BLASTX nr result

ID: Glycyrrhiza23_contig00008107 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00008107
         (959 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003519872.1| PREDICTED: zinc finger CCCH domain-containin...   338   1e-90
ref|XP_003629342.1| Zinc finger CCCH domain-containing protein [...   320   4e-85
ref|XP_002310301.1| predicted protein [Populus trichocarpa] gi|2...   208   1e-51
ref|XP_002327763.1| predicted protein [Populus trichocarpa] gi|2...   208   2e-51
emb|CBI17393.3| unnamed protein product [Vitis vinifera]              189   8e-46

>ref|XP_003519872.1| PREDICTED: zinc finger CCCH domain-containing protein 6-like
           [Glycine max]
          Length = 520

 Score =  338 bits (867), Expect = 1e-90
 Identities = 179/261 (68%), Positives = 198/261 (75%), Gaps = 5/261 (1%)
 Frame = +3

Query: 189 MKRARKSNRVSWATGGNLCQVKLFLSEDYPSKVGQKSQDHLQAKTSSLSHSSTNECIDLP 368
           MKRARKSNRVSWATG NLCQVKLFLSED+PS VGQKSQDHLQAKTSS+ HSS NE  DLP
Sbjct: 1   MKRARKSNRVSWATGDNLCQVKLFLSEDFPSIVGQKSQDHLQAKTSSMLHSSINEPNDLP 60

Query: 369 PGFESSHFLNQSKVEFSHISRIKWECPPLFVFRSRWQVAAGEESREKEDQKLREMRVLEA 548
           PGFESSHFLNQ KVEFS+I +IKWECPP+ V RS+W+VAAGEESREKE+QKLREMRVLEA
Sbjct: 61  PGFESSHFLNQPKVEFSNIPQIKWECPPVVVVRSQWRVAAGEESREKENQKLREMRVLEA 120

Query: 549 VYPRLSAXXXXXXXXLDVEEEDYDDNITPLXXXXXXXXXXTMDILPELAVAANPHPNVQS 728
           +YPRLSA        LDVEEEDYDD  TPL          + DILPELAVA  P PNVQS
Sbjct: 121 LYPRLSAIPPSPSVSLDVEEEDYDDGRTPLIPIIPIEEEESTDILPELAVALKPSPNVQS 180

Query: 729 Q-----ISATTPISSDCNTSRPVSSDACLMPLAGVSPGSEADLXXXXXXXXXIMKSNEQG 893
           Q     ISA T ISS  N +  VS D C+ P+AGVS G EADL         I++SNEQG
Sbjct: 181 QNSQQYISAKTSISSASNAAHAVSLDPCIRPMAGVSSGMEADLAAASSVVATIIRSNEQG 240

Query: 894 SLIDMDLLVKIFNDPNMIEKL 956
           +LIDMDLL KIF DP ++E+L
Sbjct: 241 TLIDMDLLGKIFTDPKILEQL 261


>ref|XP_003629342.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]
           gi|355523364|gb|AET03818.1| Zinc finger CCCH
           domain-containing protein [Medicago truncatula]
          Length = 594

 Score =  320 bits (819), Expect = 4e-85
 Identities = 175/261 (67%), Positives = 187/261 (71%), Gaps = 5/261 (1%)
 Frame = +3

Query: 189 MKRARKSNRVSWATGGNLCQVKLFLSEDYPSKVGQKSQDHLQAKTSSLSHSSTNECIDLP 368
           MKRARKSNRVSWA+  NLCQVKLFLSEDYPSKVG   QD L+AK SS+   STNE IDLP
Sbjct: 2   MKRARKSNRVSWASPANLCQVKLFLSEDYPSKVGLNLQDSLEAKASSMLCYSTNESIDLP 61

Query: 369 PGFESSHFLNQSKVEFSHISRIKWECPPLFVFRSRWQVAAGEESREKEDQKLREMRVLEA 548
           PGFES HF NQSKV+FSHI +IKWECP  FVF   W VAAG+ESREKE QKLRE+RVLEA
Sbjct: 62  PGFESGHFPNQSKVQFSHIPKIKWECPLSFVFSPNWLVAAGQESREKEVQKLREIRVLEA 121

