BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00008570
         (4054 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  2113   0.0  
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  2112   0.0  
ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago trunc...  2015   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1785   0.0  
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...  1777   0.0  

>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
          Length = 1204

 Score = 2113 bits (5474), Expect = 0.0
 Identities = 1041/1197 (86%), Positives = 1100/1197 (91%), Gaps = 4/1197 (0%)
 Frame = -3

Query: 3896 DLEVTQVSIGGFGSEVKANDLVTFLEDKFGLVDRCRLKTSWTPPESYPEFSIIDTAQIKK 3717
            D  VTQ+SIGGFGSEVKA+DLV +LEDK GLV RCRLKTSWTPPESYPEF+IIDTA I++
Sbjct: 9    DSVVTQISIGGFGSEVKASDLVNYLEDKIGLVYRCRLKTSWTPPESYPEFNIIDTANIRR 68

Query: 3716 TDDYKKVEPHAFVHFASAESATDAFNASGCCDLFWKSQALKIIRGPQNPNLLNQRRRDTA 3537
            TD+YKKVEPHAFVHFAS ES T A NASGCCDLF K+Q LK+  GP+NP  LNQRRR T 
Sbjct: 69   TDNYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPENPYFLNQRRRTTT 128

Query: 3536 PFKMSDVLVEIGTLVSPEEFYVAWRGPDKGVNFLVDPFDRMCKLCFNRDVAFSFKGIEKK 3357
            PFKMSDVLVEIGTLVSP EF+V+WRGPDKGV FLVDPFD MC+ CF+RD AFSFKGIEKK
Sbjct: 129  PFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFKGIEKK 188

Query: 3356 AVIKCDFKVGFLVRDIYEIRRYNDTSYHVVLLQLASSPLVWYRTADDDIEEPVTYDLLDD 3177
            AVIKCDF+VGFLVRDI EI+RYNDTSY VVLL LASSP VWYRTADDDIEE V +DLLDD
Sbjct: 189  AVIKCDFQVGFLVRDINEIKRYNDTSYLVVLLHLASSPWVWYRTADDDIEESVPFDLLDD 248

Query: 3176 DDPWIRTTDFTPSGAIGRCNFYRISIPPRYGAKLTKAMGYLGGQRVQ--EVPLKRPLRIR 3003
            DDPWIRTTDFTPSGAIGRCNFYRISIPPR+GAKL KAM YL GQRVQ  E+ LK+ LR  
Sbjct: 249  DDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQMQELALKQTLRTL 308

Query: 3002 DEPGFGVSMSDAFFHIHFQKGITFDIMFLINAIVHKGIFNQHSLSDRFFELLRNQPKEVN 2823
            +EP FGV MSDAFF+IHFQK I FDIMFL+NAIVHKGIFNQH LSDRFFELL+NQPKE+N
Sbjct: 309  NEPDFGVPMSDAFFYIHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLKNQPKELN 368

Query: 2822 VAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQLDDIVEVRRLVITPTKAYCV 2643
            VAALKHLCSYKRPVFDA KRLK VQEWLLRNPKLYQ SKQLDDIVEVRRLVITP+KAYC+
Sbjct: 369  VAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVITPSKAYCI 428

Query: 2642 PPEVELSNRVLRRFREVSDHFLRVTFMDEGMQTINVNALNYYVAPIVREITSNSFPQKTK 2463
            PPEVELSNRVLR+FREVSD FLRVTFMDEGMQTINVNALNYYVAPIV+EITSNSF Q+TK
Sbjct: 429  PPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFSQRTK 488

Query: 2462 IYKRVKTILDEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEGSDISCDAIRNWMGKFNHKN 2283
            IYKRVKTIL++GFYFCGRKYSFLAFSSNQLRDRSAWFFAE   I CD IRNWMGKFN +N
Sbjct: 489  IYKRVKTILEQGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDK-IRCDDIRNWMGKFNQRN 547

Query: 2282 VAKCAARMGQCFSSTYATVEVAANEVNRMLPDVTRNNYVFSDGIGIITPDLAVEVAEKLK 2103
            VAKCAARMGQCFSSTYATVEVAANEVN MLPDV RNNY+FSDGIG+IT DLA EVAEKLK
Sbjct: 548  VAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLAREVAEKLK 607

Query: 2102 LDNVPSAYQIRFAGFKGVVASWPAKGDGFRLQLRPSMNKFQSTHSTLEICSWTRFQPGFL 1923
            LDNVPSAYQIR+AGFKGVVASWPAKGDG RL LRPSMNKFQSTH+ LEIC+WTRFQPGFL
Sbjct: 608  LDNVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICAWTRFQPGFL 667

Query: 1922 NRQIITLLSALDVSDEIFWKMQEVMISRLNQMLIDVDVAFDVLTKSCAEHGNAAAIMLSC 1743
            NRQIITLLSAL V DE+FW+MQE M+ +LNQML+D D+AFDVLTKSCAEHGNAAAIMLSC
Sbjct: 668  NRQIITLLSALGVPDEVFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHGNAAAIMLSC 727

