BLASTX nr result
ID: Glycyrrhiza23_contig00006277
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Glycyrrhiza23_contig00006277
(3171 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003537204.1| PREDICTED: DNA-directed RNA polymerase I sub... 1857 0.0
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me... 1765 0.0
ref|XP_003518107.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1508 0.0
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni... 1489 0.0
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub... 1386 0.0
>ref|XP_003537204.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
max]
Length = 1653
Score = 1857 bits (4811), Expect = 0.0
Identities = 933/1057 (88%), Positives = 982/1057 (92%), Gaps = 2/1057 (0%)
Frame = -3
Query: 3166 SETINDDRSLGNGDTTDEEDITSLGTGNSDGKRHNKKNLKLSYKLAGQNTLSGSLLPSQV 2987
SET NDD SLG GDTTD EDITS GT KR +K KLSYKLA QN LSGSLLPSQV
Sbjct: 237 SETTNDDISLGGGDTTDVEDITSAGTA----KRDKRKKEKLSYKLAEQNKLSGSLLPSQV 292
Query: 2986 KGIIELLWENEAQLCSYISDIQGQGFGKKAGPSMFFLENVFVPPIKFRPPTKGGDNVMEH 2807
KGI+ELLWENEA+LCSYI+DIQ QGFGKKAG SMFFLEN+FVPPIKFRPPTKGGDNVMEH
Sbjct: 293 KGILELLWENEARLCSYINDIQDQGFGKKAGHSMFFLENIFVPPIKFRPPTKGGDNVMEH 352
Query: 2806 PQTVLLTKVLQSNIYLGDAHLNKSDSSKVLSQWMGLQQSVNLLFDNKTASGQ--KDVAPG 2633
PQTVLLTKVLQ NI LGDAHLNKSD SKVLS+WM LQQSVN+LFDNKTASG+ +DVA G
Sbjct: 353 PQTVLLTKVLQCNISLGDAHLNKSDPSKVLSRWMDLQQSVNMLFDNKTASGESKRDVATG 412
Query: 2632 ICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN 2453
ICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRL+YPERVTPWN
Sbjct: 413 ICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLSYPERVTPWN 472
Query: 2452 VIKLRNAILNGPESHPGATHYADKVSIVRLPPKGKLLSLTSRKLQSSRGVIMHHGKIHDN 2273
V+KLRNAILNGPESHPGATHYADKVSIV+LPPKGKLLSLTSRKL +SRGVI+H GKI D+
Sbjct: 473 VVKLRNAILNGPESHPGATHYADKVSIVKLPPKGKLLSLTSRKLPTSRGVILHQGKISDH 532
Query: 2272 ELEGKVVYRHLNDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDG 2093
E EGKVVYRHL DGD+VLVNRQPTLHKPSIMAH+VRVLKGEKTVRMHYANCSTYNADFDG
Sbjct: 533 EFEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHIVRVLKGEKTVRMHYANCSTYNADFDG 592
Query: 2092 DEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCE 1913
DEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLS E
Sbjct: 593 DEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSYE 652
Query: 1912 EFNQLLYSSGVSITGLGSFYGKPGQKVFMSNSESEMFMFPPAIWKPEPLWTGKQVISALL 1733
EFNQLLYSSGVS+ GLGSFYGK GQKVF+SNSESEMF+FPPAIWKPEPLWTGKQVISALL
Sbjct: 653 EFNQLLYSSGVSMAGLGSFYGKHGQKVFISNSESEMFLFPPAIWKPEPLWTGKQVISALL 712
Query: 1732 YYITRGHPPFTVEKNAKIPSNFFKTRKREGKNYTKNTSRKKDEPDEDKLLIYKNDLVRGV 1553