Query: 549 VYPRLSAXXXXXXXXLDVEEEDYDDNITPLXXXXXXXXXXTMDILPELAVAANPHPNVQS 728
           VYPR SA        LDVEEE+YDDN TPL          +M  LPELA A N HPNVQ 
Sbjct: 122 VYPRPSAIPPSPSVSLDVEEEEYDDNSTPLIPIIPIEEEESMTNLPELAAAVNTHPNVQP 181

Query: 729 Q-----ISATTPISSDCNTSRPVSSDACLMPLAGVSPGSEADLXXXXXXXXXIMKSNEQG 893
           Q     +SATT ISSD N+SR VSSDA LMPLAGVS   EAD          I+KSNEQ 
Sbjct: 182 QNLHQHMSATTSISSDRNSSRTVSSDARLMPLAGVSSSLEADAAAASEVVAAILKSNEQA 241

Query: 894 SLIDMDLLVKIFNDPNMIEKL 956
            LIDMDLLVKI NDP MIE L
Sbjct: 242 GLIDMDLLVKILNDPKMIENL 262


>ref|XP_002310301.1| predicted protein [Populus trichocarpa] gi|222853204|gb|EEE90751.1|
           predicted protein [Populus trichocarpa]
          Length = 557

 Score =  208 bits (530), Expect = 1e-51
 Identities = 130/271 (47%), Positives = 156/271 (57%), Gaps = 15/271 (5%)
 Frame = +3

Query: 189 MKRARKSNRVSWATGGNLCQVKLFLSEDYPSKVGQKSQDHLQAKTSSLSH-SSTNECIDL 365
           MKR+RKSNRVSWA G  LCQV+LFLSED PS+VG + +D LQ   S L   SS+ +  DL
Sbjct: 1   MKRSRKSNRVSWAPGLYLCQVRLFLSEDCPSEVGGQVRDLLQKNASRLLPISSSKDSNDL 60

Query: 366 PPGFESSHFLNQSKVEFSHISRIKWECPPLFVFRSRWQVAAGEESREKEDQKLREMRVLE 545
           PPGFE +HFLN    E S I R++W+CPP FV    W V  GEES+E E QKLREMRVLE
Sbjct: 61  PPGFEGTHFLNPCIKELSCIPRVQWKCPPNFVVNYNWHVTDGEESQESEAQKLREMRVLE 120

Query: 546 AVYPRLSAXXXXXXXXLDVEEEDYDDNITPLXXXXXXXXXXTMDILPELAVAANPHPNVQ 725
           AVYPR S+        LDVEEE+YDD++TP+            ++ P L     P  N  
Sbjct: 121 AVYPRPSSVPPSPAVSLDVEEENYDDSLTPIIPLIPVEEEEAAEMPPAL---TEPLKNPT 177

Query: 726 SQISATTP---------ISSDCNT---SRPVSSDACL--MPLAGVSPGSEADLXXXXXXX 863
           + +S   P          SS CNT   + P S    L  +P  G  P + A         
Sbjct: 178 TSLSPALPPVLLSSGILNSSKCNTPALNPPASQKPELGRLPDPGTHPITAAS-----AAV 232

Query: 864 XXIMKSNEQGSLIDMDLLVKIFNDPNMIEKL 956
             IMKS EQG LID DLLVKIF DP M++KL
Sbjct: 233 TAIMKSKEQGGLIDTDLLVKIFRDPKMVDKL 263


>ref|XP_002327763.1| predicted protein [Populus trichocarpa] gi|222836848|gb|EEE75241.1|
           predicted protein [Populus trichocarpa]
          Length = 536

 Score =  208 bits (529), Expect = 2e-51
 Identities = 127/273 (46%), Positives = 152/273 (55%), Gaps = 16/273 (5%)
 Frame = +3