Query: 1742 GFSPQTEPHLRGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVST 1563
            GFSP TEPHLRGMLTS RAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVST
Sbjct: 728  GFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVST 787

Query: 1562 PSLENCFSKHGSRFSETKNLQVVKGYVVIAKNPCLHPGDVRVLEAVDAPDLHHLYDCLVF 1383
            PSLENCFSKHGSRFSETKNL VVKG+V+IAKNPCLHPGDVRVLEAVDAPDLHHL DCLVF
Sbjct: 788  PSLENCFSKHGSRFSETKNLHVVKGFVIIAKNPCLHPGDVRVLEAVDAPDLHHLNDCLVF 847

Query: 1382 PQKGDRPHTNEASGSDLDGDLYFVTWEENLIPPSKRSWIPMEYTAQESKLQTRQVTIRDI 1203
            PQKGDRPHTNEASGSDLDGDLYFVTW+ENLIPPSKRSWIPMEY  QESKL+TRQV  RDI
Sbjct: 848  PQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLKTRQVMTRDI 907

Query: 1202 IEFFAKNMVNEHLGAICNAHVVHADSSDYGAMDEKCITLAELAATAVDFPKTGKLVTMPS 1023
            IEFF +NMVNEHLGAICNAHVVHADSSDYGA+DEKCI LAELAATAVDFPKTGKLVTMP 
Sbjct: 908  IEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPP 967

Query: 1022 HLKPKLYPDFMGKEQHQSYKSTKILGRLYRRIKDAYDEDIDAPDLNNVGGDIPYDTDLEV 843
            HLKPKLYPDFMGKE+HQSY+S KILGRLYRRIKDAYDEDIDAP LN V GDIPYD DLEV
Sbjct: 968  HLKPKLYPDFMGKERHQSYRSKKILGRLYRRIKDAYDEDIDAPYLNFVTGDIPYDKDLEV 1027

Query: 842  PGSADFIADAWEQKCSYDGQLSALLGQYKVKREEEVVTGQIWSMPKYNSKKQGELKERLK 663
            PGSADFIADAWEQKCSYDGQLS LLGQYKVKREEEVVTGQIWSMPKYNS+KQGELKERLK
Sbjct: 1028 PGSADFIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLK 1087

Query: 662  HSYSALRKEFRQTFEKLNSDVGELSDEEKNLLYEQKASAWYQVTYNPKWVKKSRDLQIKS 483
            HSYSAL+KEFR TFEKLNSDVGELS+EEKNL YEQKASAWYQVTY+P+WVKKS DLQ KS
Sbjct: 1088 HSYSALKKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEWVKKSLDLQDKS 1147

Query: 482  PENQEPDSLGNMVMLSFPWIAVDYIARTKI--RHQGSGKIVSTKPVDSLAKYLSERL 318
             ENQE DSLG+ VMLSFPWIAVDY+ARTKI  RHQ  G   STKPVDSLAKYLSERL
Sbjct: 1148 SENQEADSLGSTVMLSFPWIAVDYLARTKIRQRHQRCGNFDSTKPVDSLAKYLSERL 1204


>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
          Length = 1204

 Score = 2112 bits (5471), Expect = 0.0
 Identities = 1043/1205 (86%), Positives = 1103/1205 (91%), Gaps = 11/1205 (0%)
 Frame = -3

Query: 3899 MDLE-------VTQVSIGGFGSEVKANDLVTFLEDKFGLVDRCRLKTSWTPPESYPEFSI 3741
            MDLE       VTQ+SIGGFGSEVKA+DL+ +LEDK GLV RCRLKTSWTPPESYPEF I
Sbjct: 1    MDLEGSEKGSVVTQISIGGFGSEVKASDLLNYLEDKIGLVYRCRLKTSWTPPESYPEFKI 60

Query: 3740 IDTAQIKKTDDYKKVEPHAFVHFASAESATDAFNASGCCDLFWKSQALKIIRGPQNPNLL 3561
            IDTA+I++T+DYKKVEPHAFVHFAS ES T A NASGCCDLF K+Q LK+  GP+NP  L
Sbjct: 61   IDTAKIRRTEDYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPKNPYFL 120

Query: 3560 NQRRRDTAPFKMSDVLVEIGTLVSPEEFYVAWRGPDKGVNFLVDPFDRMCKLCFNRDVAF 3381
            NQRRR T PFKMSDVLVEIGTLVSP EF+V+WRGPDKGV FLVDPFD MC+ CF+RD AF
Sbjct: 121  NQRRRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAF 180

Query: 3380 SFKGIEKKAVIKCDFKVGFLVRDIYEIRRYNDTSYHVVLLQLASSPLVWYRTADDDIEEP 3201
            SFKGI+KKAVIKCDF+VGFLVRDI EIRRYNDTSY VVLL LASSP VWYRTADDDIEE 
Sbjct: 181  SFKGIDKKAVIKCDFQVGFLVRDINEIRRYNDTSYLVVLLHLASSPWVWYRTADDDIEES 240

Query: 3200 VTYDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRYGAKLTKAMGYLGGQRVQ--EVP 3027
            V +DLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPR+GAKL KAM YL GQRVQ  E+P
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQIQELP 300

Query: 3026 LKRPLRIRDEPGFGVSMSDAFFHIHFQKGITFDIMFLINAIVHKGIFNQHSLSDRFFELL 2847
            LK+ LR ++EP FG+ MSDAFF++HFQK I FDIMFL+NAIVHKGIFNQH LSDRFFELL
Sbjct: 301  LKQTLRTQNEPDFGMPMSDAFFYVHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELL 360

Query: 2846 RNQPKEVNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQLDDIVEVRRLVI 2667
            RNQPKE+NVAALKHLCSYKRPVFDA KRLK VQEWLLRNPKLYQ SKQLDDIVEVRRLV+
Sbjct: 361  RNQPKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVV 420

Query: 2666 TPTKAYCVPPEVELSNRVLRRFREVSDHFLRVTFMDEGMQTINVNALNYYVAPIVREITS 2487
            TP+KAYC+PPEVELSNRVLR+FREVSD FLRVTFMDEGMQTINVNALNYYVAPIV+EITS
Sbjct: 421  TPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITS 480

Query: 2486 NSFPQKTKIYKRVKTILDEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEGSDISCDAIRNW 2307
            NSF QKTKIYKRVKTIL+EGFYFCGRKYSFLAFSSNQLRDRSAWFFAE   I CD IRNW
Sbjct: 481  NSFSQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDK-IRCDDIRNW 539

Query: 2306 MGKFNHKNVAKCAARMGQCFSSTYATVEVAANEVNRMLPDVTRNNYVFSDGIGIITPDLA 2127
            MGKFN +NVAKCAARMGQCFSSTYATVEVAANEVN MLPDV RNNY+FSDGIG+IT DLA
Sbjct: 540  MGKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLA 599

Query: 2126 VEVAEKLKLDNVPSAYQIRFAGFKGVVASWPAKGDGFRLQLRPSMNKFQSTHSTLEICSW 1947
             EVAEKLKLDNVPSAYQIR+AGFKGVVASWPAKGDG RL LRPSMNKFQSTH+ LEIC+W
Sbjct: 600  REVAEKLKLDNVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICAW 659

Query: 1946 TRFQPGFLNRQIITLLSALDVSDEIFWKMQEVMISRLNQMLIDVDVAFDVLTKSCAEHGN 1767
            TRFQPGFLNRQIITLLSAL V DEIFW+MQE M+ +LNQML+D D+AFDVLTKSCAEHGN
Sbjct: 660  TRFQPGFLNRQIITLLSALGVPDEIFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHGN 719

Query: 1766 AAAIMLSCGFSPQTEPHLRGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQG 1587
            AAAIMLSCGFSP TEPHLRGMLTS RAAQLWGLREKSRIFVSSGRWLMGVLDE GVLEQG
Sbjct: 720  AAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQG 779

Query: 1586 QCFVQVSTPSLENCFSKHGSRFSETKNLQVVKGYVVIAKNPCLHPGDVRVLEAVDAPDLH 1407
            QCFVQVSTPSLENCFSKHGSRFSETKNL VVKG+VVIAKNPCLHPGDVRVLEAVDAPDLH
Sbjct: 780  QCFVQVSTPSLENCFSKHGSRFSETKNLHVVKGFVVIAKNPCLHPGDVRVLEAVDAPDLH 839

Query: 1406 HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWEENLIPPSKRSWIPMEYTAQESKLQT 1227
            HL DCLVFPQKGDRPHTNEASGSDLDGDLYFVTW+ENLIPPSKRSWIPMEY  QESKL T
Sbjct: 840  HLNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLLT 899

Query: 1226 RQVTIRDIIEFFAKNMVNEHLGAICNAHVVHADSSDYGAMDEKCITLAELAATAVDFPKT 1047
            RQV  RDIIEFF +NMVNEHLGAICNAHVVHADSSDYGA+DEKCI LAELAATAVDFPKT
Sbjct: 900  RQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKT 959

Query: 1046 GKLVTMPSHLKPKLYPDFMGKEQHQSYKSTKILGRLYRRIKDAYDEDIDAPDLNNVGGDI 867
            GKLVTMP HLKPKLYPDFMGKE+HQSY+S KILGRLYR IKDAYDEDI+AP LN V GDI
Sbjct: 960  GKLVTMPPHLKPKLYPDFMGKERHQSYRSNKILGRLYRHIKDAYDEDIEAPYLNFVTGDI 1019

