BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00005030
         (1505 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003553032.1| PREDICTED: THO complex subunit 4-like [Glyci...   360   7e-97
ref|XP_003537446.1| PREDICTED: uncharacterized protein LOC100820...   359   9e-97
ref|XP_003600719.1| THO complex subunit [Medicago truncatula] gi...   311   3e-82
ref|XP_002531919.1| RNA and export factor binding protein, putat...   280   5e-73
ref|XP_002276497.1| PREDICTED: THO complex subunit 4 [Vitis vini...   270   6e-70

>ref|XP_003553032.1| PREDICTED: THO complex subunit 4-like [Glycine max]
          Length = 298

 Score =  360 bits (923), Expect = 7e-97
 Identities = 191/259 (73%), Positives = 203/259 (78%), Gaps = 1/259 (0%)
 Frame = +1

Query: 505  MSGAFNSRRMAGPGNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRTRPFPWQSDLFEDSL 684
            M+GA +SRRMAG  NGGRTTGAVRRGPLMVNTRPSSYAIAKSIRR RPFPWQ DLFEDSL
Sbjct: 44   MAGAVSSRRMAGASNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRARPFPWQHDLFEDSL 103

Query: 685  RAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFCELGDLKHYAVHYDKNGHSSGSAEVVYT 864
            RAAGIQG+EVGTKLYVSNLDHGVTNEDIRELF ELG+LK +AVHYDKNGH SGSAEVVYT
Sbjct: 104  RAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRFAVHYDKNGHPSGSAEVVYT 163

Query: 865  RRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPISARVNVTGMNGQRKRTVVMTPRGGR 1044
            RRSDAFAALKRYNNVLLDGKPMKIEIVG+N+ELPISARVNVTG+NG+RKRTVVMTPRGG+
Sbjct: 164  RRSDAFAALKRYNNVLLDGKPMKIEIVGSNSELPISARVNVTGVNGRRKRTVVMTPRGGQ 223

Query: 1045 -GGGPAMLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDAVDKS 1221
             GGGP M N                                            KDAV+KS
Sbjct: 224  AGGGPTMPN----RGAGRGRRGGPRSGSGRGGGGGRGRGRGSRGGGGGRGRGRKDAVEKS 279

Query: 1222 AEELDMELETYHAEAMHIS 1278
            AEELD ELETYHAEAM+IS
Sbjct: 280  AEELDKELETYHAEAMNIS 298


>ref|XP_003537446.1| PREDICTED: uncharacterized protein LOC100820344 [Glycine max]
          Length = 298

 Score =  359 bits (922), Expect = 9e-97
 Identities = 192/259 (74%), Positives = 202/259 (77%), Gaps = 1/259 (0%)
 Frame = +1

Query: 505  MSGAFNSRRMAGPGNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRTRPFPWQSDLFEDSL 684
            M GA NSRRMAG GNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRR RPFPWQ DLFEDSL
Sbjct: 45   MVGAVNSRRMAGAGNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRARPFPWQHDLFEDSL 104

Query: 685  RAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFCELGDLKHYAVHYDKNGHSSGSAEVVYT 864
            RAAGIQG+EVGTKLYVSNLDHGVTNEDIRELF ELG+LK +AVHYDKNGH SGSAEVVYT
Sbjct: 105  RAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRFAVHYDKNGHPSGSAEVVYT 164

Query: 865  RRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPISARVNVTGMNGQRKRTVVMTPRGGR 1044
            RRSDAFAALKRYNNVLLDGKPMKIEIVG+N+ELPISARVNVTG+NG+RKRTVVMT RGG+
Sbjct: 165  RRSDAFAALKRYNNVLLDGKPMKIEIVGSNSELPISARVNVTGVNGRRKRTVVMTSRGGQ 224

Query: 1045 -GGGPAMLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDAVDKS 1221
             GGGPAM                                              KDAV+KS
Sbjct: 225  AGGGPAM-----PTRGAGWGRRGGPRSGSGRGGAGGRGRGRGRGGAGGRGRGRKDAVEKS 279

Query: 1222 AEELDMELETYHAEAMHIS 1278
            AEELD ELETYHAEAM+IS
Sbjct: 280  AEELDKELETYHAEAMNIS 298


>ref|XP_003600719.1| THO complex subunit [Medicago truncatula] gi|355489767|gb|AES70970.1|
            THO complex subunit [Medicago truncatula]
          Length = 291

 Score =  311 bits (797), Expect = 3e-82
 Identities = 173/259 (66%), Positives = 185/259 (71%), Gaps = 5/259 (1%)
 Frame = +1

Query: 508  SGAFNSRRMAGPGNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRTRPFPWQSDLFEDSLR 687
            +GA N RR +   NGGRT GAVRRGPL VNTR SSYAIAKSIRR +   WQSDLFEDSLR
Sbjct: 43   TGAVNGRRTS---NGGRT-GAVRRGPLNVNTRASSYAIAKSIRRPKTLAWQSDLFEDSLR 98

Query: 688  AAGIQGIEVGTKLYVSNLDHGVTNEDIRELFCELGDLKHYAVHYDKNGHSSGSAEVVYTR 867
            AAGIQG+E  TKLYVSNLD GVTNEDIRELF ELG+LK YAVHYDKNGH +GSAEVVY R
Sbjct: 99   AAGIQGVEADTKLYVSNLDRGVTNEDIRELFSELGELKRYAVHYDKNGHPTGSAEVVYNR 158

