BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00006879
         (1135 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I sub...   352   8e-95
gb|AFK41205.1| unknown [Lotus japonicus]                              337   3e-90
ref|XP_003595058.1| DNA-directed RNA polymerase I subunit rpa49 ...   279   8e-73
ref|XP_003595057.1| DNA-directed RNA polymerase I subunit rpa49 ...   279   8e-73
ref|XP_003625839.1| DNA-directed RNA polymerase I subunit rpa49 ...   275   1e-71

>ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like
           [Glycine max]
          Length = 424

 Score =  352 bits (904), Expect = 8e-95
 Identities = 185/283 (65%), Positives = 210/283 (74%)
 Frame = +1

Query: 1   KALEAADKEPAISTMEEMTPQQKAVKVRETTAIFGTXXXXXXXXXXXXXRQDDDLDSQKN 180
           K + A + EPA ST+EEMT QQK     ETT+I+GT             RQD+D DSQ+N
Sbjct: 146 KGVGAFENEPANSTLEEMTQQQKFA---ETTSIWGTKKDIEKAKKKLALRQDEDPDSQRN 202

Query: 181 LDXXXXXXXXXXXALESTESHVSRSVPPYDASAATPQEAYVLDKIILKGEWDYLEDIYNI 360
           LD           ALESTESHVSR++PPYDASA TPQEAY+LDKIILKGEWDYLEDIYN 
Sbjct: 203 LDVKMKSVTVNKKALESTESHVSRNIPPYDASATTPQEAYILDKIILKGEWDYLEDIYNN 262

Query: 361 LQQGEEADFSAYPNFICNRIQRXXXXXXXXXXXXXXCIFSYINHLIKFKDQHTMDGVFSA 540
           LQ+GEEADFSAYP F+ NRI+R              CIFSYINHLIKFKDQH+ D V SA
Sbjct: 263 LQRGEEADFSAYPTFVRNRIERLRKIKDESEKKQLSCIFSYINHLIKFKDQHSFD-VLSA 321

Query: 541 KDHKIPNILRHKFSSLFEVSVSKTLPAEKMILLISYVLVLTLFSDEFRTDYRDIAKDLKM 720
           K HKIPNILRHKFS++F VS SK LP EK+ LLI YVLVLTLFSDEFRTDY DIAKDL M
Sbjct: 322 KGHKIPNILRHKFSNMFAVSESKRLPPEKISLLICYVLVLTLFSDEFRTDYTDIAKDLSM 381

Query: 721 SHMRLRELYVHLGCKISCQNNASYATLPLPLKFPDLRQKKRRR 849
           + + +R+LY HLGCKIS Q N  YATLP+PLKFP+LRQ+KR+R
Sbjct: 382 NILPVRQLYEHLGCKISRQKNIFYATLPVPLKFPELRQRKRKR 424


>gb|AFK41205.1| unknown [Lotus japonicus]
          Length = 347

 Score =  337 bits (865), Expect = 3e-90
 Identities = 175/283 (61%), Positives = 204/283 (72%)
 Frame = +1

Query: 1   KALEAADKEPAISTMEEMTPQQKAVKVRETTAIFGTXXXXXXXXXXXXXRQDDDLDSQKN 180
           KALEA DKEPAIST+EE+TP   A+K R+TTA+ GT             RQ DD +SQKN
Sbjct: 65  KALEALDKEPAISTVEELTPADSALKQRQTTAMLGTKRDIERNRRKDALRQGDDPESQKN 124

Query: 181 LDXXXXXXXXXXXALESTESHVSRSVPPYDASAATPQEAYVLDKIILKGEWDYLEDIYNI 360
           L            ALESTE HVSR++PPYDASA TPQEAY+LDKII K EW+YLEDIY++
Sbjct: 125 LGEKVKDVAVNKEALESTEVHVSRNLPPYDASATTPQEAYILDKIIPKKEWEYLEDIYDM 184