Query: 866  PYDTDLEVPGSADFIADAWEQKCSYDGQLSALLGQYKVKREEEVVTGQIWSMPKYNSKKQ 687
            PYD DLEVPGSADFIADAWEQKCSYDGQLS L+GQYKVKREEEVVTGQIWSMPKYNS+KQ
Sbjct: 1020 PYDKDLEVPGSADFIADAWEQKCSYDGQLSGLIGQYKVKREEEVVTGQIWSMPKYNSRKQ 1079

Query: 686  GELKERLKHSYSALRKEFRQTFEKLNSDVGELSDEEKNLLYEQKASAWYQVTYNPKWVKK 507
            GELKERLKHSYSAL+KEFR TFEKLNSDVGELS+EEKNLLYEQKASAWYQVTY+P+WVKK
Sbjct: 1080 GELKERLKHSYSALKKEFRYTFEKLNSDVGELSEEEKNLLYEQKASAWYQVTYHPEWVKK 1139

Query: 506  SRDLQIKSPENQEPDSLGNMVMLSFPWIAVDYIARTKI--RHQGSGKIVSTKPVDSLAKY 333
            S DLQ KS ENQE DSLG+ VMLSFPWIAVDY+ARTKI  RHQ SG   STKPVD LAKY
Sbjct: 1140 SLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTKIRQRHQRSGNFDSTKPVDYLAKY 1199

Query: 332  LSERL 318
            LSERL
Sbjct: 1200 LSERL 1204


>ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
            gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase
            [Medicago truncatula]
          Length = 1188

 Score = 2015 bits (5221), Expect = 0.0
 Identities = 981/1177 (83%), Positives = 1068/1177 (90%)
 Frame = -3

Query: 3848 KANDLVTFLEDKFGLVDRCRLKTSWTPPESYPEFSIIDTAQIKKTDDYKKVEPHAFVHFA 3669
            K +DLV++LE K G VDRCRLKTS TPPESYPEF++ DT QI+ TDDYKKV PHAFVHF 
Sbjct: 12   KTSDLVSYLESKIGYVDRCRLKTSCTPPESYPEFTMTDTKQIEITDDYKKVAPHAFVHFT 71

Query: 3668 SAESATDAFNASGCCDLFWKSQALKIIRGPQNPNLLNQRRRDTAPFKMSDVLVEIGTLVS 3489
              +SAT+A NA+G CDL    + LK+I GPQNPN LNQRRR  APFKMSDV+VEIGTLVS
Sbjct: 72   LPDSATEALNAAGRCDLILNGKVLKVISGPQNPNFLNQRRRTEAPFKMSDVIVEIGTLVS 131

Query: 3488 PEEFYVAWRGPDKGVNFLVDPFDRMCKLCFNRDVAFSFKGIEKKAVIKCDFKVGFLVRDI 3309
            P +F VAWRG DKGVNFLVDPFD++CK+CFNRD AFSFKGI K+AVIKCDFKVGFL+RDI
Sbjct: 132  PADFTVAWRGCDKGVNFLVDPFDKICKICFNRDTAFSFKGIGKQAVIKCDFKVGFLIRDI 191

Query: 3308 YEIRRYNDTSYHVVLLQLASSPLVWYRTADDDIEEPVTYDLLDDDDPWIRTTDFTPSGAI 3129
             EI+RY+DTS+ VVLL+LASSPLVWYRTADDDI+E VT DLLDDDDPWIRTTDFTPSGAI
Sbjct: 192  EEIQRYDDTSHLVVLLRLASSPLVWYRTADDDIDESVTIDLLDDDDPWIRTTDFTPSGAI 251

Query: 3128 GRCNFYRISIPPRYGAKLTKAMGYLGGQRVQEVPLKRPLRIRDEPGFGVSMSDAFFHIHF 2949
            GRCN+YRISIPPR+GAKL KA+ YL  QRV  +PLKRP +I++EP FGV MSDAFF+I  
Sbjct: 252  GRCNYYRISIPPRHGAKLNKALEYLRRQRVPRIPLKRPPKIQNEPDFGVPMSDAFFYIDS 311

Query: 2948 QKGITFDIMFLINAIVHKGIFNQHSLSDRFFELLRNQPKEVNVAALKHLCSYKRPVFDAA 2769
            QK I+FDIMFLINAIVH+GIFNQ+SLS++FFELL+NQPK+VNVAALKH+C+YK PVFDAA
Sbjct: 312  QKDISFDIMFLINAIVHRGIFNQYSLSNKFFELLKNQPKDVNVAALKHICTYKHPVFDAA 371

Query: 2768 KRLKTVQEWLLRNPKLYQSSKQLDDIVEVRRLVITPTKAYCVPPEVELSNRVLRRFREVS 2589
            KRL+ VQ+WLLRNPK YQ SKQ DD++EVRRLV+TPTKAYC+ PEVELSNRVLRRFREVS
Sbjct: 372  KRLEAVQKWLLRNPKFYQISKQSDDVMEVRRLVVTPTKAYCISPEVELSNRVLRRFREVS 431

