BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00006814
         (1191 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...   207   3e-51
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...   187   3e-46
gb|AAD37019.2| putative non-LTR retrolelement reverse transcript...   172   1e-40
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   167   3e-40
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   163   5e-40

>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score =  207 bits (528), Expect = 3e-51
 Identities = 117/367 (31%), Positives = 184/367 (50%), Gaps = 7/367 (1%)
 Frame = +1

Query: 19   GHITWVITVVYASPRFAQRQEVWDDLARLAETTSEAWVILGDFNSILAEHERRGGSSNFS 198
            G   W+ + +YASP    R+E+W +L ++    +  W++ GDFN   +  ER G  S+  
Sbjct: 97   GDDPWLFSAIYASPDSTLRKELWRELEQIKNQYTGPWLLAGDFNETSSLCERNGSESSEM 156

Query: 199  IRGMQSFRRMMQECDLLDMGFQGSPFTWKHG---NLFQ--RLDRVLCNLQWRMRFQSAIV 363
             R  + F   ++   L+D+GF G   TW  G     F+  RLDR L N +W+++F   +V
Sbjct: 157  QRRCKDFANWIENNALIDLGFTGPAHTWSRGLSPTTFKSARLDRGLANSEWKLKFTEGVV 216

Query: 364  VHLPFFKSDHRVILVQMKXXXXXXXXXXXXXXLASWLTHDDFPNFLANAWPRNARWCDQV 543
             +LP  +SDH  IL+                  A+WL H  F  F+   W  +A     +
Sbjct: 217  RNLPKSQSDHCPILISTSGFAPVPRIIKPFRFQAAWLNHQVFCEFVRKNWNADAPIVPFL 276

Query: 544  VSLQGSVQEWNKTVFGNIFDRKRRLIKRLENVAHRLTMRPSIDLEIAQKRLWGEYXXXXX 723
             S    + +WNK  F NIF +K  L  R+  V   L+      L   + +L  E      
Sbjct: 277  KSFADKLNKWNKEEFYNIFRKKSELWARISGVQALLSTGRQNHLIKLEAKLRREMDIVLD 336

Query: 724  XXXXXWYQKSRSKWLLHGDRNTKFFHGVTTIRRRRNSFDMLQDAEGNWVGDPGNLETLVT 903
                 W+QKSR + +  GDRNT++FH  T IRR RN  DMLQ+ +G W+ +P  ++ +V 
Sbjct: 337  DEETLWFQKSRMEAICDGDRNTRYFHLSTVIRRSRNRIDMLQNNDGEWISNPMEVKAMVL 396

Query: 904  TYFRNLFTEEGGREGSCIM--GAFPILSNDELTMIEREVSKSDIFNVVNHMGAFKAPGPD 1077
             Y+++LF+E+  +   C +    FP ++ D+   + R +S+ ++   +  M  FKAPGPD
Sbjct: 397  GYWKHLFSEDSVQSNFCHLPRDFFPQITADDFEKMMRPLSEVEVTLALKSMKPFKAPGPD 456

Query: 1078 GLQAAFF 1098
            G Q  F+
Sbjct: 457  GFQPLFY 463


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1296

 Score =  187 bits (476), Expect(2) = 3e-46
 Identities = 119/375 (31%), Positives = 173/375 (46%), Gaps = 14/375 (3%)
 Frame = +1

Query: 16   KGHITWVITVVYASPRFAQRQEVWDDLARLAETTSEAWVILGDFNSILAEHERRGGSSNF 195
            +G      T +YASP ++ R  +W+ L  + +T +  W+++GDFN      E+RGG+  F
Sbjct: 95   RGAAITTCTCIYASPNYSMRPNLWNYLVNINDTITGPWMLIGDFNETHLPSEQRGGT--F 152

Query: 196  SIRGMQSFRRMMQECDLLDMGFQGSPFTWKHGN-----LFQRLDRVLCNLQWRMRFQSAI 360
                  +F   M  C+LLD+   G  FTW   N     L ++LDR + N+ WR+ F  A 
Sbjct: 153  HHNRAATFSNFMNNCNLLDLTTTGGRFTWHKNNNGIRILSKKLDRGMANVDWRLSFPEAF 212

Query: 361  VVHLPFFKSDHRVILVQMKXXXXXXXXXXXXXXLASWLTHDDFPNFLANAWPRNAR--WC 534
            V  L    SDH  +L++                 A+W+ H D+ N +  +W  +      
Sbjct: 213  VEVLCRLHSDHNPLLLRFGGLPLTRGPRPFRFE-AAWIDHYDYGNVVKRSWSTHTHNPTA 271

Query: 535  DQVVSLQGSVQEWNKTVFGNIFDRKRRLIKRLENVAHRLTMRPSIDLEIAQKRLWGEYXX 714
              +  ++ S+  +N  VFGNIF RK R+  RL+ V   L    S    + +K L  EY  
Sbjct: 272  SLIKVMENSII-FNHDVFGNIFQRKSRVEWRLKGVQSYLERVDSYRHTLLEKELQDEYNH 330

