BLASTX nr result

ID: Glycyrrhiza23_contig00007842 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00007842
         (775 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003610228.1| RING finger-like protein [Medicago truncatul...   186   5e-45
gb|AFK34620.1| unknown [Medicago truncatula]                          181   1e-43
gb|AEQ20638.1| RING-H2 zinc finger protein [Manihot esculenta]        122   9e-26
ref|XP_004149098.1| PREDICTED: RING-H2 finger protein ATL56-like...   111   2e-22
dbj|BAH56864.1| AT2G18670 [Arabidopsis thaliana]                      109   6e-22

>ref|XP_003610228.1| RING finger-like protein [Medicago truncatula]
           gi|355511283|gb|AES92425.1| RING finger-like protein
           [Medicago truncatula]
          Length = 182

 Score =  186 bits (472), Expect = 5e-45
 Identities = 92/146 (63%), Positives = 99/146 (67%), Gaps = 2/146 (1%)
 Frame = -3

Query: 635 GDGE-PKPNPNLLSLFLKPIIMXXXXXXXXXXXXXXXXXXXXXXXXXXXFHRLRSRPAPT 459
           GD E PKPNPNLLSLFLKPIIM                            HRLR RP PT
Sbjct: 8   GDPEQPKPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLAGALHRLRFRPTPT 67

Query: 458 R-LSAPSGGFLPREINKLPHFRVSKGSAPGPDSHCVVCLDGFRNGQWCRKLAACGHVFHR 282
           R L + +  FLPREIN LP+FR++KGS   PDS C VCLDGFRNGQWCR LAACGHVFHR
Sbjct: 68  RRLQSLTDAFLPREINNLPNFRITKGSVSEPDSRCAVCLDGFRNGQWCRNLAACGHVFHR 127

Query: 281 RCVDTWLVKVAACPTCRTPVRLNPGT 204
           RC+DTWL+KVA CPTCRTPVR NP T
Sbjct: 128 RCIDTWLLKVATCPTCRTPVRSNPQT 153


>gb|AFK34620.1| unknown [Medicago truncatula]
          Length = 182

 Score =  181 bits (460), Expect = 1e-43
 Identities = 91/146 (62%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
 Frame = -3

Query: 635 GDGE-PKPNPNLLSLFLKPIIMXXXXXXXXXXXXXXXXXXXXXXXXXXXFHRLRSRPAPT 459
           GD E PKPNPNLLSLFLKPIIM                            HRLR RP PT
Sbjct: 8   GDPEQPKPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLAGALHRLRFRPTPT 67

Query: 458 R-LSAPSGGFLPREINKLPHFRVSKGSAPGPDSHCVVCLDGFRNGQWCRKLAACGHVFHR 282
           R L + +  FLPREIN LP+FR++KGS   PDS C VCLDGFRNGQW R LAACGHVFHR
Sbjct: 68  RRLQSLTDAFLPREINNLPNFRITKGSVSEPDSRCAVCLDGFRNGQWRRNLAACGHVFHR 127

Query: 281 RCVDTWLVKVAACPTCRTPVRLNPGT 204
           RC+DTWL+KVA CPTCRTPVR NP T
Sbjct: 128 RCIDTWLLKVATCPTCRTPVRSNPQT 153


>gb|AEQ20638.1| RING-H2 zinc finger protein [Manihot esculenta]
          Length = 174

 Score =  122 bits (306), Expect = 9e-26
 Identities = 68/158 (43%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
 Frame = -3

Query: 623 PKPNPNLLSLFLKPIIMXXXXXXXXXXXXXXXXXXXXXXXXXXXFHRLRSRPAPTRLSAP 444
           PK NP +LS+ LK IIM                              L +  A  R S P
Sbjct: 25  PKSNPKVLSMILKAIIMTAITTLFFLFLGVAAILL------------LLATAAFHRHSGP 72

Query: 443 SG---GFLPREINKLPHFRVSKGSAPGPDSHCVVCLDGFRNGQWCRKLAACGHVFHRRCV 273
           S    G  P+ + KLP F+ S+ + P  ++ CVVCL+G R GQWCRKL ACGHVFHR+C+
Sbjct: 73  SDSAVGLSPKGLKKLPQFKFSRRTKPEDEADCVVCLEGIRQGQWCRKLIACGHVFHRKCI 132

Query: 272 DTWLVKVAACPTCRTPVRLNPGTPDSVIDAPTDNFGLT 159
           D WL+KV+ACP CRT V L+ GT  +  D P   FG T
Sbjct: 133 DAWLIKVSACPVCRTRVWLDSGTLPA--DRPLWGFGWT 168


>ref|XP_004149098.1| PREDICTED: RING-H2 finger protein ATL56-like [Cucumis sativus]
           gi|449507961|ref|XP_004163179.1| PREDICTED: RING-H2
           finger protein ATL56-like [Cucumis sativus]
          Length = 178

 Score =  111 bits (278), Expect = 2e-22
 Identities = 58/138 (42%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
 Frame = -3

Query: 623 PKPNPNLLSLFLKPIIMXXXXXXXXXXXXXXXXXXXXXXXXXXXFHRLRS-RPAPTRLSA 447
           PKP   LLSL LK  IM                            HR R      ++ S 
Sbjct: 21  PKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLCVASALHRRRRFHSRHSQYSD 80

Query: 446 PSGGFLPREINKLPHFRVSKGSAPGPDSHCVVCLDGFRNGQWCRKLAACGHVFHRRCVDT 267
            S GF  R++ KL  FR S    P     C +CLDGFR GQWCR+L  CGHV+HR+C+D+
Sbjct: 81  SSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKGQWCRRLGGCGHVYHRKCIDS 140

Query: 266 WLVKVAACPTCRTPVRLN 213
           WLV+V+ACP CR  VRL+
Sbjct: 141 WLVRVSACPLCRRCVRLD 158


>dbj|BAH56864.1| AT2G18670 [Arabidopsis thaliana]
          Length = 173

 Score =  109 bits (273), Expect = 6e-22
 Identities = 59/137 (43%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
 Frame = -3

Query: 623 PKPNPNLLSLFLKPIIMXXXXXXXXXXXXXXXXXXXXXXXXXXXFHRLRSRPAPTRLSAP 444
           PKP   +LSLFL  +IM                            H  R R    R    
Sbjct: 15  PKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPLLLSSLHRHHRRRRR--NRRQES 72

Query: 443 SGGFLPREINKLPHFRVSKGSA-PGPDSHCVVCLDGFRNGQWCRKLAACGHVFHRRCVDT 267
           S G   R + KLP F+ S+ S     +S CVVC DGFR GQWCR L  CGHVFHR+CVDT
Sbjct: 73  SDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDT 132

Query: 266 WLVKVAACPTCRTPVRL 216
           WL+K + CP CR  VRL
Sbjct: 133 WLLKASTCPICRARVRL 149


Top