BLASTX nr result
ID: Glycyrrhiza23_contig00008190
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00008190
(1565 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003537767.1| PREDICTED: DNA-directed RNA polymerase III s... 661 0.0
ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5... 582 e-164
ref|XP_003589437.1| hypothetical protein MTR_1g024320 [Medicago ... 452 e-124
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s... 433 e-119
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 431 e-118
>ref|XP_003537767.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Glycine
max]
Length = 680
Score = 661 bits (1706), Expect = 0.0
Identities = 343/471 (72%), Positives = 389/471 (82%), Gaps = 2/471 (0%)
Frame = +2
Query: 2 QHLNSGGSKGKNAISAGANATVKTEESGEEKSVATSKKQNKQMEPSIEQRSDGDECWVPL 181
QHLNSGGSK KNA S GANATVK E S EEKSVATSKKQ CWVPL
Sbjct: 226 QHLNSGGSKRKNAASTGANATVKIEGSNEEKSVATSKKQ----------------CWVPL 269
Query: 182 KYHGCKSDISSRYLQQLVAQESSPINFTMSAHDYITTLCPGVSSNILPKGPSKRYLLSLP 361
KYH CKSDISSRYLQQ+V QESSPINFTM A+DY+T LCPG SSN LPKG SKRYLLSLP
Sbjct: 270 KYHSCKSDISSRYLQQMVTQESSPINFTMRAYDYVTALCPGGSSNNLPKGLSKRYLLSLP 329
Query: 362 VEERLKKMLVEGPPLHRFSAIKHFALEYSNEKLLDFLKRHAKLIWGLWTPNSGLLYPQG- 538
VEERLKKML E PLHRFSAIKHFA EYS +LL FL++HA L+WGLWT S LLYP G
Sbjct: 330 VEERLKKML-EDRPLHRFSAIKHFAPEYSENELLGFLQQHAILVWGLWTAKSSLLYPDGG 388
Query: 539 VETLARDYVLVLFNKNLKVQSSDLNVKG-ELANYVKNFLKIFGLERCDLNKTISQSMPYW 715
VETLARDY L+LF+K+LKVQ SD++++G EL N V+N LKIFG+ER DL+K+ + PYW
Sbjct: 389 VETLARDYSLLLFSKSLKVQFSDVSIRGGELVNRVRNCLKIFGVERNDLDKSTGKPNPYW 448
Query: 716 KFRELPDESFKKNFPNVVKEQELLFESLERHVYGVIGNVGKRKLSKSAVANSGVNSDLVQ 895
KFRELPDESFKK +P++V++QE LF+ LE+ + G NVGKRK+ K+AVAN GVN+++ +
Sbjct: 449 KFRELPDESFKKLYPDIVEKQEELFKGLEKQLSGFSSNVGKRKIGKNAVANQGVNTEVHK 508
Query: 896 PANPDPRVTSLSGVPPGRMTMSNETRHALPIALKKLFQTHKVCSFQMICQGLREMAVSKT 1075
+ D RVTSL VPP +MTMSNETRHALPIALKKLFQTHKVCSF++IC+GLREMAVSK
Sbjct: 509 SESSDQRVTSLGRVPPAKMTMSNETRHALPIALKKLFQTHKVCSFKLICEGLREMAVSKA 568
Query: 1076 MLSKGDSKIAVDAARSLDGPQDELKAVINEVACDIHGYYVLKSSQDDPFRDVVIDMLRGS 1255
MLSKGDSK+AVDAA SLDGP +EL AVI+EVAC+I+G YVLKSS DDPFRDVVIDML GS
Sbjct: 569 MLSKGDSKMAVDAAHSLDGPHNELMAVISEVACEINGSYVLKSSPDDPFRDVVIDMLCGS 628
Query: 1256 GPNAKLRKAEILEAARRKLSRELTNNEYIKVMGELCVSKGSVWVLKSGDGS 1408
GPNAKL+KAEILEAARRKL RE+ +NEY KVM ELCVSKGSVWVLKSGDGS
Sbjct: 629 GPNAKLKKAEILEAARRKLGREVASNEYTKVMSELCVSKGSVWVLKSGDGS 679
>ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5 [Medicago truncatula]