YYITRG PPFT EKNAKIPSNFFKT+ R+GK YT++TS+KKD+PDEDKLLIYKNDLVRGV
Sbjct: 713 YYITRGSPPFTAEKNAKIPSNFFKTQIRKGKRYTEDTSKKKDKPDEDKLLIYKNDLVRGV 772
Query: 1552 VDKAQFGDYGMVHTVQELYGSHTAGNLLSALSRLFTTFLQMHGFTCGVDDLLLTEGKDSE 1373
VDKAQFGDYGM+HTVQELYGS+ AGNLLSALSRLFTTFLQMHGFTCGVDDL+LTEGKD E
Sbjct: 773 VDKAQFGDYGMIHTVQELYGSNVAGNLLSALSRLFTTFLQMHGFTCGVDDLMLTEGKDVE 832
Query: 1372 RKNQLESCEEIGDIVHREFVGVVEGDNIDPMTLQLNIEKRIRSNGEAALTYLDRKIISNL 1193
R NQL+SCE IGD VHREF+GV DNIDP+TLQLNIEK+IRSNGEAALT LDRK+ SNL
Sbjct: 833 RMNQLKSCEIIGDSVHREFIGVKNSDNIDPVTLQLNIEKKIRSNGEAALT-LDRKMTSNL 891
Query: 1192 NSRTSSGVLKELLSEGILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPR 1013
NSRTSSG+LK+LLSEGILKPSGKN ISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPR
Sbjct: 892 NSRTSSGILKKLLSEGILKPSGKNCISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPR 951
Query: 1012 MVSGKTLPCFSPWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYL 833
MVSGKTLPCF PWDCSPRAGGFIIDRFLTAL PQEYYFHCMAGREGLVDTAVKTSRSGYL
Sbjct: 952 MVSGKTLPCFPPWDCSPRAGGFIIDRFLTALHPQEYYFHCMAGREGLVDTAVKTSRSGYL 1011
Query: 832 QRCLMKNLECLKVSYDHTVRDADGSIIQFHYGEDGVDVHQTSFITKFEALSTNKELVYSN 653
QRCLMKNLECLKV YDHTVRDADGSIIQFHYGEDGVDVHQTSFIT+F ALSTNKELV+SN
Sbjct: 1012 QRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFITEFGALSTNKELVFSN 1071
Query: 652 CCRQLDRSSPYINKLPDALKGKAENFIRDFSLKHTNSGSMKRADFLKLMEHKYVSSLAQP 473
CRQLDRSSPYINKLP+AL+GKAE F K N GSM++ADFL+LMEHKYVS LAQP
Sbjct: 1072 YCRQLDRSSPYINKLPEALEGKAEKF-----SKQRNLGSMEQADFLRLMEHKYVSCLAQP 1126
Query: 472 GEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAATHDIKTPFMTCP 293
GEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAA DIKTPFMTCP
Sbjct: 1127 GEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAAARDIKTPFMTCP 1186
Query: 292 LRPNKSMEDAICLADKLKKITVADIIKSMKVSVVPVAVRDGCICSIYKLVMKLYKPKHYP 113
LR +KSM+DAICLADKLKKITVADIIKSMKVSVVPV V G +CSIYKLVMKLYK K YP
Sbjct: 1187 LRHDKSMKDAICLADKLKKITVADIIKSMKVSVVPVTVLGGQVCSIYKLVMKLYKSKQYP 1246
Query: 112 KYTDITLDVWEETLRVGFVRELEDAIENHITLLSKIS 2
+YTDITLD WEETLRV FVRELEDAI+NH+TLLSKIS
Sbjct: 1247 EYTDITLDDWEETLRVNFVRELEDAIQNHMTLLSKIS 1283
>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1628
Score = 1765 bits (4572), Expect = 0.0
Identities = 882/1039 (84%), Positives = 951/1039 (91%)
Frame = -3
Query: 3118 DEEDITSLGTGNSDGKRHNKKNLKLSYKLAGQNTLSGSLLPSQVKGIIELLWENEAQLCS 2939
DEEDITS G GNS+G N LS KL Q++LSGSLLPSQV+ +I+LLW+NE++LCS
Sbjct: 237 DEEDITSGGAGNSNGN-----NQILSIKLVEQSSLSGSLLPSQVQEMIKLLWKNESRLCS 291
Query: 2938 YISDIQGQGFGKKAGPSMFFLENVFVPPIKFRPPTKGGDNVMEHPQTVLLTKVLQSNIYL 2759
