BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00008413
         (1261 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514231.1| RNA-dependent RNA polymerase, putative [Rici...    87   9e-15
ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Ar...    86   2e-14
ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Popu...    86   3e-14
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...    85   3e-14
ref|XP_002336366.1| rna-dependent RNA polymerase [Populus tricho...    85   3e-14

>ref|XP_002514231.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
           gi|223546687|gb|EEF48185.1| RNA-dependent RNA
           polymerase, putative [Ricinus communis]
          Length = 114

 Score = 87.0 bits (214), Expect = 9e-15
 Identities = 37/50 (74%), Positives = 44/50 (88%)
 Frame = -1

Query: 799 VYRNPGMHFGDIHILHARYVEGLESYVGQSKYAIFFPCVGPRSIADEIAG 650
           VYRNPG+HFGDIH+L A YV+ LE +VG +KYAIFFPC GP+S+ADEIAG
Sbjct: 34  VYRNPGLHFGDIHVLKATYVKALEDFVGNAKYAIFFPCKGPQSLADEIAG 83


>ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
           gi|322967571|sp|O82189.2|RDR4_ARATH RecName:
           Full=Probable RNA-dependent RNA polymerase 4;
           Short=AtRDRP4; AltName: Full=RNA-directed RNA polymerase
           4 gi|330251849|gb|AEC06943.1| RNA-dependent RNA
           polymerase family protein [Arabidopsis thaliana]
          Length = 927

 Score = 85.9 bits (211), Expect = 2e-14
 Identities = 45/87 (51%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
 Frame = -1

Query: 799 VYRNPGMHFGDIHILHARYVEGLESYVGQSKYAIFFPCVGPRSIADEIAG---DGSPAGG 629
           VYRNPG+HFGDIHIL A YV+ LE YVG SKY +FFP  GPRS+ DEIAG   DG     
Sbjct: 631 VYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFI 690

Query: 628 ADEGR*IESVTPRGKWGGVDNKPRDPV 548
           +   + +E   P   W  V + PR  +
Sbjct: 691 SRNPKLLEHYKPSEPW--VSSSPRSKI 715


>ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
           gi|222852929|gb|EEE90476.1| hypothetical protein
           POPTRDRAFT_562705 [Populus trichocarpa]
          Length = 406

 Score = 85.5 bits (210), Expect = 3e-14
 Identities = 37/50 (74%), Positives = 43/50 (86%)
 Frame = -1

Query: 799 VYRNPGMHFGDIHILHARYVEGLESYVGQSKYAIFFPCVGPRSIADEIAG 650
           VYRNPG+HFGDIHIL A YV  LE +VG +KYAIFFPC GPRS+ADE++G
Sbjct: 333 VYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSG 382


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
           RNA polymerase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 981

 Score = 85.1 bits (209), Expect = 3e-14
 Identities = 38/50 (76%), Positives = 42/50 (84%)
 Frame = -1

Query: 799 VYRNPGMHFGDIHILHARYVEGLESYVGQSKYAIFFPCVGPRSIADEIAG 650
           VYRNPG+HFGDIHIL A YV+ LE YVG SKYA+FFP  GPRS+ DEIAG
Sbjct: 635 VYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAG 684


>ref|XP_002336366.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222834816|gb|EEE73265.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 320

 Score = 85.1 bits (209), Expect = 3e-14
 Identities = 36/50 (72%), Positives = 43/50 (86%)
 Frame = -1

Query: 799 VYRNPGMHFGDIHILHARYVEGLESYVGQSKYAIFFPCVGPRSIADEIAG 650
           +YRNPG+HFGDIHIL A YV  LE +VG +KYAIFFPC GPRS+ADE++G
Sbjct: 109 IYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSG 158