Query: 2588 DHFLRVTFMDEGMQTINVNALNYYVAPIVREITSNSFPQKTKIYKRVKTILDEGFYFCGR 2409
            D FLRVTFMDEG QT+N  ALNYYVAPIV+EITSNSF QKT+IYKRVKTILD+GFYFCGR
Sbjct: 432  DRFLRVTFMDEGQQTLNNYALNYYVAPIVKEITSNSFQQKTRIYKRVKTILDDGFYFCGR 491

Query: 2408 KYSFLAFSSNQLRDRSAWFFAEGSDISCDAIRNWMGKFNHKNVAKCAARMGQCFSSTYAT 2229
            KYSFLAFSSNQLRDRSAWFFAE  DI+CD IRNWMG+FN KNVAKCAARMGQCFSSTYA+
Sbjct: 492  KYSFLAFSSNQLRDRSAWFFAEDKDITCDDIRNWMGRFNQKNVAKCAARMGQCFSSTYAS 551

Query: 2228 VEVAANEVNRMLPDVTRNNYVFSDGIGIITPDLAVEVAEKLKLDNVPSAYQIRFAGFKGV 2049
            VEV ANEVN MLPDV RNNYVFSDGIGIIT DLAVEVAEKLKLD  PSAYQIR+AGFKGV
Sbjct: 552  VEVPANEVNSMLPDVERNNYVFSDGIGIITTDLAVEVAEKLKLDKAPSAYQIRYAGFKGV 611

Query: 2048 VASWPAKGDGFRLQLRPSMNKFQSTHSTLEICSWTRFQPGFLNRQIITLLSALDVSDEIF 1869
            VA WPAKGDG +L LRPSMNKFQSTH+TLEIC+WTRFQPGFLNRQIITLLSALDV DEIF
Sbjct: 612  VACWPAKGDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVPDEIF 671

Query: 1868 WKMQEVMISRLNQMLIDVDVAFDVLTKSCAEHGNAAAIMLSCGFSPQTEPHLRGMLTSIR 1689
            WKMQE MIS LNQML+D DVA+DVLTKSCAEHGNAAAIMLSCGFSP+TEPHLRGML SIR
Sbjct: 672  WKMQEGMISSLNQMLVDRDVAYDVLTKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIR 731

Query: 1688 AAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSETK 1509
            AAQLWGLREKSRIFVSSGRWLMGVLDE GVLEQGQCFVQVSTPSLENCFSKHGSRFSETK
Sbjct: 732  AAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETK 791

Query: 1508 NLQVVKGYVVIAKNPCLHPGDVRVLEAVDAPDLHHLYDCLVFPQKGDRPHTNEASGSDLD 1329
             + VVKG VVIAKNPCLHPGDVRVLEAVD PDLHHLYDC+VFPQKG+RPHT+EASGSDLD
Sbjct: 792  TVHVVKGIVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCVVFPQKGERPHTDEASGSDLD 851

Query: 1328 GDLYFVTWEENLIPPSKRSWIPMEYTAQESKLQTRQVTIRDIIEFFAKNMVNEHLGAICN 1149
            GDLYFVTW+ NLIPPSKRSW PMEY AQES+LQTRQVT++DII+FF +NMVNE LG+ICN
Sbjct: 852  GDLYFVTWDGNLIPPSKRSWPPMEYAAQESRLQTRQVTVQDIIDFFVRNMVNEQLGSICN 911

Query: 1148 AHVVHADSSDYGAMDEKCITLAELAATAVDFPKTGKLVTMPSHLKPKLYPDFMGKEQHQS 969
            AHVVHADSSDYGA+DE C+ LAELAATAVDFPKTGKLVTMPS+LKPKLYPDFMGKE HQS
Sbjct: 912  AHVVHADSSDYGALDENCVHLAELAATAVDFPKTGKLVTMPSNLKPKLYPDFMGKEHHQS 971

Query: 968  YKSTKILGRLYRRIKDAYDEDIDAPDLNNVGGDIPYDTDLEVPGSADFIADAWEQKCSYD 789
            YKS KILGRLYRRIKDAYD+DIDAP+ N V  DI YDTDLEVPGS++FIADAWEQ+CSYD
Sbjct: 972  YKSKKILGRLYRRIKDAYDKDIDAPEFNCVSSDILYDTDLEVPGSSEFIADAWEQRCSYD 1031

Query: 788  GQLSALLGQYKVKREEEVVTGQIWSMPKYNSKKQGELKERLKHSYSALRKEFRQTFEKLN 609
            GQLS LLGQYKVK EEEVVTGQIWSMPKYNS+KQGELKERLKHSYSAL+KEFRQ FEKL 
Sbjct: 1032 GQLSGLLGQYKVKTEEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQIFEKLK 1091

Query: 608  SDVGELSDEEKNLLYEQKASAWYQVTYNPKWVKKSRDLQIKSPENQEPDSLGNMVMLSFP 429
            SDVGELSD+EKNLLYEQKASAWYQVTY+PKWVKKS DLQ+KS +NQ  DSLGNMVMLSFP
Sbjct: 1092 SDVGELSDKEKNLLYEQKASAWYQVTYHPKWVKKSLDLQLKSSDNQSADSLGNMVMLSFP 1151