Query: 361 LQQGEEADFSAYPNFICNRIQRXXXXXXXXXXXXXXCIFSYINHLIKFKDQHTMDGVFSA 540
           LQ GEEADFSAYP FI NRI R              CIFSY+NHLIKFKDQ TM GV SA
Sbjct: 185 LQLGEEADFSAYPTFISNRIARLKGIKDEAEKKKMSCIFSYLNHLIKFKDQRTMQGVSSA 244

Query: 541 KDHKIPNILRHKFSSLFEVSVSKTLPAEKMILLISYVLVLTLFSDEFRTDYRDIAKDLKM 720
           K HKIP ILR+KFSS+F  + S+ LP +++ LLI YVLVLTLFSDEFRTDY DI+KDL+M
Sbjct: 245 KSHKIPPILRYKFSSMFGATESRRLPNDELNLLICYVLVLTLFSDEFRTDYTDISKDLRM 304

Query: 721 SHMRLRELYVHLGCKISCQNNASYATLPLPLKFPDLRQKKRRR 849
           S + +R+ Y  LGCK   QN  SYATLP+PLKFPD +Q+KR+R
Sbjct: 305 SVLLVRQHYSDLGCKFLSQNKISYATLPVPLKFPDSKQRKRKR 347


>ref|XP_003595058.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
           gi|355484106|gb|AES65309.1| DNA-directed RNA polymerase
           I subunit rpa49 [Medicago truncatula]
          Length = 411

 Score =  279 bits (714), Expect = 8e-73
 Identities = 143/283 (50%), Positives = 189/283 (66%), Gaps = 1/283 (0%)
 Frame = +1

Query: 1   KALEAADKEPA-ISTMEEMTPQQKAVKVRETTAIFGTXXXXXXXXXXXXXRQDDDLDSQK 177
           K +E  +  P  I  +EEMT +Q A K R T A  GT             R D++ +++K
Sbjct: 124 KGVEYKEPPPTPIKMVEEMTAEQLAEKKRNTDAALGTKRSNKMHSRLADMRGDEEPEAKK 183

Query: 178 NLDXXXXXXXXXXXALESTESHVSRSVPPYDASAATPQEAYVLDKIILKGEWDYLEDIYN 357
           NLD           AL +TE+HV+R +PPY++SA TPQEAYVLDKIIL  EW+YL+DIY 
Sbjct: 184 NLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILAEEWNYLQDIYY 243

Query: 358 ILQQGEEADFSAYPNFICNRIQRXXXXXXXXXXXXXXCIFSYINHLIKFKDQHTMDGVFS 537
            LQ+   ADFS YP+FI NRI R              CI S+IN+L+KFKDQH+MDG+ S
Sbjct: 244 SLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKHSCILSFINYLVKFKDQHSMDGISS 303

Query: 538 AKDHKIPNILRHKFSSLFEVSVSKTLPAEKMILLISYVLVLTLFSDEFRTDYRDIAKDLK 717
           +K  K+P  L H+F+++F+V+ S+ LP EKM LLISYVLVLTLFSD+FRTDYRDIAKDL+
Sbjct: 304 SKFEKLPYTLHHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRTDYRDIAKDLR 363

Query: 718 MSHMRLRELYVHLGCKISCQNNASYATLPLPLKFPDLRQKKRR 846
           M+ + LR ++ HLGCK+      SYATLP+PL F  ++++KR+
Sbjct: 364 MTTLTLRPIFEHLGCKLISSQKVSYATLPIPLTFSQIKKRKRK 406


>ref|XP_003595057.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
           gi|217073572|gb|ACJ85146.1| unknown [Medicago
           truncatula] gi|355484105|gb|AES65308.1| DNA-directed RNA
           polymerase I subunit rpa49 [Medicago truncatula]
           gi|388522465|gb|AFK49294.1| unknown [Medicago
           truncatula]
          Length = 428

 Score =  279 bits (714), Expect = 8e-73
 Identities = 143/283 (50%), Positives = 189/283 (66%), Gaps = 1/283 (0%)
 Frame = +1

Query: 1   KALEAADKEPA-ISTMEEMTPQQKAVKVRETTAIFGTXXXXXXXXXXXXXRQDDDLDSQK 177
           K +E  +  P  I  +EEMT +Q A K R T A  GT             R D++ +++K
Sbjct: 141 KGVEYKEPPPTPIKMVEEMTAEQLAEKKRNTDAALGTKRSNKMHSRLADMRGDEEPEAKK 200