Query: 715  XXXXXXXXWYQKSRSKWLLHGDRNTKFFHGVTTIRRRRNSFDMLQDAEGNWVGDPGNLET 894
                    WYQKSR +W+  GD+NT FFH  T IRR+ N    LQ   G    D   L+ 
Sbjct: 331  ILFQEEMLWYQKSREQWVKLGDKNTAFFHAQTVIRRKWNKIHKLQLPNGISTSDSNILQE 390

Query: 895  LVTTYFRNLFTEEGGREGSCI-------MGAFPILSNDELTMIEREVSKSDIFNVVNHMG 1053
                YF+  F       GS I        G  P L +   T +   ++K ++F  +N M 
Sbjct: 391  EALKYFKKFFC------GSQIPYSRFFNEGRHPALDDTGKTSLTSPITKKEVFAALNSMK 444

Query: 1054 AFKAPGPDGLQAAFF 1098
             +KAPGPDG    FF
Sbjct: 445  PYKAPGPDGFHCIFF 459



 Score = 25.0 bits (53), Expect(2) = 3e-46
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 1091 LFFQSQWQVVGDSLCSLVLEIF 1156
            +FF+  W +VGD +  LV   F
Sbjct: 457  IFFKQYWHIVGDDVFHLVRSAF 478


>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 855

 Score =  172 bits (437), Expect = 1e-40
 Identities = 96/304 (31%), Positives = 151/304 (49%), Gaps = 5/304 (1%)
 Frame = +1

Query: 37   ITVVYASPRFAQRQEVWDDLARLAETTSEAWVILGDFNSILAEHERRGGSSNFSIRGMQS 216
            +  VYA+P  ++R  +W  L+R+ ++  E  +I+GD                        
Sbjct: 551  LLAVYAAPSVSRRSGLWSLLSRIVQSVDEP-IIVGD------------------------ 585

Query: 217  FRRMMQECDLLDMGFQGSPFTWKHGNL-----FQRLDRVLCNLQWRMRFQSAIVVHLPFF 381
                        MGF+G+ FTWK G +      +RLDRVLC  Q R+++Q A V HLPFF
Sbjct: 586  ------------MGFKGNKFTWKRGRVESTFVAKRLDRVLCRPQTRLKWQEASVTHLPFF 633

Query: 382  KSDHRVILVQMKXXXXXXXXXXXXXXLASWLTHDDFPNFLANAWPRNARWCDQVVSLQGS 561
             SDH  I +Q++               A+WLTH  F + L  +W         + +L+  
Sbjct: 634  ASDHAPIYIQLEPEVRSNPLRRPFRFEAAWLTHSGFKDLLQASWNTEGETPVALAALKSK 693

Query: 562  VQEWNKTVFGNIFDRKRRLIKRLENVAHRLTMRPSIDLEIAQKRLWGEYXXXXXXXXXXW 741
            +++WN+ VFG++  RK  L+  ++ V   L +  + +L   ++ L  E+          W
Sbjct: 694  LKKWNREVFGDVNRRKESLMNEIKVVQELLEINQTDNLLSKEEELIKEFDVVLEQEEVLW 753

Query: 742  YQKSRSKWLLHGDRNTKFFHGVTTIRRRRNSFDMLQDAEGNWVGDPGNLETLVTTYFRNL 921
            +QKSR KW+  GDRNTK+FH +T +RRRRN  +ML+  +G+WV     LE +   Y+  L
Sbjct: 754  FQKSREKWVELGDRNTKYFHTMTVVRRRRNRIEMLKADDGSWVSQQQELEKMAVDYYSRL 813

Query: 922  FTEE 933
            ++ E
Sbjct: 814  YSME 817


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  167 bits (424), Expect(2) = 3e-40
 Identities = 100/366 (27%), Positives = 171/366 (46%), Gaps = 15/366 (4%)
 Frame = +1

Query: 46   VYASPRFAQRQEVWDDLARLAETTSEAWVILGDFNSILAEHERRGGSSNFSIRGMQSFRR 225
            +Y       +   W  +  L +  +  W++ GDFN IL  HE++GG        M  FR 
Sbjct: 351  LYGDAHSETKHRTWTTMRGLIDNPTTPWLMAGDFNEILFSHEKQGGRMKAQ-SAMDEFRH 409

Query: 226  MMQECDLLDMGFQGSPFTWKH------GNLFQRLDRVLCNLQWRMRFQSAIVVHLPFFKS 387
             + +C L D+GF+G  FTW++      G + +RLDR + N +WR  F +A V++     S
Sbjct: 410  ALTDCGLDDLGFEGDAFTWRNHSHSQEGYIRERLDRAVANPEWRAMFPAARVINGDPRHS 469

Query: 388  DHRVILVQMKXXXXXXXXXXXXXXL---ASWLTHDDFPNFLANAWPRNARWCDQVV--SL 552
            DHR ++++++                  A+WL  + F   +  AW  +A      V  SL
Sbjct: 470  DHRPVIIELEGKNKGVRGRNGHNDFRFEAAWLEEEKFKEVVKEAWDVSAGLQGLPVHASL 529

