+M+IPPVL +SEHA LFK
Sbjct: 163  NKRGDEVIPTRKKRNFRNRIEKIEELIREYSVSNDFISMDWKRMRIPPVLSSSEHAWLFK 222

Query: 357  LMQPLKALCQLKEDLQKELAREPTEDEIAEATNMRVAQVKKAIEVGQAARNKLIKHNLRL 536
            LMQP+KAL Q+KEDLQKELAREP + E+A+ATNM + QVKKAI+VGQAARNKLIKHNLRL
Sbjct: 223  LMQPMKALLQVKEDLQKELAREPADGELADATNMSITQVKKAIDVGQAARNKLIKHNLRL 282

Query: 537  VLFVINRHFPDFANGPRFQDLCQAGVKGLIIAIDRFEPNRRFRLSTYSLFWIRHAIIRSL 716
            VLFVIN++F DFA+GPRFQDLCQAGVKGLI AIDRFEPNRRFRLSTYSLFWIRHAIIRS+
Sbjct: 283  VLFVINKYFTDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSM 342

Query: 717  TLSSFTRVPFGLESVRAEIQRAKTELTFELQRSPTMEEIIERVQISPERYHDVLKASKPL 896
            TLSSF RVPFGLESVRAEIQ+AKTELTF+LQRSPT EEIIERV ISPERYHD++KASK +
Sbjct: 343  TLSSFIRVPFGLESVRAEIQKAKTELTFKLQRSPTEEEIIERVHISPERYHDIIKASKSI 402

Query: 897  LSLHSRHMTTQEEFINXXXXXXXXXXXNRRQPAXXXXXXXXXXXXXKPKENLVIRQRFGL 1076
            LSL+SRH TTQEEFIN           NR+QPA             KPKE+LVIRQRFGL
Sbjct: 403  LSLNSRHTTTQEEFINGIVDDDGVNGDNRKQPALLRLALDDVLDSLKPKESLVIRQRFGL 462

Query: 1077 DGKGDRTLGEIAANLNISREMVRKHEVKALMKLKHSARLDYLRRYVV 1217
            DGKGDRTLGEIA NLNISREMVRKHEVKALMKL HSARLDYLRRYVV
Sbjct: 463  DGKGDRTLGEIAGNLNISREMVRKHEVKALMKLNHSARLDYLRRYVV 509


>ref|XP_003526693.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 507

 Score =  593 bits (1530), Expect = e-167
 Identities = 304/403 (75%), Positives = 344/403 (85%), Gaps = 2/403 (0%)
 Frame = +3

Query: 15   DADYIDRKIKRVSRRGKKIGDGNKEEELNNDRVIRS--RKTKAKRLNLDERIELQKNKEG 188
            +A+ ID KIKRVSRRGKK+ D ++E+EL  D V+R+  +  K KRLNLD+RI L+ NK G
Sbjct: 105  NAECIDGKIKRVSRRGKKVVDESEEKELKGDWVVRNQNKNKKPKRLNLDQRISLKNNKSG 164

Query: 189  EEVIPTRRKINVKNRIGKIEELVREYSILTDFGSLDWKKMKIPPVLPASEHALLFKLMQP 368
            +EVIPTR+K NV N+I KIEEL+REYS+ TDF S+DWK+M+IPPVL +SEHA LFKLMQP
Sbjct: 165  DEVIPTRKKRNVGNKIEKIEELIREYSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQP 224

Query: 369  LKALCQLKEDLQKELAREPTEDEIAEATNMRVAQVKKAIEVGQAARNKLIKHNLRLVLFV 548
            +KAL Q+KEDLQ+EL REP + E+A+ATNM + QV+KAI+VGQAARNKLIKHNLRLVLFV
Sbjct: 225  MKALLQVKEDLQQELTREPADGELADATNMSITQVRKAIDVGQAARNKLIKHNLRLVLFV 284

Query: 549  INRHFPDFANGPRFQDLCQAGVKGLIIAIDRFEPNRRFRLSTYSLFWIRHAIIRSLTLSS 728
            IN++F DFA+GPRFQDLCQAGVKGLI AIDRFEPNRRFRLSTYSLFWIRHAIIRS+TLS+
Sbjct: 285  INKYFTDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSN 344

Query: 729  FTRVPFGLESVRAEIQRAKTELTFELQRSPTMEEIIERVQISPERYHDVLKASKPLLSLH 908
            FTRVPFGLESVRAEIQ+AKTELTFELQRSPT EEIIERV ISPERYHDV+KASK +LSL+
Sbjct: 345  FTRVPFGLESVRAEIQKAKTELTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLN 404

Query: 909  SRHMTTQEEFINXXXXXXXXXXXNRRQPAXXXXXXXXXXXXXKPKENLVIRQRFGLDGKG 1088
            SRH TTQEEFIN           NR+QPA             KPKE+LVIRQRFGLDGKG
Sbjct: 405  SRHTTTQEEFINGIVDDDGVNGDNRKQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKG 464

Query: 1089 DRTLGEIAANLNISREMVRKHEVKALMKLKHSARLDYLRRYVV 1217
            DRTLGEIA NLNISREMVRKHEVKALMKLKHSARLDYLRRYVV
Sbjct: 465  DRTLGEIAGNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV 507


>dbj|BAM05478.1| sigma-like factor 5B [Glycine max]
          Length = 507

 Score =  591 bits (1524), Expect = e-166
 Identities = 303/403 (75%), Positives = 343/403 (85%), Gaps = 2/403 (0%)
 Frame = +3