Query: 428  WIAVDYIARTKIRHQGSGKIVSTKPVDSLAKYLSERL 318
            WIAVDY+A TK RH+      STK VDSLAKYLSERL
Sbjct: 1152 WIAVDYLACTKTRHRRVKDFDSTKQVDSLAKYLSERL 1188


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1785 bits (4624), Expect = 0.0
 Identities = 871/1199 (72%), Positives = 1004/1199 (83%), Gaps = 9/1199 (0%)
 Frame = -3

Query: 3887 VTQVSIGGFGSEVKANDLVTFLEDKFGLVDRCRLKTSWTPPESYPEFSIIDTAQIKKTDD 3708
            VTQVS GGF  +V A DLV +L+++ G V RCRLKTSWTPPESYP F I DTA I++ D 
Sbjct: 12   VTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEITDTAVIQRVDA 71

Query: 3707 YKKVEPHAFVHFASAESATDAFNASGCCDLFWKSQALKIIRGPQNPNLLNQRRRDTAPFK 3528
            Y++VEPHAFVHFAS +SAT A NA+G C+LF+  + +K+  GP+NP  LNQRRR T PFK
Sbjct: 72   YRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHLNQRRRTTIPFK 131

Query: 3527 MSDVLVEIGTLVSPEEFYVAWRGPDKGVNFLVDPFDRMCKLCFNRDVAFSFKGIEKKAVI 3348
            +SDV VEIGTLVS +EF V WRGP  GV+FLVDPFD  CK CF RD AFSFKG  + AVI
Sbjct: 132  LSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAFSFKGTTEHAVI 191

Query: 3347 KCDFKVGFLVRDIYEIRRYNDTSYHVVLLQLASSPLVWYRTADDDIEEPVTYDLLDDDDP 3168
            +CDFK+ FLVRDI EI++Y DTS  V+LLQLAS+P VWYRTADDDIE  V +DLLDDDDP
Sbjct: 192  RCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVLVPFDLLDDDDP 251

Query: 3167 WIRTTDFTPSGAIGRCNFYRISIPPRYGAKLTKAMGYLGGQRVQEVPLKRPLRIRDEPGF 2988
            WIRTTDFTPSGAIGRCN YR+SIPPR+GAKL +A+ +L  +RVQE  L+RPL +  EP +
Sbjct: 252  WIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLRRPLHVTAEPEY 311

Query: 2987 GVSMSDAFFHIHFQKGITFDIMFLINAIVHKGIFNQHSLSDRFFELLRNQPKEVNVAALK 2808
             + MSD FF IH ++G+ F++MFL+NA++HKGIFNQH LSD FF+LLRNQP +VN+AAL+
Sbjct: 312  EMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPLDVNIAALR 371

Query: 2807 HLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQLDDIVEVRRLVITPTKAYCVPPEVE 2628
            H+CSYK PVFDA KRLK VQ+WLL+NPKL++SSKQLDDIVE+RRL ITPT+AYC+PPEVE
Sbjct: 372  HICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITPTRAYCLPPEVE 431

Query: 2627 LSNRVLRRFREVSDHFLRVTFMDEGMQTINVNALNYYVAPIVREITSNSFPQKTKIYKRV 2448
            LSNRVLRR+++++D FLRVTFMDEG+QT+N N L YY APIVR+ITSNSF QKT+I+KRV
Sbjct: 432  LSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQKTRIFKRV 491

Query: 2447 KTILDEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEGSDISCDAIRNWMGKFNHKNVAKCA 2268
            K+IL +GFY CGRKYSFLAFSSNQLRDRSAWFFAE    S   IRNWMGKF ++N+AKCA
Sbjct: 492  KSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKFTNRNIAKCA 551

Query: 2267 ARMGQCFSSTYATVEVAANEVNRMLPDVTRNNYVFSDGIGIITPDLAVEVAEKLKLD-NV 2091
            ARMGQCFSSTYATVEV + E    LPD+ RNNY+FSDGIG+ITPDLA EVAEKLKL+ N 
Sbjct: 552  ARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKEVAEKLKLEVNP 611

Query: 2090 PSAYQIRFAGFKGVVASWPAKGDGFRLQLRPSMNKFQSTHSTLEICSWTRFQPGFLNRQI 1911
            P AYQIR+AG KGVVA WPA  DG RL LR SMNKF S H+TLEICSWTRFQPGFLNRQI
Sbjct: 612  PCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPGFLNRQI 671

Query: 1910 ITLLSALDVSDEIFWKMQEVMISRLNQMLIDVDVAFDVLTKSCAEHGNAAAIMLSCGFSP 1731
            ITLLS LDV DEIFWKMQ VM+S+LNQM +D DVAFDV+T SCAE GN AAIMLS GF+P
Sbjct: 672  ITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAAIMLSAGFNP 731