Query: 178 NLDXXXXXXXXXXXALESTESHVSRSVPPYDASAATPQEAYVLDKIILKGEWDYLEDIYN 357
           NLD           AL +TE+HV+R +PPY++SA TPQEAYVLDKIIL  EW+YL+DIY 
Sbjct: 201 NLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILAEEWNYLQDIYY 260

Query: 358 ILQQGEEADFSAYPNFICNRIQRXXXXXXXXXXXXXXCIFSYINHLIKFKDQHTMDGVFS 537
            LQ+   ADFS YP+FI NRI R              CI S+IN+L+KFKDQH+MDG+ S
Sbjct: 261 SLQKEVAADFSLYPSFIRNRINRLKKIEDDSEKKKHSCILSFINYLVKFKDQHSMDGISS 320

Query: 538 AKDHKIPNILRHKFSSLFEVSVSKTLPAEKMILLISYVLVLTLFSDEFRTDYRDIAKDLK 717
           +K  K+P  L H+F+++F+V+ S+ LP EKM LLISYVLVLTLFSD+FRTDYRDIAKDL+
Sbjct: 321 SKFEKLPYTLHHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRTDYRDIAKDLR 380

Query: 718 MSHMRLRELYVHLGCKISCQNNASYATLPLPLKFPDLRQKKRR 846
           M+ + LR ++ HLGCK+      SYATLP+PL F  ++++KR+
Sbjct: 381 MTTLTLRPIFEHLGCKLISSQKVSYATLPIPLTFSQIKKRKRK 423


>ref|XP_003625839.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
           gi|355500854|gb|AES82057.1| DNA-directed RNA polymerase
           I subunit rpa49 [Medicago truncatula]
          Length = 412

 Score =  275 bits (704), Expect = 1e-71
 Identities = 140/283 (49%), Positives = 188/283 (66%), Gaps = 1/283 (0%)
 Frame = +1

Query: 1   KALEAADKEPAISTM-EEMTPQQKAVKVRETTAIFGTXXXXXXXXXXXXXRQDDDLDSQK 177
           K +E  +  P  + M EE+T +Q   K R+  A  GT               D++ +++K
Sbjct: 125 KGVEYKEPTPTPTKMVEELTAEQWTEKKRKADAALGTKKSKQMLIWLDEMTADEEPEAKK 184

Query: 178 NLDXXXXXXXXXXXALESTESHVSRSVPPYDASAATPQEAYVLDKIILKGEWDYLEDIYN 357
           NLD           AL +TE+HV+R +PPY++SA TPQEAYVLDKIIL  EW+YL+DIY 
Sbjct: 185 NLDEKMKNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILADEWNYLQDIYY 244

Query: 358 ILQQGEEADFSAYPNFICNRIQRXXXXXXXXXXXXXXCIFSYINHLIKFKDQHTMDGVFS 537
            LQ+ E A+FS YP+FI NRI R              CI  +IN+L+KFKDQH+MDG+ S
Sbjct: 245 SLQKEEAANFSLYPSFIRNRINRLKKIEDDSEKKKLSCILLFINYLVKFKDQHSMDGISS 304

Query: 538 AKDHKIPNILRHKFSSLFEVSVSKTLPAEKMILLISYVLVLTLFSDEFRTDYRDIAKDLK 717
           +K  K+P  L H+F+++F+VS S+ LP EK+ LLISYVLVLTLFSD+FRTDYRDIAKDL+
Sbjct: 305 SKFEKLPYTLHHRFTAMFDVSESRRLPPEKLNLLISYVLVLTLFSDDFRTDYRDIAKDLR 364

Query: 718 MSHMRLRELYVHLGCKISCQNNASYATLPLPLKFPDLRQKKRR 846
           M+ + LR ++ HLGCK+      SYATLP+PL FP +RQ+K++
Sbjct: 365 MTTLTLRPIFEHLGCKLISSQKVSYATLPIPLTFPQIRQRKKK 407