+ISDIQ QGFGKKAG SMFFLEN+FVPPIKFRPP K GDNV EHPQTVLL+KVL+SNI L
Sbjct: 292 HISDIQDQGFGKKAGHSMFFLENIFVPPIKFRPPLKAGDNVAEHPQTVLLSKVLESNISL 351
Query: 2758 GDAHLNKSDSSKVLSQWMGLQQSVNLLFDNKTASGQKDVAPGICQLLEKKEGIFRQKMMG 2579
DAH KSD+ +L +W LQ SVNLLFDNKT+ + A GICQLL+KKEGIFRQKMMG
Sbjct: 352 ADAHRTKSDAYYILRRWQDLQGSVNLLFDNKTSLRSQKDASGICQLLDKKEGIFRQKMMG 411
Query: 2578 KRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVIKLRNAILNGPESHPGA 2399
KRVN+ACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWN KL +AILNGP++HPGA
Sbjct: 412 KRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNSAKLMDAILNGPDTHPGA 471
Query: 2398 THYADKVSIVRLPPKGKLLSLTSRKLQSSRGVIMHHGKIHDNELEGKVVYRHLNDGDIVL 2219
Y DK S +RL L S TSR+LQSSRGVIMHHGKIH++E EGKVVYRHL DGD+VL
Sbjct: 472 ILYTDKTSTLRLQKDKSLRSSTSRRLQSSRGVIMHHGKIHEHEFEGKVVYRHLKDGDVVL 531
Query: 2218 VNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAY 2039
VNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAY
Sbjct: 532 VNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAY 591
Query: 2038 NIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCEEFNQLLYSSGVSITGLGS 1859
NIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSC+EFNQLLYSSGVS+TG+GS
Sbjct: 592 NIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCQEFNQLLYSSGVSMTGMGS 651
Query: 1858 FYGKPGQKVFMSNSESEMFMFPPAIWKPEPLWTGKQVISALLYYITRGHPPFTVEKNAKI 1679
F KPGQKV MSNSESEMF+FPPAI+KPEPLWTGKQVISALL YIT+G PPFTVEKNAKI
Sbjct: 652 FSCKPGQKVLMSNSESEMFLFPPAIFKPEPLWTGKQVISALLCYITKGRPPFTVEKNAKI 711
Query: 1678 PSNFFKTRKREGKNYTKNTSRKKDEPDEDKLLIYKNDLVRGVVDKAQFGDYGMVHTVQEL 1499
PS+FFKT+ E K +TK+TSRKKDE EDKLLIY+NDLVRGVVDKAQFGDYGMVHTVQE
Sbjct: 712 PSSFFKTQTGEIKKHTKDTSRKKDEL-EDKLLIYRNDLVRGVVDKAQFGDYGMVHTVQEF 770
Query: 1498 YGSHTAGNLLSALSRLFTTFLQMHGFTCGVDDLLLTEGKDSERKNQLESCEEIGDIVHRE 1319
YGS+TAG LLSALSRLFT FLQMHGFTCGVDDLL+ GKDSER NQLESCEEIGDIVHRE
Sbjct: 771 YGSNTAGILLSALSRLFTNFLQMHGFTCGVDDLLIKVGKDSERLNQLESCEEIGDIVHRE 830
Query: 1318 FVGVVEGDNIDPMTLQLNIEKRIRSNGEAALTYLDRKIISNLNSRTSSGVLKELLSEGIL 1139
F+GV+E +NIDP+T+QLN+EK+IRSNGEAA+TYLDRK+ISNLNSRTSSGVLKELLS+G L
Sbjct: 831 FIGVMESENIDPITMQLNVEKKIRSNGEAAITYLDRKMISNLNSRTSSGVLKELLSKGSL 890
Query: 1138 KPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFSPWDCSPR 959
KPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCF WDCSPR
Sbjct: 891 KPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPCFPSWDCSPR 950
Query: 958 AGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVSYDHT 779
AGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLE LKV YDHT
Sbjct: 951 AGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVCYDHT 1010