Query: 189 MKRARKSNRVSWATGGNLCQVKLFLSEDYPSKVGQKSQDHLQAKTSSLS-HSSTNECIDL 365
           MKR+ KSNRVSWA G NLCQ +LF+SED PSKVG + QDHLQ KTS L  HSS  E  D 
Sbjct: 1   MKRSSKSNRVSWAPGLNLCQERLFVSEDCPSKVGGQVQDHLQKKTSLLLLHSSGKEPNDF 60

Query: 366 PPGFESSHFLNQSKVEFSHISRIKWECPPLFVFRSRWQVAAGEESREKEDQKLREMRVLE 545
           PPGFE SHFLN  K E S   RI+W+CPP FV  S W V AGEES+E + QKLREMR LE
Sbjct: 61  PPGFEGSHFLNPCKKELSCFPRIQWKCPPKFVVSSNWHVTAGEESQESQAQKLREMRALE 120

Query: 546 AVYPRLSAXXXXXXXXLDVEEEDYDDNITPLXXXXXXXXXXTMDILPELAVAANPHPNVQ 725
           A YPR SA        LDVE+ DYDD++TP+            ++  +L       P   
Sbjct: 121 AFYPRPSAVPPSPVVSLDVEDTDYDDSLTPIIPLIPVEEEEATELPSDLT-----EPLKT 175

Query: 726 SQISATTPISSDCNTSRPVSSDACLMPLAG---------------VSPGSEADLXXXXXX 860
           SQ  A  P      T   ++S  C+ P +                 +PGS   +      
Sbjct: 176 SQSPALPPFLLSFGT---LNSSKCITPASNPLLSEKTAFGKLPNPPNPGSNL-ISAASAA 231

Query: 861 XXXIMKSNEQGSLIDMDLLVKIFNDPNMIEKLS 959
              IMK+   GSLID  LLVKI +DP MIE+L+
Sbjct: 232 VTAIMKNKGHGSLIDTGLLVKILSDPKMIEELA 264


>emb|CBI17393.3| unnamed protein product [Vitis vinifera]
          Length = 449

 Score =  189 bits (480), Expect = 8e-46
 Identities = 118/262 (45%), Positives = 149/262 (56%), Gaps = 6/262 (2%)
 Frame = +3

Query: 189 MKRARKSNRVSWATGGNLCQVKLFLSEDYPSKVGQKSQDHLQAKTSSLSHSSTNECIDLP 368
           MK ++ S +VSWA   NLCQ KLF S+D PS+V  K++D L AK S + HS   +   LP
Sbjct: 1   MKLSKSSKKVSWAPDANLCQAKLFRSKDCPSQVCLKARDGLLAKKSWILHSDGRDTNGLP 60

Query: 369 PGFESSHFLNQSKVEFSHISRIKWECPPLFVFRSRWQVAAGEESREKEDQKLREMRVLEA 548
            GF+ +  +NQSK + SHI +IKW+CPP FV  S W VA+GEES+E E QKLRE  V+EA
Sbjct: 61  HGFKDTR-VNQSKKKVSHIPKIKWKCPPKFVLSSNWLVASGEESQEAEAQKLRENHVVEA 119

Query: 549 VYPRLSAXXXXXXXXLDVEEEDYDDNITPLXXXXXXXXXXTMDILPELAVAAN----PHP 716
           VYPR+SA        LD+EE   DD   PL          T+D L +LA   N      P
Sbjct: 120 VYPRISAIPLSPSISLDIEECHQDDCDIPLVPITSMEDEGTVDTLFDLAAPINSSMISKP 179

Query: 717 NVQSQISATTPISSDCNTSRPVSSDACLMPLA-GVSPGSEAD-LXXXXXXXXXIMKSNEQ 890
              SQ    +  +S CN  RPV     +   A G+SP  EAD +         +M+  EQ
Sbjct: 180 PALSQDLLASGNTSQCN--RPVLEPPAIEKTALGLSPDVEADIIAAATAAITMVMRCKEQ 237

Query: 891 GSLIDMDLLVKIFNDPNMIEKL 956
           GSLID DLL+KI  +P M EKL
Sbjct: 238 GSLIDTDLLIKILTNPKMTEKL 259


Top