BLASTX nr result

ID: Glycyrrhiza23_contig00005543 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00005543
         (1167 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003520224.1| PREDICTED: uncharacterized protein LOC100795...   223   7e-56
ref|XP_003536302.1| PREDICTED: uncharacterized protein LOC100790...   220   6e-55
gb|AFK36549.1| unknown [Lotus japonicus]                              201   4e-49
ref|XP_002270246.1| PREDICTED: uncharacterized protein LOC100263...   171   2e-40
ref|XP_002304170.1| predicted protein [Populus trichocarpa] gi|2...   169   2e-39

>ref|XP_003520224.1| PREDICTED: uncharacterized protein LOC100795821 [Glycine max]
          Length = 206

 Score =  223 bits (568), Expect = 7e-56
 Identities = 120/213 (56%), Positives = 124/213 (58%)
 Frame = +2

Query: 68  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLXX 247
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 248 XXXXXXXXXXYNHLMVQXXXXXXXXXXXXXXXXGGAQVPGSQXXXXXXXXXXXXXXXXAP 427
                     YNHLMVQ                G AQ+PGSQ                AP
Sbjct: 61  AAAFQQVGVAYNHLMVQRPNLPPVLPPPRLPIPGNAQIPGSQPLMPGMRPPVFPRPPGAP 120

Query: 428 GYVXXXXXXXXXXXXXXXXXXGQPNTMPGQXXXXXXXXXXXXXXXXXGSTAMPASNGAPS 607
           GYV                  GQ NT+P                   GSTA PASNGAPS
Sbjct: 121 GYVSAPTMPPMLPPPGAPQAPGQLNTIP-------RPPSLAPPPAVPGSTAAPASNGAPS 173

Query: 608 MSSSGMYQANPSAPSPGGYDNYNANAQAPEGNH 706
           M SS MYQANP APS G YDNYNA+AQAPEGNH
Sbjct: 174 MVSSAMYQANPPAPSSGSYDNYNASAQAPEGNH 206


>ref|XP_003536302.1| PREDICTED: uncharacterized protein LOC100790892 [Glycine max]
          Length = 206

 Score =  220 bits (560), Expect = 6e-55
 Identities = 118/213 (55%), Positives = 122/213 (57%)
 Frame = +2

Query: 68  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLXX 247
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 248 XXXXXXXXXXYNHLMVQXXXXXXXXXXXXXXXXGGAQVPGSQXXXXXXXXXXXXXXXXAP 427
                     YNHLMVQ                G AQ+PG Q                AP
Sbjct: 61  AAAFQQVGVAYNHLMVQRPNLPPVLPPPRLPIPGNAQIPGGQPLMQGMRPPVFPRPPGAP 120

Query: 428 GYVXXXXXXXXXXXXXXXXXXGQPNTMPGQXXXXXXXXXXXXXXXXXGSTAMPASNGAPS 607
           GYV                  GQ NT+P                   GSTA PASNGAPS
Sbjct: 121 GYVSAHTMPPMLPPPGAPQVPGQLNTIP-------RPPSLAPPPTVPGSTATPASNGAPS 173

Query: 608 MSSSGMYQANPSAPSPGGYDNYNANAQAPEGNH 706
           M SS MYQANP APS G YDNYN +AQAPEGNH
Sbjct: 174 MVSSAMYQANPPAPSSGSYDNYNTSAQAPEGNH 206


>gb|AFK36549.1| unknown [Lotus japonicus]
          Length = 192

 Score =  201 bits (510), Expect = 4e-49
 Identities = 114/215 (53%), Positives = 120/215 (55%), Gaps = 2/215 (0%)
 Frame = +2

Query: 68  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLXX 247
           MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRNYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 248 XXXXXXXXXXYNHLMV--QXXXXXXXXXXXXXXXXGGAQVPGSQXXXXXXXXXXXXXXXX 421
                     YNHLMV                   G  Q+PG Q                
Sbjct: 61  AAAFQQVGVAYNHLMVPRPGGPPLLPMPQPRFPMPGNVQMPGGQ--------------PL 106