Query: 1730 QTEPHLRGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLE 1551
            +TEPHL GMLT IRAAQLWGLREK+RIFV SGRWLMG LDE GVLE GQCF+QVS PSLE
Sbjct: 732  KTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSLE 791

Query: 1550 NCFSKHGSRFSET-KNLQVVKGYVVIAKNPCLHPGDVRVLEAVDAPDLHHLYDCLVFPQK 1374
            +CF KHGSRFSE+ K LQVVKG VV+AKNPCLHPGD+R+LEAVDAP+LHHL+DCLVFPQK
Sbjct: 792  SCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDCLVFPQK 851

Query: 1373 GDRPHTNEASGSDLDGDLYFVTWEENLIPPSKRSWIPMEYTAQESKLQTRQVTIRDIIEF 1194
            GDRPHTNEASGSDLDGDLYFVTW+ENLIPPSKRSW+PM+Y A E+K   R V  +DII+F
Sbjct: 852  GDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRPVNHQDIIDF 911

Query: 1193 FAKNMVNEHLGAICNAHVVHADSSDYGAMDEKCITLAELAATAVDFPKTGKLVTMPSHLK 1014
            FAKNMVNE+LGAICNAHVVHAD S+YGA+DE CI LAELAATAVDFPKTGKLVTMP HLK
Sbjct: 912  FAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGKLVTMPPHLK 971

Query: 1013 PKLYPDFMGKEQHQSYKSTKILGRLYRRIKDAYDEDIDAPD-------LNNVGGDIPYDT 855
            PKLYPDFMGKE +QSY S KILGRLYR++KD Y++D D  D       LN V GDIPYD 
Sbjct: 972  PKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSELNLVRGDIPYDK 1031

Query: 854  DLEVPGSADFIADAWEQKCSYDGQLSALLGQYKVKREEEVVTGQIWSMPKYNSKKQGELK 675
            DLEV GS+D+I DAW+QKCSYDGQL  LL QYKVKREEEVVTG IWSMPK NS+KQGELK
Sbjct: 1032 DLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKCNSRKQGELK 1091

Query: 674  ERLKHSYSALRKEFRQTFEKLNSDVGELSDEEKNLLYEQKASAWYQVTYNPKWVKKSRDL 495
            ERLK SY +L+KEFRQ FEK++SD  +L+++EKNLLYEQKASAWYQV Y+PKWV KS +L
Sbjct: 1092 ERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPKWVNKSMEL 1151

Query: 494  QIKSPENQEPDSLGNMVMLSFPWIAVDYIARTKIRHQGSGKIVSTKPVDSLAKYLSERL 318
                   QEPD+ G   MLSF WIA DY+AR KIR +G   + ++KPV+SL KYL++R+
Sbjct: 1152 -------QEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKYLADRI 1203


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1198

 Score = 1777 bits (4603), Expect = 0.0
 Identities = 862/1194 (72%), Positives = 1006/1194 (84%), Gaps = 4/1194 (0%)
 Frame = -3

Query: 3887 VTQVSIGGFGSEVKANDLVTFLEDKFGLVDRCRLKTSWTPPESYPEFSIIDTAQIKKTDD 3708
            VTQVS+GGF   V A DL+ +LE + GLV RCRLKTSWTPPESYP F I D  +I +T+D
Sbjct: 12   VTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKITRTED 71

Query: 3707 YKKVEPHAFVHFASAESATDAFNASGCCDLFWKSQALKIIRGPQNPNLLNQRRRDTAPFK 3528
            Y++VEPHAFVHFA  +SAT A +A+  C+LF  ++ LK   GP+NP  LNQRRR T PFK
Sbjct: 72   YRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTLNQRRRKTTPFK 131

Query: 3527 MSDVLVEIGTLVSPEEFYVAWRGPDKGVNFLVDPFDRMCKLCFNRDVAFSFKGIEKKAVI 3348
            +S V VEIGTLVS +EF+V WRGP  GV+FLVDPFD  C+ CF+R+ AFSFK   + AVI
Sbjct: 132  LSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEHAVI 191

Query: 3347 KCDFKVGFLVRDIYEIRRYNDTSYHVVLLQLASSPLVWYRTADDDIEEPVTYDLLDDDDP 3168
            KCDFKV FLVRDI EI++Y +TS  V+LLQLAS+P VWYRTADDDIE  V +DLLDDDDP
Sbjct: 192  KCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDDDDP 251

Query: 3167 WIRTTDFTPSGAIGRCNFYRISIPPRYGAKLTKAMGYLGGQRVQEVPLKRPLRIRDEPGF 2988
            WIRTTDFT SGAIGRC+ YR+SIPPR+G KL KA+ +L  +RVQE  L+RP+RIRDEP F
Sbjct: 252  WIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLRRPIRIRDEPDF 311

Query: 2987 GVSMSDAFFHIHFQKGITFDIMFLINAIVHKGIFNQHSLSDRFFELLRNQPKEVNVAALK 2808
            G+ M+D FF IH ++GI FD++FL+NA++HKGIFNQH LS+ FF+LLRNQP EVNVAALK
Sbjct: 312  GMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNVAALK 371

