BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00007248
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08196.1| Polynucleotidyl transferase, Ribonuclease H fold ...    59   3e-07
ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    58   9e-07
ref|XP_002446679.1| hypothetical protein SORBIDRAFT_06g020406 [S...    57   1e-06
ref|XP_002447811.1| hypothetical protein SORBIDRAFT_06g016240 [S...    57   2e-06
ref|XP_002522901.1| conserved hypothetical protein [Ricinus comm...    57   2e-06

>gb|ABN08196.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 110

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 37/103 (35%), Positives = 51/103 (49%)
 Frame = +2

Query: 17  CCTLWSIWKSRNLVVFEGKPADPLDTMFRINLLLSDCELHIREEDFSTDSMPGNTSRVGK 196
           CC LWSIWK RN  V+ G     +  + R  +LL D       +  S  S   NT+   K
Sbjct: 11  CCILWSIWKQRNNKVWNGVIEAQVVVLERAKVLLQDWRAAKSYQQHS--SRIQNTADSSK 68

Query: 197 YWRPPVRGGLKINCDASYNKNSKRGHTGIIIRGESGEFITGLT 325
            W+ P  G  K N DAS++K+  +   GI IR ++G F+   T
Sbjct: 69  -WKKPTVGQYKCNIDASFSKHLNKVGIGICIRDDTGTFVLAKT 110


>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
 Frame = +2

Query: 26  LWSIWKSRNLVVFEGKPADPLDTMFRINLLLSDCELHIREEDFSTDSMPG-NTSRVGKYW 202
           LW +WK+RN +VF G+  +  + + R    L   E  IR E  S  + P  N S  G+ W
Sbjct: 364 LWRLWKNRNELVFRGREFNAQEVLRRAEDDLE--EWRIRTEAESCGTKPQVNRSSCGR-W 420

Query: 203 RPPVRGGLKINCDASYNKNSKRGHTGIIIRGESGE 307
           RPP    +K N DA++N++++R   G ++R E GE
Sbjct: 421 RPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGE 455


>ref|XP_002446679.1| hypothetical protein SORBIDRAFT_06g020406 [Sorghum bicolor]
           gi|241937862|gb|EES11007.1| hypothetical protein
           SORBIDRAFT_06g020406 [Sorghum bicolor]
          Length = 395

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 29/97 (29%), Positives = 50/97 (51%)
 Frame = +2

Query: 23  TLWSIWKSRNLVVFEGKPADPLDTMFRINLLLSDCELHIREEDFSTDSMPGNTSRVGKYW 202
           T W+IW++R   + EG    P   M  IN  + + ++ IR  +    +   +  +  + W
Sbjct: 182 TCWAIWQARRKAIHEGVFQSPFSIMVTINRQIEELQM-IRGMELKGGNQNQSKQKT-RLW 239

Query: 203 RPPVRGGLKINCDASYNKNSKRGHTGIIIRGESGEFI 313
           + P +G  KIN DA+ N+   +G  G++ R + GEFI
Sbjct: 240 KAPDQGKCKINVDAAVNRVGSKGAVGVVCRNDRGEFI 276


>ref|XP_002447811.1| hypothetical protein SORBIDRAFT_06g016240 [Sorghum bicolor]
           gi|241938994|gb|EES12139.1| hypothetical protein
           SORBIDRAFT_06g016240 [Sorghum bicolor]
          Length = 342

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 31/97 (31%), Positives = 45/97 (46%)
 Frame = +2

Query: 23  TLWSIWKSRNLVVFEGKPADPLDTMFRINLLLSDCELHIREEDFSTDSMPGNTSRVGKYW 202
           TLW+IW ++   V+E     PL T   +   +SD EL  +           N  +    W
Sbjct: 126 TLWAIWYAKRQAVYENSFQSPLSTHCFVKSFMSDLELVKQAAPPGASHQHQNAQKAP--W 183

Query: 203 RPPVRGGLKINCDASYNKNSKRGHTGIIIRGESGEFI 313
            PP  G +KIN DA+ +KNS +     + R  SG F+
Sbjct: 184 IPPPAGVMKINVDAAISKNSSKASASAVARDSSGMFV 220


>ref|XP_002522901.1| conserved hypothetical protein [Ricinus communis]
           gi|223537886|gb|EEF39501.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 382

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 31/100 (31%), Positives = 48/100 (48%)
 Frame = +2

Query: 29  WSIWKSRNLVVFEGKPADPLDTMFRINLLLSDCELHIREEDFSTDSMPGNTSRVGKYWRP 208
           W IWK+RN  VF G   DP DT  +      +C+  +   +    S P +  +    W+ 
Sbjct: 201 WFIWKARNSAVFNGVMPDPPDTWKKYQAFSFECD-SLSSHNSRLLSEPPSGGQEAMRWQC 259

Query: 209 PVRGGLKINCDASYNKNSKRGHTGIIIRGESGEFITGLTN 328
           P  G +K N D ++N NS+    G+I R    + I+G T+
Sbjct: 260 PALGTIKYNSDMAWNTNSQLACLGVIARDSRRKLISGKTD 299