BLASTX nr result
ID: Glycyrrhiza23_contig00008235
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00008235
(706 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas... 49 9e-17
gb|AFK48593.1| unknown [Lotus japonicus] 62 2e-16
gb|ABE80156.1| Ribonuclease H [Medicago truncatula] 49 6e-15
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 54 2e-14
gb|ABD28646.1| Ribonuclease H [Medicago truncatula] 51 1e-13
>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 869
Score = 48.5 bits (114), Expect(3) = 9e-17
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = -3
Query: 464 RAGVGGLLRIEDGDWVAGFAGFMGDTS-IL*AELVAIYYGLDLA*TXXXXXXRSVTDSMV 288
RAG GGL+R G +++GF GF+ +S IL AEL AIY G++ A +DS++
Sbjct: 726 RAGFGGLIRNSVGFYLSGFLGFLPSSSDILLAELTAIYDGINTAIDMGITDMAVYSDSLL 785
Query: 287 AFHLLSRLVELSHSLASVLLSIKELL 210
+ +L++ H A+++ I++ L
Sbjct: 786 SINLITTTSSKFHIHAALIQDIRDKL 811
Score = 44.7 bits (104), Expect(3) = 9e-17
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = -1
Query: 190 VNHSLREGNQSANFLAKYGARKNQHVIILEMPLPRMEVMLLADLMGVEFPR 38
+NH+LREGNQSA++LAK GA + +V+I + P + +L D G F R
Sbjct: 818 LNHTLREGNQSADYLAKLGAMSDVNVLIHQSPPDELCPLLKNDAAGTLFLR 868
Score = 39.3 bits (90), Expect(3) = 9e-17
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = -2
Query: 666 WTARNKACVAKEEVDKFRVVREAQWLVDTIHHCFYYGLQAPRVKRWVSLNPYGDSSHMLN 487
W +RN C+++E + R+ + VD I+ CF+ L R+V N + +LN
Sbjct: 656 WRSRNARCMSEESMLLQRLAANITYFVDDINSCFFQPLPVMVSDRYVKWNNSNFNCTILN 715
Query: 486 VDG 478
VDG
Sbjct: 716 VDG 718
>gb|AFK48593.1| unknown [Lotus japonicus]
Length = 272
Score = 61.6 bits (148), Expect(2) = 2e-16
Identities = 28/56 (50%), Positives = 39/56 (69%)
Frame = -1
Query: 205 DWIVQVNHSLREGNQSANFLAKYGARKNQHVIILEMPLPRMEVMLLADLMGVEFPR 38
DWIV++ H+LREGN A+ L K+GA +N ++I E P+ + V+LLAD GV F R
Sbjct: 216 DWIVELRHTLREGNACADLLVKHGADQNDDLVITENPIAGLGVLLLADARGVSFVR 271
Score = 49.7 bits (117), Expect(2) = 2e-16
Identities = 28/87 (32%), Positives = 43/87 (49%)
Frame = -3
Query: 464 RAGVGGLLRIEDGDWVAGFAGFMGDTSIL*AELVAIYYGLDLA*TXXXXXXRSVTDSMVA 285
R G GG R G+W+ GF G++ + IL EL+ +++GL LA +DS A
Sbjct: 129 RGGFGGCFRTIHGNWLRGFFGYLDECCILHLELLGMFHGLSLAWEQGYRIVECQSDSQDA 188
Query: 284 FHLLSRLVELSHSLASVLLSIKELLGR 204
L+ H A+++ IK+L R
Sbjct: 189 VTLVKSTPSSCHRYAALVWDIKDLQSR 215
>gb|ABE80156.1| Ribonuclease H [Medicago truncatula]
Length = 438
Score = 49.3 bits (116), Expect(3) = 6e-15
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = -3
Query: 464 RAGVGGLLRIEDGDWVAGFAGFM-GDTSIL*AELVAIYYGLDLA*TXXXXXXRSVTDSMV 288
R G GG+LR G +++GF+GF+ T IL AEL AI+ L + +DS++
Sbjct: 295 RTGYGGILRNSAGLFISGFSGFIPNSTDILQAELTAIHQSLHMVIDSNMNDVMCYSDSLL 354
Query: 287 AFHLLSRLVELSHSLASVLLSIKELL 210
A +L+ H+ A ++ +IK+LL
Sbjct: 355 AVNLIMNDTPRYHTYAVLIQNIKDLL 380
Score = 46.2 bits (108), Expect(3) = 6e-15
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = -1
Query: 196 VQVNHSLREGNQSANFLAKYGARKNQHVIILEMPLPRMEVMLLADLMGVEFPR 38
+ ++H+LREGNQ A+F AK GA + H+++ + P + +L AD +G F R
Sbjct: 385 ITLHHTLREGNQCADFFAKLGANSDVHLVVHQSPPADLLPLLRADAIGTVFIR 437
Score = 30.8 bits (68), Expect(3) = 6e-15
Identities = 19/64 (29%), Positives = 24/64 (37%)
Frame = -2
Query: 669 AWTARNKACVAKEEVDKFRVVREAQWLVDTIHHCFYYGLQAPRVKRWVSLNPYGDSSHML 490
AW RN C+ E + FR+ I F R+V N H+L
Sbjct: 224 AWRHRNLMCLNNETMSLFRLCNNIVSAATYIKSAFDSEENVNHSDRFVKWNNRNHHDHIL 283
Query: 489 NVDG 478
NVDG
Sbjct: 284 NVDG 287
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 54.3 bits (129), Expect(3) = 2e-14
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = -3
Query: 464 RAGVGGLLRIEDGDWVAGFAGFMGD-TSIL*AELVAIYYGLDLA*TXXXXXXRSVTDSMV 288
RAG GG+ R G +++G++GF+ + T IL AEL A++ GL +A +DS++
Sbjct: 1153 RAGFGGIFRNNVGGYLSGYSGFISESTDILLAELTALHQGLIMAAEMGIEELACYSDSLL 1212
Query: 287 AFHLLSRLVELSHSLASVLLSIKELL 210
+L++R H+ A ++ IK+LL
Sbjct: 1213 TINLITRTTSKYHTYAVLIQDIKDLL 1238
Score = 42.7 bits (99), Expect(3) = 2e-14
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = -1
Query: 190 VNHSLREGNQSANFLAKYGARKNQHVIILEMPLPRMEVMLLADLMGVEFPR 38
V H REGNQ A++LAK GA N+ ++ + V++ D +G FPR
Sbjct: 1245 VYHCFREGNQCADYLAKLGASSNEECLVHASACQELLVLIQMDAIGTLFPR 1295
Score = 26.9 bits (58), Expect(3) = 2e-14
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = -2
Query: 669 AWTARNKACVAKEEVDKFRVVREAQWLVDTIHHCFYYG-LQAPRVKRWVSLNPYGDSSHM 493
+W RN C++ E R+ ++ I F + P R V N H+
Sbjct: 1081 SWRHRNLMCLSNETWPLTRISFRINDSINAIRSAFVKSNVIQPDSARMVKWNQGNHQCHI 1140
Query: 492 LNVDG 478
LNVDG
Sbjct: 1141 LNVDG 1145
>gb|ABD28646.1| Ribonuclease H [Medicago truncatula]
Length = 208
Score = 50.8 bits (120), Expect(3) = 1e-13
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = -3
Query: 464 RAGVGGLLRIEDGDWVAGFAGFMGD-TSIL*AELVAIYYGLDLA*TXXXXXXRSVTDSMV 288
RAG GG++R G +++ F+GF+ D T IL AEL AI+ G +A +DS++
Sbjct: 65 RAGYGGIIRNSAGLYLSCFSGFIADSTDILLAELTAIHRGFSIASDMGVNEMACYSDSLL 124
Query: 287 AFHLLSRLVELSHSLASVLLSIKELL 210
+ +L++ H+ A ++ IK+LL
Sbjct: 125 SINLITGQASKYHAYAVLIQDIKDLL 150
Score = 47.0 bits (110), Expect(3) = 1e-13
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = -1
Query: 190 VNHSLREGNQSANFLAKYGARKNQHVIILEMPLPRMEVMLLADLMGVEFPR 38
+ H LREGNQ A+F+AK+GA N I P + V+L D +G FPR
Sbjct: 157 IQHCLREGNQCADFMAKFGASSNNVCFIHPSPPQDLHVLLRNDAIGTCFPR 207
Score = 24.3 bits (51), Expect(3) = 1e-13
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = -2
Query: 645 CVAKEEVDKFRVVREAQWLVDTIHHCFYYGLQAP--RVKRWVSLNPYGDSSHMLNVDGRK 472
C++ + R+ Q DTI F P R+ RW S N H+LNVDG
Sbjct: 3 CLSNDTWSLTRLSFYIQNSADTIKSSFQNSSATPHDRMVRWNSNNHL---CHILNVDGSC 59
Query: 471 DG 466
G
Sbjct: 60 SG 61