Query: 2807 HLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQSSKQLDDIVEVRRLVITPTKAYCVPPEVE 2628
            H+  Y+RPVFDA K+LK  QEWLL+NPK +++ K+LDDI E+RRLVITPTKAYC+PPEVE
Sbjct: 372  HIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITPTKAYCLPPEVE 431

Query: 2627 LSNRVLRRFREVSDHFLRVTFMDEGMQTINVNALNYYVAPIVREITSNSFPQKTKIYKRV 2448
            LSNRVLR++++V+D FLRVTFMDEG+QT+N NALNY+ APIVR ITS SFPQKT+I+KRV
Sbjct: 432  LSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTRIFKRV 491

Query: 2447 KTILDEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEGSDISCDAIRNWMGKFNHKNVAKCA 2268
            ++IL EGFY CGR+YSFLAFSSNQLRDRSAWFFAE  +I+  AI++WMGKF +KN+AKCA
Sbjct: 492  RSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFTNKNIAKCA 551

Query: 2267 ARMGQCFSSTYATVEVAANEVNRMLPDVTRNNYVFSDGIGIITPDLAVEVAEKLKLD-NV 2091
            ARMGQCFSSTYAT+EV   EVN  LPD+ RN Y FSDGIG+ITPDLA EVAEKLK D + 
Sbjct: 552  ARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLAREVAEKLKFDFDP 611

Query: 2090 PSAYQIRFAGFKGVVASWPAKGDGFRLQLRPSMNKFQSTHSTLEICSWTRFQPGFLNRQI 1911
            P AYQIR+AG KGVVA WP +GDG RL LR SMNKFQS H+ LEICSWTRFQPGFLNRQI
Sbjct: 612  PCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGFLNRQI 671

Query: 1910 ITLLSALDVSDEIFWKMQEVMISRLNQMLIDVDVAFDVLTKSCAEHGNAAAIMLSCGFSP 1731
            ITLLSAL+V D +FWKMQE+M+S+LNQML+D DVAFDVLT SCAE GN AAIMLS GF P
Sbjct: 672  ITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLSAGFKP 731

Query: 1730 QTEPHLRGMLTSIRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLE 1551
            Q EPHLRGMLT +RAAQLWGLREK+RIFV SGRWLMG LDE GVLEQGQCF+QVS   LE
Sbjct: 732  QKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSNSYLE 791

Query: 1550 NCFSKHGSRFSET-KNLQVVKGYVVIAKNPCLHPGDVRVLEAVDAPDLHHLYDCLVFPQK 1374
            NCF KHGS+FSET KNLQVVKG VVIAKNPCLHPGD+R+LEAVDAP LHHLYDCLVFPQK
Sbjct: 792  NCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQK 851

Query: 1373 GDRPHTNEASGSDLDGDLYFVTWEENLIPPSKRSWIPMEYTAQESKLQTRQVTIRDIIEF 1194
            G+RPH NEASGSDLDGDLYFVTW+ENLIPPSKRSWIPM+Y A E+K  TR V  +DI+EF
Sbjct: 852  GERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVNHQDIVEF 911

Query: 1193 FAKNMVNEHLGAICNAHVVHADSSDYGAMDEKCITLAELAATAVDFPKTGKLVTMPSHLK 1014
            FAKNM NE+LGAICNAHVV AD S+YGA+DEKC+TLAELAATAVDFPKTGK+V+MPS LK
Sbjct: 912  FAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKIVSMPSDLK 971

Query: 1013 PKLYPDFMGKEQHQSYKSTKILGRLYRRIKDAYDED--IDAPDLNNVGGDIPYDTDLEVP 840
            PK+YPDFMGKE+HQSYKS KILGRLYR+IKDAYD+D    + +LN V GDIPYD DLEV 
Sbjct: 972  PKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDLDLEVL 1031

Query: 839  GSADFIADAWEQKCSYDGQLSALLGQYKVKREEEVVTGQIWSMPKYNSKKQGELKERLKH 660
            G+ DFI+DAW++KCSYDGQL+ LL QYKVKREEEVVTG +WSMPK +S+KQG+LKERLKH
Sbjct: 1032 GATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQGDLKERLKH 1091

Query: 659  SYSALRKEFRQTFEKLNSDVGELSDEEKNLLYEQKASAWYQVTYNPKWVKKSRDLQIKSP 480
            SY+ L++EFRQ FEK++ D G+L D+EKN+LYE+KASAWYQVTY+P W++KS +L     
Sbjct: 1092 SYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLEL----- 1146

Query: 479  ENQEPDSLGNMVMLSFPWIAVDYIARTKIRHQGSGKIVSTKPVDSLAKYLSERL 318
              Q+ D  G  VMLSF WIA DY+AR KIRH   G + S KPV+SLAKYL++R+
Sbjct: 1147 --QDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198