Query: 15   DADYIDRKIKRVSRRGKKIGDGNKEEELNNDRVIRS--RKTKAKRLNLDERIELQKNKEG 188
            +A+ ID KIKRVSRRGKK+ D ++E+EL  D V+R+  +  K KRLNLD+RI L+ NK G
Sbjct: 105  NAECIDGKIKRVSRRGKKVVDESEEKELKGDWVVRNQNKNKKPKRLNLDQRISLKNNKSG 164

Query: 189  EEVIPTRRKINVKNRIGKIEELVREYSILTDFGSLDWKKMKIPPVLPASEHALLFKLMQP 368
            +EVIPTR+K NV N+I KIEEL+REYS+ TDF S+DWK+M+IPPVL +SEHA LFKLMQP
Sbjct: 165  DEVIPTRKKRNVGNKIEKIEELIREYSVSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQP 224

Query: 369  LKALCQLKEDLQKELAREPTEDEIAEATNMRVAQVKKAIEVGQAARNKLIKHNLRLVLFV 548
            +KAL Q+KEDLQ+EL REP + E+A+ATNM + QV+KAI+VGQAARNKLIKHNLRLVLFV
Sbjct: 225  MKALLQVKEDLQQELTREPADGELADATNMSITQVRKAIDVGQAARNKLIKHNLRLVLFV 284

Query: 549  INRHFPDFANGPRFQDLCQAGVKGLIIAIDRFEPNRRFRLSTYSLFWIRHAIIRSLTLSS 728
            IN++F DFA+GPRFQDLCQAGVKGLI AIDRFEPNRRFRLSTYSLFWIRHAIIRS+TLS+
Sbjct: 285  INKYFTDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSN 344

Query: 729  FTRVPFGLESVRAEIQRAKTELTFELQRSPTMEEIIERVQISPERYHDVLKASKPLLSLH 908
            FTRVPFGLESVRAEIQ+AKTELTFELQRSPT EEIIERV ISPERYHDV+KASK +LSL+
Sbjct: 345  FTRVPFGLESVRAEIQKAKTELTFELQRSPTEEEIIERVHISPERYHDVIKASKSILSLN 404

Query: 909  SRHMTTQEEFINXXXXXXXXXXXNRRQPAXXXXXXXXXXXXXKPKENLVIRQRFGLDGKG 1088
            SRH TTQEEFIN           NR+QPA             KPKE+LVIR RFGLDGKG
Sbjct: 405  SRHTTTQEEFINGIVDDDGVNGDNRKQPALLRLALDDVLDSLKPKESLVIRXRFGLDGKG 464

Query: 1089 DRTLGEIAANLNISREMVRKHEVKALMKLKHSARLDYLRRYVV 1217
            DRTLGEIA NLNISREMVRKHEVKALMKLKHSARLDYLRRYVV
Sbjct: 465  DRTLGEIAGNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV 507


>ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 512

 Score =  535 bits (1379), Expect = e-150
 Identities = 276/405 (68%), Positives = 328/405 (80%)
 Frame = +3

Query: 3    SDTCDADYIDRKIKRVSRRGKKIGDGNKEEELNNDRVIRSRKTKAKRLNLDERIELQKNK 182
            SDTC+ + ID KI+RV RR KK+ +  + ++ N D V+R++  KAKRL+LD+RI L+ N 
Sbjct: 111  SDTCNVEDIDSKIERVLRRRKKVSE--ERDDGNCDNVVRNQNKKAKRLSLDKRIALKNNA 168

Query: 183  EGEEVIPTRRKINVKNRIGKIEELVREYSILTDFGSLDWKKMKIPPVLPASEHALLFKLM 362
            + E +  T++K NVKNR+  I+ L+R+YS  TD  S+DWKKMKIPPVLP+SEHA LFKLM
Sbjct: 169  KEEVIDQTQKKRNVKNRVQNIDVLIRDYSASTDLVSMDWKKMKIPPVLPSSEHAWLFKLM 228

Query: 363  QPLKALCQLKEDLQKELAREPTEDEIAEATNMRVAQVKKAIEVGQAARNKLIKHNLRLVL 542
            QP+KAL Q KEDL KE+ +E T  E+A+ATNM + QV+KAIEVG+AARNKLIKHNLRLVL
Sbjct: 229  QPMKALLQAKEDL-KEVDKEITGGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVL 287

Query: 543  FVINRHFPDFANGPRFQDLCQAGVKGLIIAIDRFEPNRRFRLSTYSLFWIRHAIIRSLTL 722
            FVIN++F DFA+GPRFQDLCQAGVKGLI AIDRFEP RR +LSTYSLFWIRH+I+RS+TL
Sbjct: 288  FVINKYFQDFASGPRFQDLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITL 347

Query: 723  SSFTRVPFGLESVRAEIQRAKTELTFELQRSPTMEEIIERVQISPERYHDVLKASKPLLS 902
            SSFTRVPFGLE VR +IQR K +LTFELQRSPT EE++ER+ IS ERYH+V+KASKP+LS
Sbjct: 348  SSFTRVPFGLERVRVDIQRTKLKLTFELQRSPTEEELVERIGISLERYHEVMKASKPILS 407

Query: 903  LHSRHMTTQEEFINXXXXXXXXXXXNRRQPAXXXXXXXXXXXXXKPKENLVIRQRFGLDG 1082
            LHSRH+TTQEE+IN           NRRQ A             KPKE+LVIRQR+GLDG
Sbjct: 408  LHSRHITTQEEYINGITDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDG 467

Query: 1083 KGDRTLGEIAANLNISREMVRKHEVKALMKLKHSARLDYLRRYVV 1217
            KGDRTLGEIA NLNISRE+VRKHEVKALMKLKH ARLDYLRRYVV
Sbjct: 468  KGDRTLGEIAGNLNISREIVRKHEVKALMKLKHPARLDYLRRYVV 512