Query: 868  RSDAFAALKRYNNVLLDGKPMKIEIVGANAELPISARV-----NVTGMNGQRKRTVVMTP 1032
            RSDAFAALKRYNNVLLDGKPMKIEIVG N+ LP++ARV     NV+ MNGQRKRTVVMTP
Sbjct: 159  RSDAFAALKRYNNVLLDGKPMKIEIVGTNSALPVTARVNVSSMNVSAMNGQRKRTVVMTP 218

Query: 1033 RGGRGGGPAMLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDAV 1212
            RGGRGGGPAMLN                                            KD V
Sbjct: 219  RGGRGGGPAMLN--------RGAGWGRRGGSRGGSGSMRGRGRGRPGRGGGRGRGRKDGV 270

Query: 1213 DKSAEELDMELETYHAEAM 1269
            +KSAE+LD ELETYHAEAM
Sbjct: 271  EKSAEQLDKELETYHAEAM 289


>ref|XP_002531919.1| RNA and export factor binding protein, putative [Ricinus communis]
            gi|223528429|gb|EEF30463.1| RNA and export factor binding
            protein, putative [Ricinus communis]
          Length = 268

 Score =  280 bits (717), Expect = 5e-73
 Identities = 152/252 (60%), Positives = 171/252 (67%)
 Frame = +1

Query: 514  AFNSRRMAGPGNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRTRPFPWQSDLFEDSLRAA 693
            A   R   G  +GGR TGA R+GPL VN RPS ++IAK  RR R  PWQ DL EDS+RAA
Sbjct: 27   ARRGRGRGGSFSGGRMTGAGRKGPLSVNARPSQFSIAKPNRRIRNLPWQHDLLEDSIRAA 86

Query: 694  GIQGIEVGTKLYVSNLDHGVTNEDIRELFCELGDLKHYAVHYDKNGHSSGSAEVVYTRRS 873
            GI G+EVGTKLYVSNL++GV+NEDIRELF E+GDLK YAVHYDKNG S+GSAEVVYTRRS
Sbjct: 87   GITGVEVGTKLYVSNLEYGVSNEDIRELFAEIGDLKRYAVHYDKNGRSTGSAEVVYTRRS 146

Query: 874  DAFAALKRYNNVLLDGKPMKIEIVGANAELPISARVNVTGMNGQRKRTVVMTPRGGRGGG 1053
            +AFAALK+YNNVLLDGKPMKIEIVG   E PISARVNVTG+NG+RKRTVVMTP  GRG G
Sbjct: 147  EAFAALKKYNNVLLDGKPMKIEIVGVTGEAPISARVNVTGINGRRKRTVVMTPGPGRGRG 206

Query: 1054 PAMLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDAVDKSAEEL 1233
             A  N                                            K  ++KSA+EL
Sbjct: 207  FAPSN------------RGAGQRSRGGLRNLGRGRGRGRGRGGHGGRGKKQPLEKSADEL 254

Query: 1234 DMELETYHAEAM 1269
            D EL+TYHAEAM
Sbjct: 255  DKELDTYHAEAM 266


>ref|XP_002276497.1| PREDICTED: THO complex subunit 4 [Vitis vinifera]
            gi|296087136|emb|CBI33510.3| unnamed protein product
            [Vitis vinifera]
          Length = 269

 Score =  270 bits (691), Expect = 6e-70
 Identities = 151/260 (58%), Positives = 175/260 (67%), Gaps = 6/260 (2%)
 Frame = +1

Query: 511  GAFNSRRMAGP----GNGGRTTGAV-RRGPLMVNTRPSSYAIAKSIRRTRPFPWQSDLFE 675
            G   +RR  GP     NGGR +G   RRGPL VN RPSSYAIAKS RRT+  PWQ DLFE
Sbjct: 23   GRGRARRGRGPIGGSFNGGRMSGIPPRRGPLRVNARPSSYAIAKSSRRTK-IPWQHDLFE 81

Query: 676  DSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFCELGDLKHYAVHYDKNGHSSGSAEV 855
            DSLRAAG+ G+E GTKLY+SNLD+GVTNEDIRELF E+GD+K YAVHY+KNG  SGSAEV
Sbjct: 82   DSLRAAGLPGLEAGTKLYISNLDYGVTNEDIRELFSEIGDIKRYAVHYEKNGRPSGSAEV 141

Query: 856  VYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPISARVNVT-GMNGQRKRTVVMTP 1032
            VYTRRSDAFAA+KRYNNVLLDGKPMKIEI+G+++++P+SARVNV  G+NG+R+RTVVMTP
Sbjct: 142  VYTRRSDAFAAVKRYNNVLLDGKPMKIEIIGSDSDMPVSARVNVIGGVNGKRRRTVVMTP 201

Query: 1033 RGGRGGGPAMLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDAV 1212
              G   G   +N                                            K  V
Sbjct: 202  GVGHARGSTAIN-------------RSSSRRGRGGLSNGRGRGRAGSRGRGRGRGRKQPV 248

Query: 1213 DKSAEELDMELETYHAEAMH 1272
            +KSA ELD EL+ YHAEAMH
Sbjct: 249  EKSAVELDKELDNYHAEAMH 268