Query: 553  QG---SVQEWNKTVFGNIFDRKRRLIKRLENVAHRLTMRPSIDLEIAQKRLWGEYXXXXX 723
             G    +  W+  V G++  R +++ K LE    +   R  +   + ++ L         
Sbjct: 530  AGVAAGLSSWSSNVLGDLEKRVKKVKKELETCRRQPISRDQV---VREEVLRYRLEKLEQ 586

Query: 724  XXXXXWYQKSRSKWLLHGDRNTKFFHGVTTIRRRRNSFDMLQDAEGNWVGDPGNLETLVT 903
                 W Q++ + WL  GDRNT FFH   + RRRRN  + L+  +G+WV    +   ++ 
Sbjct: 587  QVDIYWKQRAHTNWLNKGDRNTSFFHASCSERRRRNRINKLRREDGSWVEREEDKRAMII 646

Query: 904  TYFRNLFTEEGGREGSCIMGAFP-ILSNDELTMIEREVSKSDIFNVVNHMGAFKAPGPDG 1080
             +F+ LFT  GG+    ++      +S      +  E ++ ++   ++ +G  KAPGPDG
Sbjct: 647  EFFKQLFTSNGGQNSQKLLDVVDRKVSGAMNESLRAEFTREEVKEALDAIGDLKAPGPDG 706

Query: 1081 LQAAFF 1098
            + A F+
Sbjct: 707  MPAGFY 712



 Score = 25.0 bits (53), Expect(2) = 3e-40
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 1094 FFQSQWQVVGDSLCSLVLEIFR 1159
            F+++ W VVG+ +   VLE+ R
Sbjct: 711  FYKACWDVVGEKVTDEVLEVLR 732


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  163 bits (413), Expect(2) = 5e-40
 Identities = 102/365 (27%), Positives = 160/365 (43%), Gaps = 9/365 (2%)
 Frame = +1

Query: 31   WVITVVYASPRFAQRQEVWDDLARLAETTSEAWVILGDFNSILAEHERRGGSSNFSIRGM 210
            W  T +Y  P    + +    L+ LA  +   W+  GDFN +L   E++GG   F+ R  
Sbjct: 105  WRFTGIYGYPEEEHKDKTGALLSALARASRRPWLCGGDFNLMLVASEKKGGDG-FNSREA 163

Query: 211  QSFRRMMQECDLLDMGFQGSPFTWKHG-----NLFQRLDRVLCNLQWRMRFQSAIVVHLP 375
              FR  M+EC  +D+GF G  FTW +      N+ +RLDR + N  W+++F  + V HLP
Sbjct: 164  DIFRNAMEECHFMDLGFVGYEFTWTNNRGGDANIQERLDRFVANDLWKIKFPGSFVSHLP 223

Query: 376  FFKSDHRVILVQMKXXXXXXXXXXXXXXL---ASWLTHDDFPNFLANAWPRNARWCDQVV 546
              KSDH  I+  +K                  A WL   +    +   W R       + 
Sbjct: 224  KRKSDHVPIVASVKGAQSAATRTKKSKRFRFEAMWLREGESDEVVKETWMRGTDAGINLA 283

Query: 547  SLQGSVQEWNKTVFGNIFDRKRRLIKRLENVAHRLTMRPSIDLEIAQKRLWGEYXXXXXX 726
                 +  W+K  FG++    R    +++ +   +   PS D  +  + L          
Sbjct: 284  RTANKLLSWSKQKFGHVAKEIRMCQHQMKVL---MESEPSEDNIMHMRALDARMDELEKR 340

Query: 727  XXXXWYQKSRSKWLLHGDRNTKFFHGVTTIRRRRNSFDMLQDAEGNWVGDPGNLETLVTT 906
                W+Q+SR  W+  GD+NTKFFH   + R +RN+   +++  G W  D  ++      
Sbjct: 341  EEVYWHQRSRQDWIKSGDKNTKFFHQKASHREQRNNVRRIRNEAGEWFEDEDDVTECFAH 400

Query: 907  YFRNLFTEEGGREGSCIMGAFPILSNDEL-TMIEREVSKSDIFNVVNHMGAFKAPGPDGL 1083
            YF NLF      E   I+        DEL T ++    + ++   +  M   KAPGPDG+
Sbjct: 401  YFENLFQSGNNCEMDPILNIVKPQITDELGTQLDAPFRREEVSAALAQMHPNKAPGPDGM 460

Query: 1084 QAAFF 1098
             A F+
Sbjct: 461  NALFY 465



 Score = 28.5 bits (62), Expect(2) = 5e-40
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 1091 LFFQSQWQVVGDSLCSLVLEIFRNHEKVRDINQ 1189
            LF+Q  W  +G+ + + VL +  N + +  +NQ
Sbjct: 463  LFYQHFWDTIGEDVTTKVLNMLNNVDNIGAVNQ 495