gi|358344405|ref|XP_003636280.1| DNA-directed RNA
polymerase III subunit RPC5 [Medicago truncatula]
gi|355502215|gb|AES83418.1| DNA-directed RNA polymerase
III subunit RPC5 [Medicago truncatula]
gi|355513299|gb|AES94922.1| DNA-directed RNA polymerase
III subunit RPC5 [Medicago truncatula]
Length = 683
Score = 582 bits (1500), Expect = e-164
Identities = 298/456 (65%), Positives = 358/456 (78%), Gaps = 13/456 (2%)
Frame = +2
Query: 86 EEKSVATSKKQNKQMEPSIEQRSDG----------DECWVPLKYHGCKSDISSRYLQQLV 235
E+K+VATS QNKQ PS+EQ+SDG ++CWVPL+YHGCKSDISSRY QQ+V
Sbjct: 232 EKKNVATSNNQNKQTTPSMEQKSDGAPSIEQKSDSNQCWVPLEYHGCKSDISSRYFQQMV 291
Query: 236 AQESSPINFTMSAHDYITTLCPGVSSNILPKGPSKRYLLSLPVEERLKKMLVEGPPLHRF 415
ESSPINF MS +DYI TLCPGVSSN L KGPSKRYLLSLPVE+RL+ +L+EGPPLHRF
Sbjct: 292 THESSPINFEMSTYDYIATLCPGVSSNTLAKGPSKRYLLSLPVEKRLQTLLIEGPPLHRF 351
Query: 416 SAIKHFALEYSNEKLLDFLKRHAKLIWGLWTPNSGLLYPQG-VETLARDYVLVLFNKNLK 592
SAIKHFA E S+++LL L++ A+L+ G W P S LL+P G +E+LAR+Y+LV F+K+L
Sbjct: 352 SAIKHFAPECSDDELLSVLEKQAQLLRGYWVPRSSLLFPTGGIESLARNYILVRFHKSLT 411
Query: 593 VQSSDLNVKG--ELANYVKNFLKIFGLERCDLNKTISQSMPYWKFRELPDESFKKNFPNV 766
V+S +L G EL N +K+F+ F LE+ DL + YWKF+ELPDESF K FP V
Sbjct: 412 VKSDELRRLGGGELGNRMKHFVMQFALEKFDLKSKEN----YWKFKELPDESFIKEFPIV 467
Query: 767 VKEQELLFESLERHVYGVIGNVGKRKLSKSAVANSGVNSDLVQPANPDPRVTSLSGVPPG 946
VK+QE +F+ LE V +IG +G ++ KSA+ NSGVN+ L N DPR TSL PP
Sbjct: 468 VKKQEEIFKILENEVNSIIGTLGGKRKLKSAITNSGVNNALFTSTNSDPRATSLGEDPPR 527
Query: 947 RMTMSNETRHALPIALKKLFQTHKVCSFQMICQGLREMAVSKTMLSKGDSKIAVDAARSL 1126
MTMS+ETRHALPIALKKLFQTHKVCSFQ+ICQ LR +A+++TML KG SK++VDAA SL
Sbjct: 528 SMTMSSETRHALPIALKKLFQTHKVCSFQLICQELRGLALAQTMLPKGGSKMSVDAANSL 587
Query: 1127 DGPQDELKAVINEVACDIHGYYVLKSSQDDPFRDVVIDMLRGSGPNAKLRKAEILEAARR 1306
D PQDELKA++ EVACDIHG YVLKS+Q+DPFRDVVIDMLRGSGPN KL+KAEILEAARR
Sbjct: 588 DVPQDELKAILGEVACDIHGCYVLKSAQNDPFRDVVIDMLRGSGPNGKLKKAEILEAARR 647
Query: 1307 KLSRELTNNEYIKVMGELCVSKGSVWVLKSGDGSMQ 1414
KL R++ NNEYIK + ELCVSKGS WVLKSGDGS Q
Sbjct: 648 KLGRDVPNNEYIKAVSELCVSKGSFWVLKSGDGSKQ 683
>ref|XP_003589437.1| hypothetical protein MTR_1g024320 [Medicago truncatula]
gi|355478485|gb|AES59688.1| hypothetical protein
MTR_1g024320 [Medicago truncatula]
Length = 406
Score = 452 bits (1163), Expect = e-124
Identities = 233/360 (64%), Positives = 284/360 (78%), Gaps = 3/360 (0%)
Frame = +2
Query: 344 YLLSLPVEERLKKMLVEGPPLHRFSAIKHFALEYSNEKLLDFLKRHAKLIWGLWTPNSGL 523
YLLSLPVE+RL+ +L+EGPPLHRFSAIKHFA E S+++LL L++ A+L+ G W P S L