Query: 778 VRDADGSIIQFHYGEDGVDVHQTSFITKFEALSTNKELVYSNCCRQLDRSSPYINKLPDA 599
VRD+DGSIIQFHYGEDGVDVHQTSFI KFEALS NKEL+YSNCCRQLDRSSPYINKLPDA
Sbjct: 1011 VRDSDGSIIQFHYGEDGVDVHQTSFINKFEALSINKELIYSNCCRQLDRSSPYINKLPDA 1070
Query: 598 LKGKAENFIRDFSLKHTNSGSMKRADFLKLMEHKYVSSLAQPGEPVGVLASQSVGEPATQ 419
LKGKAENFIRDFS K NS SMK ADFL++MEHKYVSSLAQPGEPVGVLASQSVGEPATQ
Sbjct: 1071 LKGKAENFIRDFSSKQRNSSSMKEADFLQVMEHKYVSSLAQPGEPVGVLASQSVGEPATQ 1130
Query: 418 MTLNTFHLAGRGEMNVTLGIPRLQEILMAATHDIKTPFMTCPLRPNKSMEDAICLADKLK 239
MTLNTFHLAGRGEMNVTLGIPRL EI++AA+ +IKTPFMTCPLRPNKSMEDAI LADK+K
Sbjct: 1131 MTLNTFHLAGRGEMNVTLGIPRLHEIVVAASKNIKTPFMTCPLRPNKSMEDAIRLADKMK 1190
Query: 238 KITVADIIKSMKVSVVPVAVRDGCICSIYKLVMKLYKPKHYPKYTDITLDVWEETLRVGF 59
KITVADII+SMKVSVVPVAV++G ICSIYKL MKL+KPKHYPKYTD+TL+ WEETLRVGF
Sbjct: 1191 KITVADIIESMKVSVVPVAVKEGRICSIYKLTMKLHKPKHYPKYTDVTLEDWEETLRVGF 1250
Query: 58 VRELEDAIENHITLLSKIS 2
VRELEDAIENHI+LL++IS
Sbjct: 1251 VRELEDAIENHISLLARIS 1269
>ref|XP_003518107.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA190-like [Glycine max]
Length = 1568
Score = 1508 bits (3904), Expect = 0.0
Identities = 779/959 (81%), Positives = 832/959 (86%), Gaps = 24/959 (2%)
Frame = -3
Query: 2806 PQTVLLTKVLQSNIYLGDAHLNKSDSSKVLSQWMGLQQSVNLLFDNKTASGQ--KDVAPG 2633
P ++ ++KVLQ NI LGDAHLNKSD SKVLS WM LQQSVN+LFDNKTASG+ +DVA G
Sbjct: 276 PFSLFISKVLQCNISLGDAHLNKSDPSKVLSWWMDLQQSVNMLFDNKTASGESKRDVATG 335
Query: 2632 ICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPER----- 2468
IC+LLEKKEGIFRQKMMGK V FACRSVISPDPYLAVNEIGIPPYFALRL+YPE
Sbjct: 336 ICRLLEKKEGIFRQKMMGKMVYFACRSVISPDPYLAVNEIGIPPYFALRLSYPEVRIVTR 395
Query: 2467 ----VTPWNVIKLRNAILNGPESHPGATHYADKVSIVRLPPKGKLLSLTSRKLQSSRGVI 2300
VTPWNV+KLRNAILNG ESHP A+HYADKVSIV+LPPKGK LSLTSRKL +SRGVI
Sbjct: 396 YHSIVTPWNVVKLRNAILNGAESHPSASHYADKVSIVKLPPKGKFLSLTSRKLPTSRGVI 455
Query: 2299 MHHGKIHDNELEGKVVYRHLNDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANC 2120
+H G+ D+E EGKVVYRHL DGD+VL NRQPTLHKPSIMAH+VRVLKGEKTVRMHYANC
Sbjct: 456 LHQGRXSDHEFEGKVVYRHLKDGDVVLANRQPTLHKPSIMAHIVRVLKGEKTVRMHYANC 515
Query: 2119 S-TYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALL 1943
S TYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALL
Sbjct: 516 SCTYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALL 575
Query: 1942 TKKDTFLSCEEFNQLLYSSGVSITGLGSFYGKPGQKVFMSNSESEMFMFPPAIWKP---- 1775
TKKDTFLS EEFNQLLYSSGVS+ GLGSFYGK GQKVFMSNSESEMF+FPPAIWKP
Sbjct: 576 TKKDTFLSYEEFNQLLYSSGVSMAGLGSFYGKHGQKVFMSNSESEMFLFPPAIWKPLXLS 635
Query: 1774 -----EPLWTGKQVISALLYYITRGHPPFTVEKNAKIPSNFFKTRKREGKNYTKNTSRKK 1610
L + VISALLYYITRG P FTVEKNAKIPSNFFKTR R+GK YT++TS+KK
Sbjct: 636 LFXCXNKLLSKXTVISALLYYITRGSPSFTVEKNAKIPSNFFKTRIRKGKRYTQDTSKKK 695
Query: 1609 DEPDEDKLLIYKNDLVRGVVDKAQFGDYGMVHTVQELYGSHTAGNLLSALSRLFTTFLQM 1430
++PDEDKLLIYKNDLVRG+VDKAQFGD GM+H VQELYGS+ AGNLLSALSRLFTTFLQM
Sbjct: 696 EKPDEDKLLIYKNDLVRGIVDKAQFGDXGMIHRVQELYGSNVAGNLLSALSRLFTTFLQM 755
Query: 1429 HGFTCGVDDLLLTEGKDSERKNQLESCEEIGDIVHREFVGVVEGDNIDPMTLQLNIEKRI 1250
HGFTCGVDDL+LTEGKD ER NQL SCE IG+ VHREF+ V DNID +TLQLNIEK+I
Sbjct: 756 HGFTCGVDDLMLTEGKDVERMNQLNSCEIIGNSVHREFIRVKNSDNIDSVTLQLNIEKKI 815
Query: 1249 RSNGEAALTYLDRKIISNLNSRTSSGVLKELLSEGILKPSGKNWISLMTTSGAKGSMVNF 1070
RSNGEA LT DRK+ + LNS TSSG+LKELLSEGIL+PSGKN ISLMTTSGAKGSMVNF
Sbjct: 816 RSNGEATLTS-DRKMTNKLNSTTSSGILKELLSEGILQPSGKNCISLMTTSGAKGSMVNF 874
Query: 1069 QQISSHLGQQELEGKRVPRMVSGKTLPCFSPWDCSPRAGGFIIDRFLTALRPQEYYFHCM 890
QQISSHLGQQELEGKRVPRMVSGKTLPCF PWDCSPRAGGFIIDRFLTAL PQEYYFHCM
Sbjct: 875 QQISSHLGQQELEGKRVPRMVSGKTLPCFPPWDCSPRAGGFIIDRFLTALHPQEYYFHCM 934
Query: 889 AGREGLVDTAVKTSRSGYLQRCLMKNLECLKVSYDHTVRDADGSIIQFHYGEDGVDVHQT 710
AG EGLVDTAVKTSRSGYLQRCLMKNLECLKV YDHTVRDADGSIIQFHYGEDGVDVHQT
Sbjct: 935 AGCEGLVDTAVKTSRSGYLQRCLMKNLECLKVCYDHTVRDADGSIIQFHYGEDGVDVHQT 994
Query: 709 S--FITKFEA-LSTNKELVYSNCCRQLDRSSPYINKLPDALKGKAENFIRDFSLKHTNSG 539
F+ + + NKELVYSN CRQLDRSSPYINKLPDAL+GKAE F K N G
Sbjct: 995 CLFFLENHKLHIQLNKELVYSNYCRQLDRSSPYINKLPDALEGKAEKF-----SKQRNLG 1049
Query: 538 SMKRADFLKLMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGI 359
SM+ ADF++L+EHKYVS L QPGEPVGVLASQSVGEPATQMT + H + NVTLGI
Sbjct: 1050 SMEHADFVRLIEHKYVSCLTQPGEPVGVLASQSVGEPATQMTXDFLH-SFHXWSNVTLGI 1108
Query: 358 PRLQEILMAATHDIKTPFMTCPLRPNKSMEDAICLADKLKKITVADIIKSMKVSVVPVAV 179
P LQEILMAA DIKTPFMTCPLR KSM+DAICLAD LKKITVADIIKSMKVSVVPV V
Sbjct: 1109 PCLQEILMAAARDIKTPFMTCPLRHEKSMKDAICLADXLKKITVADIIKSMKVSVVPVTV 1168
Query: 178 RDGCICSIYKLVMKLYKPKHYPKYTDITLDVWEETLRVGFVRELEDAIENHITLLSKIS 2
G ICSIYKLVMKLYK K YP+YTDITL+ WEETLRV FVRELEDAIENH+ LLSKIS
Sbjct: 1169 LGGQICSIYKLVMKLYKSKQYPEYTDITLEDWEETLRVNFVRELEDAIENHMALLSKIS 1227
>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
polymerase I largest subunit, putative [Ricinus communis]
Length = 1686
Score = 1489 bits (3856), Expect = 0.0
Identities = 740/1052 (70%), Positives = 875/1052 (83%), Gaps = 11/1052 (1%)
Frame = -3
Query: 3124 TTDEEDITSLGTGNSDGKRHNKKNLKLSYKLAGQ-NTLSGSLLPSQVKGIIELLWENEAQ 2948
TTD ED G +S K+H KK K + Q +T S LLPS+VK +ELLW+NEA+
Sbjct: 254 TTDVEDAAEPGDQHSGTKKHKKKERKEVLEFTRQKSTFSKQLLPSEVKEKLELLWKNEAR 313
Query: 2947 LCSYISDIQGQGFGK-KAGPSMFFLENVFVPPIKFRPPTKGGDNVMEHPQTVLLTKVLQS 2771
+CS+ISD+Q Q FGK KAGP+MFFLE + VPPIKFRPPTKGGD+VMEHPQTVLL+KVLQS
Sbjct: 314 ICSFISDLQQQEFGKRKAGPAMFFLETILVPPIKFRPPTKGGDSVMEHPQTVLLSKVLQS 373
Query: 2770 NIYLGDAHLNKSDSSKVLSQWMGLQQSVNLLFDNKTASG--QKDVAPGICQLLEKKEGIF 2597
NI LGDAH+NK + SK++ +W+ LQQS+N LFD+KTA G Q++ APGICQLLEKKEG+F
Sbjct: 374 NISLGDAHINK-EHSKIVRRWLDLQQSINTLFDSKTAKGPGQREGAPGICQLLEKKEGLF 432
Query: 2596 RQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVIKLRNAILNGP 2417
RQKMMGKRVN+ACRSVISPDPY+ VNEIGIPP FA++LTYPERVTPWN+ KLRNA++NG
Sbjct: 433 RQKMMGKRVNYACRSVISPDPYIGVNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVINGS 492
Query: 2416 ESHPGATHYADKVSIVRLPPKGKLLSLTSRKLQSSRGVIMHHGKIHDNELEGKVVYRHLN 2237
E HPGATHY DK+SI +LPP K SRKL SSRG + GK + E EGK+VYRHL
Sbjct: 493 ECHPGATHYVDKLSINKLPPARKARISISRKLPSSRGAVTQAGKGSECEFEGKIVYRHLQ 552
Query: 2236 DGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCS-TYNADFDGDEINVHFPQDE 2060
DGD+VLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANCS TYNADFDGDE+NVHFPQDE
Sbjct: 553 DGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSITYNADFDGDEMNVHFPQDE 612
Query: 2059 ISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCEEFNQLLYSSGV 1880
+SRAEAYNIVNANNQ+V+P++G+P+R LIQDHIVSA LLTKKDTFLS +EFNQLLYSSGV
Sbjct: 613 VSRAEAYNIVNANNQFVRPSNGEPLRGLIQDHIVSAVLLTKKDTFLSQDEFNQLLYSSGV 672
Query: 1879 SITGLGSFYGKPGQKVFMSNSESEMFMFPPAIWKPEPLWTGKQVISALLYYITRGHPPFT 1700
S G SF+G+PGQKV S SE E+ PPAIWKP+PLWTGKQVI+A+L +IT HPPFT
Sbjct: 673 STVGPNSFHGRPGQKVLWSRSEDEIQTLPPAIWKPKPLWTGKQVITAILNHITSDHPPFT 732
Query: 1699 VEKNAKIPSNFFKTRKREGKNYTKNTSRK----KDEPDEDKLLIYKNDLVRGVVDKAQFG 1532
VEK+AKIPSNFFK+R E K + S K + EPDE+K+L+YKN+LVRGV+DK QFG
Sbjct: 733 VEKDAKIPSNFFKSRANEDKPCQEEKSDKDAPAEKEPDEEKMLVYKNELVRGVIDKGQFG 792
Query: 1531 DYGMVHTVQELYGSHTAGNLLSALSRLFTTFLQMHGFTCGVDDLLLTEGKDSERKNQLES 1352
+YG+VHTV EL GSHTAG LLS LSRLFT +LQMHGFTCGVDDLL+ KD ERK QLE
Sbjct: 793 EYGLVHTVHELLGSHTAGILLSVLSRLFTAYLQMHGFTCGVDDLLILTNKDEERKKQLEW 852
Query: 1351 CEEIGDIVHREFVGVV-EGDNIDPMTLQLNIEKRIRSNGEAALTYLDRKIISNLNSRTSS 1175
CE+ G+ VHR F+G+ E IDP+ +QLNIEK IRS+G++AL YLDR++ + LN++TSS
Sbjct: 853 CEKSGEAVHRNFIGIKDEKIKIDPVAMQLNIEKTIRSDGDSALAYLDRQMSNELNTKTSS 912
Query: 1174 GVLKELLSEGILKPSGKNWISLMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKT 995
GV+ LLS+G+LKPSGKN ISLMTTSGAKGS VNFQQISS LGQQELEGKRVPRMVSGKT
Sbjct: 913 GVISNLLSDGLLKPSGKNCISLMTTSGAKGSKVNFQQISSFLGQQELEGKRVPRMVSGKT 972
Query: 994 LPCFSPWDCSPRAGGFIIDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMK 815
LPCF PWD + R+GG+I DRFLT LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+K
Sbjct: 973 LPCFHPWDWAARSGGYITDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIK 1032
Query: 814 NLECLKVSYDHTVRDADGSIIQFHYGEDGVDVHQTSFITKFEALSTNKELVYSNCCRQLD 635
NLECLK+ YDHTVRDADGS++QF+YGEDGVDVHQTSFI KF+ L+ N++++Y QL
Sbjct: 1033 NLECLKIGYDHTVRDADGSVVQFYYGEDGVDVHQTSFIAKFKELALNQDMIYKRSGGQLG 1092
Query: 634 RSSPYINKLPDALKGKAENFIRDFSLK-HTNSGSMKRADFLKLMEHKYVSSLAQPGEPVG 458
+ YI++LP+ALK KA+ F+ DFS+ S +KR D LM+ K++ SLAQPGEPVG
Sbjct: 1093 AFNSYISELPEALKEKADRFLDDFSIMGRIASNLVKREDLYNLMKQKFLLSLAQPGEPVG 1152
Query: 457 VLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEILMAATHDIKTPFMTCPLRPNK 278
VLA+QSVGEP+TQMTLNTFHLAGRGEMNVTLGIPRLQEILM A+ DIKTP MTCPL+ +
Sbjct: 1153 VLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTASIDIKTPIMTCPLQEGR 1212
Query: 277 SMEDAICLADKLKKITVADIIKSMKVSVVPVAVRDGCICSIYKLVMKLYKPKHYPKYTDI 98
+ EDA LADKL+K+TVADI++SM+VSVVP A++DG +C IYKL MKLY+P HYP+Y +I
Sbjct: 1213 TNEDADHLADKLRKVTVADIVESMEVSVVPFAIQDGGVCRIYKLKMKLYRPAHYPQYANI 1272
Query: 97 TLDVWEETLRVGFVRELEDAIENHITLLSKIS 2
+++ WEETL V F+RELEDAI+NH+ LLS+IS
Sbjct: 1273 SVEDWEETLEVVFLRELEDAIQNHMFLLSRIS 1304
>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
vinifera]
Length = 1740
Score = 1386 bits (3587), Expect = 0.0
Identities = 721/1075 (67%), Positives = 849/1075 (78%), Gaps = 21/1075 (1%)
Frame = -3
Query: 3163 ETINDDRSLGNGDTTDEEDITSLGTGNSDG------KRHNKKNLKLSYKLAGQNTL-SGS 3005
E +ND G+G TDE T +DG KR +K + + Q + SG
Sbjct: 307 ENVNDMFPWGDGVDTDE---THSSIAPTDGIQDTVTKRLERKGAQAPIEFIKQKSFFSGP 363
Query: 3004 LLPSQVKGIIELLWENEAQLCSYISDIQGQGFG---KKAGPSMFFLENVFVPPIKFRPPT 2834
LLPS+V+ I+E LWENEA+LCS+ISDI + G KAG SMFFLE + VPPIKFRPP+
Sbjct: 364 LLPSEVRDIMERLWENEAELCSFISDILQERLGASGNKAGYSMFFLETILVPPIKFRPPS 423
Query: 2833 KGGDNVMEHPQTVLLTKVLQSNIYLGDAHLNKSDSSKVLSQWMGLQQSVNLLFDNKTASG 2654
KG +VMEHPQTVLL KVLQ+NI LG+AH N S+ SK++S+WM LQQS+N+LFD KTA+G
Sbjct: 424 KGQISVMEHPQTVLLGKVLQANIALGNAHANNSERSKIISRWMDLQQSINVLFDGKTAAG 483
Query: 2653 Q--KDVAPGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLT 2480
Q +D GICQLLEKKEG+FRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLT
Sbjct: 484 QGQRDTGSGICQLLEKKEGVFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLT 543
Query: 2479 YPERVTPWNVIKLRNAILNGPESHPGATHYADKVSIVRLPPKGKLLSLTSRKLQSSRGVI 2300
YPE+VTPWNV+KLR+AI+NGPE HPGATHY DK+S V+L K+ SRKL SSRGV+
Sbjct: 544 YPEKVTPWNVVKLRDAIINGPEIHPGATHYVDKLSTVKLAVNKKMRISISRKLPSSRGVV 603
Query: 2299 MHHGKIHDNELEGKVVYRHLNDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANC 2120
G+ DNE EGK+VYRHL DGDIVLVNRQPTLHKPSIMAHVVRVLKGEKT+RMHYANC
Sbjct: 604 AQPGRSSDNEFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC 663
Query: 2119 STYNADFDGDEINVHFPQDEISRAEAYNIVNANNQYVKPTSGDPIRALIQDHIVSAALLT 1940
STYNADFDGDE+NVHFPQDEISRAEAYNIVNANNQY+ P+ GDPIR LIQDHIVSA LLT
Sbjct: 664 STYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYIVPSRGDPIRGLIQDHIVSAVLLT 723
Query: 1939 KKDTFLSCEEFNQLLYSSGVSITGLGSFYGKPGQKVFMSNSESEMFMFPPAIWKPEPLWT 1760
KKDTFL+ E++NQLLYSSG+S +G GSF GKPG+KV + +SE EM PAIWKPEPLW+
Sbjct: 724 KKDTFLTREQYNQLLYSSGLS-SGSGSFIGKPGKKVSVLDSEDEMQPLLPAIWKPEPLWS 782
Query: 1759 GKQVISALLYYITRGHPPFTVEKNAKIPSNFFKT---RKREGKNYTKNTSRKKD-----E 1604
GKQVI+A+L +ITRG PFT EK+ KIP +F + K+ GK + R+K+ +
Sbjct: 783 GKQVITAVLNHITRGRKPFTTEKDGKIPREYFGSEIDEKKSGKGKDPGSDRRKEKRIEKK 842
Query: 1603 PDEDKLLIYKNDLVRGVVDKAQFGDYGMVHTVQELYGSHTAGNLLSALSRLFTTFLQMHG 1424
E KLLI+KN+LVRGV+DKAQF YG+VH VQELYGS+TAG LLS LSRLFT FLQMHG
Sbjct: 843 HGEYKLLIHKNELVRGVIDKAQFDKYGLVHMVQELYGSNTAGILLSVLSRLFTVFLQMHG 902
Query: 1423 FTCGVDDLLLTEGKDSERKNQLESCEEIGDIVHREFVGVVEGDNIDPMTLQLNIEKRIRS 1244
FTCGVDDLL++ D RK +L+ E IG++VH +F+G G IDP+ LQ+ +EK I S
Sbjct: 903 FTCGVDDLLISPNYDIARKIELDKSENIGELVHCKFIGSNHG-KIDPVKLQVEVEKIILS 961
Query: 1243 NGEAALTYLDRKIISNLNSRTSSGVLKELLSEGILKPSGKNWISLMTTSGAKGSMVNFQQ 1064
NGEAA+T LDR + + LN TS V K+LL +G++KP KN +SLMTT+GAKGS VNF Q
Sbjct: 962 NGEAAITRLDRMMKNELNELTSK-VNKDLLLKGLVKPFPKNCLSLMTTTGAKGSTVNFSQ 1020
Query: 1063 ISSHLGQQELEGKRVPRMVSGKTLPCFSPWDCSPRAGGFIIDRFLTALRPQEYYFHCMAG 884
ISS LGQQ+LEGKRVPRMVSGKTLPCF PWDC+ RAGGFI DRFLT L PQEYYFHCMAG
Sbjct: 1021 ISSFLGQQDLEGKRVPRMVSGKTLPCFPPWDCAARAGGFISDRFLTGLHPQEYYFHCMAG 1080
Query: 883 REGLVDTAVKTSRSGYLQRCLMKNLECLKVSYDHTVRDADGSIIQFHYGEDGVDVHQTSF 704
REGLVDTAVKTSRSGYLQRCL+KNLECLKV YD+TVRD+DGSI+QF+YG+DGVDVHQTSF
Sbjct: 1081 REGLVDTAVKTSRSGYLQRCLIKNLECLKVCYDYTVRDSDGSIVQFNYGDDGVDVHQTSF 1140
Query: 703 ITKFEALSTNKELVYSNCCRQLDRSSPYINKLPDALKGKAENFIRDFSLKHTNSGSMKR- 527
IT+FEAL+ N+E+V Q + + YI KLP L+ K + FI F + + +MK+
Sbjct: 1141 ITEFEALAVNEEVVCEK-FGQDGKFNGYIQKLPKELRKKTKKFIEGFMEERQDFDNMKKQ 1199
Query: 526 ADFLKLMEHKYVSSLAQPGEPVGVLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQ 347
DF+ L++ KY+SSLAQPGEPVGVLA+QSVGEP+TQMTLNTFHLAGRGE+NVTLGIPRLQ
Sbjct: 1200 KDFVNLVKQKYISSLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEVNVTLGIPRLQ 1259
Query: 346 EILMAATHDIKTPFMTCPLRPNKSMEDAICLADKLKKITVADIIKSMKVSVVPVAVRDGC 167
EILM A +DIKTP MTCPL+ +S +DA LA KLKK+TVADI +SM+VS+VP V+D
Sbjct: 1260 EILMTAANDIKTPIMTCPLQMGRSKDDAERLAAKLKKVTVADITESMEVSIVPFTVQDHQ 1319
Query: 166 ICSIYKLVMKLYKPKHYPKYTDITLDVWEETLRVGFVRELEDAIENHITLLSKIS 2
CSIYKL MKLY+P YP +T I+L+ EETL FVRELEDAI+NH+ LLSKIS
Sbjct: 1320 TCSIYKLKMKLYEPALYPPHTGISLEDCEETLEAVFVRELEDAIQNHLLLLSKIS 1374