Query: 422 APGYVXXXXXXXXXXXXXXXXXXGQPNTMPGQXXXXXXXXXXXXXXXXXGSTAMPASNGA 601
            PG                    G P+ +PGQ                 GSTA PASNGA
Sbjct: 107 MPG--------MRPLMPLPRPVPGAPH-VPGQLNAIPRPPSFAPPTTAPGSTAAPASNGA 157

Query: 602 PSMSSSGMYQANPSAPSPGGYDNYNANAQAPEGNH 706
           PSM SS MYQ NPSAPS GGYDNYNANAQAP+GNH
Sbjct: 158 PSMVSSAMYQPNPSAPSSGGYDNYNANAQAPDGNH 192


>ref|XP_002270246.1| PREDICTED: uncharacterized protein LOC100263028 [Vitis vinifera]
           gi|363805533|sp|F6HQ26.1|RU1C_VITVI RecName: Full=U1
           small nuclear ribonucleoprotein C; Short=U1 snRNP C;
           Short=U1-C; Short=U1C
          Length = 213

 Score =  171 bits (434), Expect = 2e-40
 Identities = 99/219 (45%), Positives = 110/219 (50%), Gaps = 6/219 (2%)
 Frame = +2

Query: 68  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLXX 247
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 248 XXXXXXXXXXYNHLMVQ-----XXXXXXXXXXXXXXXXGGAQVP-GSQXXXXXXXXXXXX 409
                     YN  +V                      G A +P  S             
Sbjct: 61  TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120

Query: 410 XXXXAPGYVXXXXXXXXXXXXXXXXXXGQPNTMPGQXXXXXXXXXXXXXXXXXGSTAMPA 589
               APGY+                  G P+                      GST+ P 
Sbjct: 121 PVPGAPGYM------PAPGMPSMMAPPGAPSMPMPPLNSLPRPPTMNVPPAVPGSTSTPT 174

Query: 590 SNGAPSMSSSGMYQANPSAPSPGGYDNYNANAQAPEGNH 706
           S GAPSM +  MYQANP+ P+ GG+D++N NAQ PE NH
Sbjct: 175 SGGAPSMMTQPMYQANPAGPTSGGFDSFNINAQGPEANH 213


>ref|XP_002304170.1| predicted protein [Populus trichocarpa] gi|222841602|gb|EEE79149.1|
           predicted protein [Populus trichocarpa]
          Length = 202

 Score =  169 bits (427), Expect = 2e-39
 Identities = 100/215 (46%), Positives = 112/215 (52%), Gaps = 2/215 (0%)
 Frame = +2

Query: 68  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLXX 247
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQS+IDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSIIDQRIKEHLGQ 60

Query: 248 XXXXXXXXXXYN-HLMVQXXXXXXXXXXXXXXXXGGAQV-PGSQXXXXXXXXXXXXXXXX 421
                     YN HLMVQ                  A + PG +                
Sbjct: 61  TAAFQQVGAAYNQHLMVQRPRLPVLPTPVMPIGGNNAPLFPGMR------PPVLPRPMPG 114

Query: 422 APGYVXXXXXXXXXXXXXXXXXXGQPNTMPGQXXXXXXXXXXXXXXXXXGSTAMPASNGA 601
           APGY+                  G P ++PGQ                 GSTA P  +G 
Sbjct: 115 APGYM------NPPMMPPMMAPPGAP-SLPGQMNGIPRPPTMIAQPNVPGSTAAPTPSGP 167

Query: 602 PSMSSSGMYQANPSAPSPGGYDNYNANAQAPEGNH 706
           PSM     YQAN +A + GG+D++N NA APE NH
Sbjct: 168 PSMGPPVTYQANQAATTSGGFDSFNVNAAAPEANH 202


Top