Sbjct: 51 YLLSLPVEKRLQTLLIEGPPLHRFSAIKHFAPECSDDELLSVLEKQAQLLRGYWVPRSSL 110
Query: 524 LYPQG-VETLARDYVLVLFNKNLKVQSSDLNVKG--ELANYVKNFLKIFGLERCDLNKTI 694
L+P G +E+LAR+Y+LV F+K+L V+S +L G EL N +K+F+ F LE+ DL
Sbjct: 111 LFPTGGIESLARNYILVRFHKSLTVKSDELRRLGGGELGNRMKHFVMQFALEKFDLKSKE 170
Query: 695 SQSMPYWKFRELPDESFKKNFPNVVKEQELLFESLERHVYGVIGNVGKRKLSKSAVANSG 874
+ YWKF+ELPDESF K FP VVK+QE +F+ LE V +IG +G ++ KSA+ NSG
Sbjct: 171 N----YWKFKELPDESFIKEFPIVVKKQEEIFKILENEVNSIIGTLGGKRKLKSAITNSG 226
Query: 875 VNSDLVQPANPDPRVTSLSGVPPGRMTMSNETRHALPIALKKLFQTHKVCSFQMICQGLR 1054
VN+ L N DPR TSL PP MTMS+ETRHALPIALKKLFQTHKVCSFQ+ICQ LR
Sbjct: 227 VNNALFTSTNSDPRATSLGEDPPRSMTMSSETRHALPIALKKLFQTHKVCSFQLICQELR 286
Query: 1055 EMAVSKTMLSKGDSKIAVDAARSLDGPQDELKAVINEVACDIHGYYVLKSSQDDPFRDVV 1234
+A+++TML KG SK++VDAA SLD PQDELKA++ EVACDIHG YVLKS+Q+DPFRDVV
Sbjct: 287 GLALAQTMLPKGGSKMSVDAANSLDVPQDELKAILGEVACDIHGCYVLKSAQNDPFRDVV 346
Query: 1235 IDMLRGSGPNAKLRKAEILEAARRKLSRELTNNEYIKVMGELCVSKGSVWVLKSGDGSMQ 1414
IDMLRGSGPN KL+KAEILEAARRKL R++ NNEYIK + ELCVSKGS WVLKSGDGS Q
Sbjct: 347 IDMLRGSGPNGKLKKAEILEAARRKLGRDVPNNEYIKAVSELCVSKGSFWVLKSGDGSKQ 406
>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Cucumis
sativus]
Length = 702
Score = 433 bits (1114), Expect = e-119
Identities = 230/476 (48%), Positives = 320/476 (67%), Gaps = 7/476 (1%)
Frame = +2
Query: 2 QHLNSGGSKGKNAISAGANATVKTEESGEEKSVATSKKQNKQMEPSIEQRSDGDECWVPL 181
+HLNSGG K KN + A ++ VK+EE + S S+KQ KQ PS E ++ +ECW+PL
Sbjct: 236 EHLNSGGPKRKNNVRADSD--VKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPL 293
Query: 182 KYHGCKSDISSRYLQQLVAQESSPINFTMSAHDYITTLCPGVS-SNILPKGPSKRYLLSL 358
KY+G +SD+S+R+LQ +V+Q SP+ F+MS HDY+ +LCPG S S PKGPSK+YLLSL
Sbjct: 294 KYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSL 353
Query: 359 PVEERLKKMLVEGPPLHRFSAIKHFALEYSNEKLLDFLKRHAKLIWGLWTPNSGLLYPQ- 535
+EER+KK+L EGPP+ RFSA+KH+A +Y E+ ++ L+++A+L+ GLW P S L PQ
Sbjct: 354 SLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQD 413
Query: 536 GVETLARDYVLVLFNKNLKVQSSDLNVKGELANYVKNFLKIFGLERCDLNKTISQSMPYW 715
G ARD+VL LF+KN V SS +NV L + VK+FL +FG+ER + W
Sbjct: 414 GSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVER--------PAFKDW 465
Query: 716 KFRELPDESFKKNFPNVVKEQELLFESLERHVYGVIGNVGKRKLSKSAVANSGVNSDLVQ 895
KF+E D F N + ++QE L+ ++E+ + + ++ + +A GV L +
Sbjct: 466 KFKEKTDRLFLSNHVRIAEKQEELWNNVEKG-FTFLRSIKSVHHANAATGKPGVVPKLEK 524
Query: 896 PANPDPRVTSLSGVPPGRM-TMSNETRHALPIALKKLFQTHKVCSFQMICQGLREMAVSK 1072
+ D T S P R MS+ETR ALP AL+KLFQ HKVCSFQ+ICQGLR++AVS+
Sbjct: 525 QVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQ 584
Query: 1073 TMLSKGDSKIAVDAARSLDGPQDELKAVINEVACDIHGYYVLKSSQD----DPFRDVVID 1240
+ L K D+++AV AA +D P DELK +I++VA +IHG YVL SS + DP R VVI
Sbjct: 585 STLPKADARMAVAAAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQ 644
Query: 1241 MLRGSGPNAKLRKAEILEAARRKLSRELTNNEYIKVMGELCVSKGSVWVLKSGDGS 1408
+LRG GP A L+KA++LEA++ +L R + +NEY KVM E+C+S GS W LKSGDG+
Sbjct: 645 LLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSWTLKSGDGN 700
>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC5-like [Cucumis sativus]
Length = 702
Score = 431 bits (1108), Expect = e-118
Identities = 229/476 (48%), Positives = 319/476 (67%), Gaps = 7/476 (1%)
Frame = +2
Query: 2 QHLNSGGSKGKNAISAGANATVKTEESGEEKSVATSKKQNKQMEPSIEQRSDGDECWVPL 181
+HLNSGG K KN + A ++ VK+EE + S S+KQ KQ PS E ++ +ECW+PL
Sbjct: 236 EHLNSGGPKRKNNVRADSD--VKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPL 293
Query: 182 KYHGCKSDISSRYLQQLVAQESSPINFTMSAHDYITTLCPGVS-SNILPKGPSKRYLLSL 358
KY+G +SD+S+R+LQ +V+Q SP+ F+MS HDY+ +LCPG S S PKGPSK+YLLSL
Sbjct: 294 KYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSL 353
Query: 359 PVEERLKKMLVEGPPLHRFSAIKHFALEYSNEKLLDFLKRHAKLIWGLWTPNSGLLYPQ- 535
+EER+KK+L EGPP+ RFSA+KH+A +Y E+ ++ L+++A+L+ GLW P S L PQ
Sbjct: 354 SLEERIKKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQD 413
Query: 536 GVETLARDYVLVLFNKNLKVQSSDLNVKGELANYVKNFLKIFGLERCDLNKTISQSMPYW 715
G ARD+VL LF+KN V SS +NV L + VK+FL +FG+ER + W
Sbjct: 414 GSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVER--------PAFKDW 465
Query: 716 KFRELPDESFKKNFPNVVKEQELLFESLERHVYGVIGNVGKRKLSKSAVANSGVNSDLVQ 895
KF+E D F N + ++QE L+ ++E+ + + ++ + +A GV L +
Sbjct: 466 KFKEKTDRLFLSNHVRIAEKQEELWNNVEKG-FTFLRSIKSVHHANAATGKPGVVPKLEK 524
Query: 896 PANPDPRVTSLSGVPPGRM-TMSNETRHALPIALKKLFQTHKVCSFQMICQGLREMAVSK 1072
+ D T S P R MS+ETR ALP AL+KLFQ HKVCSFQ+ICQGLR++AVS+
Sbjct: 525 QVSSDQTTTKSSNAPLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQ 584
Query: 1073 TMLSKGDSKIAVDAARSLDGPQDELKAVINEVACDIHGYYVLKSSQD----DPFRDVVID 1240
+ L K D+++AV AA +D P DEL +I++VA +IHG YVL SS + DP R VVI
Sbjct: 585 STLPKADARMAVAAAYGVDAPPDELXKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQ 644
Query: 1241 MLRGSGPNAKLRKAEILEAARRKLSRELTNNEYIKVMGELCVSKGSVWVLKSGDGS 1408
+LRG GP A L+KA++LEA++ +L R + +NEY KVM E+C+S GS W LKSGDG+
Sbjct: 645 LLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNEICISHGSSWTLKSGDGN 700