BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00004971
         (2096 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   884   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      861   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      848   0.0  
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...   840   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   823   0.0  

>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
          Length = 1125

 Score =  884 bits (2285), Expect = 0.0
 Identities = 447/568 (78%), Positives = 485/568 (85%), Gaps = 9/568 (1%)
 Frame = +3

Query: 6    TPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMHKYDSDNTKLDVLACSKIQACYLNRQLI 185
            TPSAFQIRY GYKGVVAVDP S  KLSLRKSM KYDSDNTKLDVLA SK Q CYLNRQLI
Sbjct: 562  TPSAFQIRYGGYKGVVAVDPKSCYKLSLRKSMRKYDSDNTKLDVLARSKFQPCYLNRQLI 621

Query: 186  TLLSTLGVRDSVFEKKQGEAVDQLNTMLTDSLKAQEALDLMSAGEITNILKEMLICGYKP 365
            +LLSTLG++D VFEKKQ E V+QLNT+LTDSLKAQE LDLMSAGEITN+LKEMLICGYKP
Sbjct: 622  SLLSTLGIKDDVFEKKQRETVNQLNTILTDSLKAQEVLDLMSAGEITNVLKEMLICGYKP 681

Query: 366  NVEPFLSMMLQTFRASKLLDLRQKTRIVIPMGRAMMGCLDETRTLEYGQVFVHFSKNEPG 545
            N EPFLSMMLQTFRASKLL+LR K+RI IP GRAMMGCLDETRTLEYGQVFV FS N   
Sbjct: 682  NEEPFLSMMLQTFRASKLLELRLKSRIFIPKGRAMMGCLDETRTLEYGQVFVQFSNNRLQ 741

Query: 546  R--------SLSKSYIVTGKVVVAKNPCLYPGDVRVLKAVNVPALHHMVDCVVFPQKGFR 701
                      L K+Y+V GKVVVAKNPCL+PGDVRVL+AV+VP L+HMVDCVVFPQKG R
Sbjct: 742  NLSDDFFSYDLPKNYMVKGKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPR 801

Query: 702  PHTNECSGSDLDGDIYFVCWDPELIPHKTIEPMDYTPAPTTQLDHDVMIEEVEEYFTNYI 881
            PH NECSGSDLDGDIYFVCWD ELIP + I+PMDYT   T +LDHDVMIEEVEEYF NYI
Sbjct: 802  PHPNECSGSDLDGDIYFVCWDHELIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYI 861

Query: 882  LNDSLGIIANAHTVFADRESEKAMSEPCVELAKLFSTAVDFPKTGVPAVIPQKLYVKEYP 1061
            +NDSLGIIANAHTVFAD+E  KAMS+ CV+LA+LFSTAVDFPKTGVPAVIP +L+VKEYP
Sbjct: 862  VNDSLGIIANAHTVFADKEHLKAMSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYP 921

Query: 1062 DFMEKPDKPTYQSPNVIGKLFREVQGISTSAGFITSFTREVARRSYDSDMEVDGFMDYVD 1241
            DFMEKPDKPTY+S NVIGKLFREV+ ISTSAG ITSFT+ VAR SYD +MEVDGFMDYVD
Sbjct: 922  DFMEKPDKPTYKSHNVIGKLFREVKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVD 981

Query: 1242 DAFHHKSNYDYKLGNLMDYYGIKTEAEILGGNIMKMSKSFTKKRDAEAINMAVKSLRKEA 1421
            DAF+HK+NYDYKLGNLMDYYGIKTEAEILGGNIMKMSKSF K+RDAEAINMAV+SLRKEA
Sbjct: 982  DAFYHKTNYDYKLGNLMDYYGIKTEAEILGGNIMKMSKSFNKRRDAEAINMAVRSLRKEA 1041

Query: 1422 RTWFN-XXXXXXXXXXXXAYAKASAWYYVTYHPSYWGCYNEGMGRDHYISFPWCVYPQLV 1598
            R WFN              YAKASAWY+VTYHPSYWGCYNEGM RDHY+SF WCVYP LV
Sbjct: 1042 RAWFNENSSGDVDSGSSDVYAKASAWYHVTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLV 1101

Query: 1599 QIKKEKARMRMYTDLSIEQSFSRGLHIN 1682
            QIKKEK  +R     S+E SFS GL ++
Sbjct: 1102 QIKKEKLSIRR---SSLEYSFS-GLRLS 1125


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  861 bits (2224), Expect = 0.0
 Identities = 422/560 (75%), Positives = 474/560 (84%), Gaps = 1/560 (0%)
 Frame = +3

Query: 6    TPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMHKYDSDNTKLDVLACSKIQACYLNRQLI 185
            TPSAFQIR  G+KGVVA+DPTSS KLSLRKSM KY+S+NTKLDVLA SK Q C+LNRQLI
Sbjct: 555  TPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLI 614

Query: 186  TLLSTLGVRDSVFEKKQGEAVDQLNTMLTDSLKAQEALDLMSAGEITNILKEMLICGYKP 365
            TLLSTLGV D  FEKKQ E VDQLN +LTD L+AQEAL+LMS GE TNILKEML+CGYKP
Sbjct: 615  TLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKP 674

Query: 366  NVEPFLSMMLQTFRASKLLDLRQKTRIVIPMGRAMMGCLDETRTLEYGQVFVHFSKNEPG 545
            + EPFLSMML+TFRASKLL+LR K RI +  GR+MMGCLDETRTL YGQVFV FS    G
Sbjct: 675  DAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFS----G 730

Query: 546  RSLSKSYIVTGKVVVAKNPCLYPGDVRVLKAVNVPALHHMVDCVVFPQKGFRPHTNECSG 725
                + +IV GKV+VAKNPCL+PGDVRVL+AVNVP LHHMVDCVVFPQKG RPH NECSG
Sbjct: 731  SRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSG 790

Query: 726  SDLDGDIYFVCWDPELIPHKTIEPMDYTPAPTTQLDHDVMIEEVEEYFTNYILNDSLGII 905
            SDLDGD+YFVCWDPELIP+K I+PMDY+PA TT+LDH+V IEE+EEYFTNYI+NDSLGII
Sbjct: 791  SDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGII 850

Query: 906  ANAHTVFADRESEKAMSEPCVELAKLFSTAVDFPKTGVPAVIPQKLYVKEYPDFMEKPDK 1085
            +NAHT FADRE +KAMS PC+ELAKLFS AVDFPKTGVPA IPQ+L VKEYPDFMEKPDK
Sbjct: 851  SNAHTAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDK 910

Query: 1086 PTYQSPNVIGKLFREVQGISTSAGFITSFTREVARRSYDSDMEVDGFMDYVDDAFHHKSN 1265
            P+YQS NVIGKLFREV+ ++ +   I   TRE  +R YD DMEV+GF DY+DDAF HKS 
Sbjct: 911  PSYQSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSK 970

Query: 1266 YDYKLGNLMDYYGIKTEAEILGGNIMKMSKSFTKKRDAEAINMAVKSLRKEARTWFNXXX 1445
            YDYKLGNLMDYYG+KTEAEILGG IMKMS+SFTKKRDAEAI+MAV+SLRKEAR+WFN   
Sbjct: 971  YDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKG 1030

Query: 1446 XXXXXXXXXAYAKASAWYYVTYHPSYWGCYNEGMGRDHYISFPWCVYPQLVQIKKEKARM 1625
                     AYAKASAWYYVTYHPSYWG YNEGM RDH++SFPWCVY +L+QIKKEKA +
Sbjct: 1031 SELDEEIDDAYAKASAWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAV 1090

Query: 1626 RMYTDL-SIEQSFSRGLHIN 1682
            R   DL S+E  F RGLH++
Sbjct: 1091 REALDLSSLEHRFQRGLHLH 1110


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  848 bits (2191), Expect = 0.0
 Identities = 416/560 (74%), Positives = 471/560 (84%), Gaps = 1/560 (0%)
 Frame = +3

Query: 6    TPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMHKYDSDNTKLDVLACSKIQACYLNRQLI 185
            TPSAFQIR  G+KGVVA+DPTSS KLSLRKSM KY+S+NTKLDVLA SK Q C+LNRQLI
Sbjct: 555  TPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLI 614

Query: 186  TLLSTLGVRDSVFEKKQGEAVDQLNTMLTDSLKAQEALDLMSAGEITNILKEMLICGYKP 365
            TLLSTLGV D  FEKKQ E VDQLN +LTD L+AQEAL+LMS GE TNILKEML+CGYKP
Sbjct: 615  TLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKP 674

Query: 366  NVEPFLSMMLQTFRASKLLDLRQKTRIVIPMGRAMMGCLDETRTLEYGQVFVHFSKNEPG 545
            + EPFLSMML+TFRASKLL+LR K RI +  GR+MMGCLDETRTL YGQVFV FS    G
Sbjct: 675  DAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFS----G 730

Query: 546  RSLSKSYIVTGKVVVAKNPCLYPGDVRVLKAVNVPALHHMVDCVVFPQKGFRPHTNECSG 725
                + +IV GKV+VAKNPCL+PGDVRVL+AVNVP LHHMVDCVVFPQKG RPH NECSG
Sbjct: 731  SRSERRFIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSG 790

Query: 726  SDLDGDIYFVCWDPELIPHKTIEPMDYTPAPTTQLDHDVMIEEVEEYFTNYILNDSLGII 905
            SDLDGD+YFVCWDPELIP+K I+PMDY+PA TT+LDH+V IEE+EEYFTNYI+NDSLGII
Sbjct: 791  SDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGII 850

Query: 906  ANAHTVFADRESEKAMSEPCVELAKLFSTAVDFPKTGVPAVIPQKLYVKEYPDFMEKPDK 1085
            +NAHT FADRE  KAMS PC+ELAKLFS AVDFPKTGVPA IPQ+L VKE+PDFMEKPDK
Sbjct: 851  SNAHTAFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDK 910

Query: 1086 PTYQSPNVIGKLFREVQGISTSAGFITSFTREVARRSYDSDMEVDGFMDYVDDAFHHKSN 1265
            P+YQS NVIGKLFREV+ ++ +   I   TRE  +R YD DMEV+GF+DY+DDAF +KS 
Sbjct: 911  PSYQSYNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSK 970

Query: 1266 YDYKLGNLMDYYGIKTEAEILGGNIMKMSKSFTKKRDAEAINMAVKSLRKEARTWFNXXX 1445
            YDYKLGNLMDYYG+KTEAEIL G IMKMS+SFTKKRDAE+I+MAV+SLRKEAR+WFN   
Sbjct: 971  YDYKLGNLMDYYGVKTEAEILSGGIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKG 1030

Query: 1446 XXXXXXXXXAYAKASAWYYVTYHPSYWGCYNEGMGRDHYISFPWCVYPQLVQIKKEKARM 1625
                     AYAKASAWYYVTYH SYWG YNEGM RDH++SFPWCVY +L+QIKKEKA +
Sbjct: 1031 SELDEEIDDAYAKASAWYYVTYHHSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAL 1090

Query: 1626 RMYTDL-SIEQSFSRGLHIN 1682
            R   DL S+E  F RG H++
Sbjct: 1091 REALDLSSLEHRFQRGFHLH 1110


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score =  840 bits (2171), Expect = 0.0
 Identities = 418/572 (73%), Positives = 473/572 (82%), Gaps = 13/572 (2%)
 Frame = +3

Query: 6    TPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMHKYDSDNTKLDVLACSKIQACYLNRQLI 185
            TPSAFQIRYAGYKGVVAVDPTSS KLSLR+SM KY+S+NTKLDVLA SK Q C+LNRQLI
Sbjct: 562  TPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLI 621

Query: 186  TLLSTLGVRDSVFEKKQGEAVDQLNTMLTDSLKAQEALDLMSAGEITNILKEMLICGYKP 365
            TLLSTLGV D  FE+KQ EAVDQL+ MLTD L+AQEAL+LMS GE TNILKEML+CGY+P
Sbjct: 622  TLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQP 681

Query: 366  NVEPFLSMMLQTFRASKLLDLRQKTRIVIPMGRAMMGCLDETRTLEYGQVFVHFSKNE-- 539
            + EPFLSMMLQTFRASKLL+LR KTRI IP GR+MMGCLDETRTLE+GQVFV FS +   
Sbjct: 682  DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFR 741

Query: 540  ---------PGRSLSKSYIVTGKVVVAKNPCLYPGDVRVLKAVNVPALHHMVDCVVFPQK 692
                       R   + Y++ G VVVAKNPCL+PGD+R+LKAV+VPALHHMVDCVVFPQK
Sbjct: 742  NLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQK 801

Query: 693  GFRPHTNECSGSDLDGDIYFVCWDPELIPHKTIEPMDYTPAPTTQLDHDVMIEEVEEYFT 872
            G RPH NECSGSDLDGDIYFVCWDPELIP + I PMDYTP P  QLDHDV IEEVEEYFT
Sbjct: 802  GPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFT 861

Query: 873  NYILNDSLGIIANAHTVFADRESEKAMSEPCVELAKLFSTAVDFPKTGVPAVIPQKLYVK 1052
            NYI+NDSLG+IANAHT  AD+ES KAMSEPCVELA+ FS AVDFPKTGVPA IP  L  +
Sbjct: 862  NYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAR 921

Query: 1053 EYPDFMEKPDKPTYQSPNVIGKLFREVQGISTSAGFITSFTREVARRSYDSDMEVDGFMD 1232
            EYPDFMEKPDKP+Y+S NVIGKLFREV+ I+     I SFT +VAR+ YD DMEVDGF D
Sbjct: 922  EYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFED 981

Query: 1233 YVDDAFHHKSNYDYKLGNLMDYYGIKTEAEILGGNIMKMSKSFTKKRDAEAINMAVKSLR 1412
            Y+DDAF++KSNYDYKLGNLM+YYGIKTEAE+L G+ MKMSKSFTKKRDAEAI MAV+SL+
Sbjct: 982  YIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLK 1041

Query: 1413 KEARTWFNXXXXXXXXXXXXAYAKASAWYYVTYHPSYWGCYNEGMGRDHYISFPWCVYPQ 1592
            KEAR+WFN              AKASAWY+VTYH +YWGCYNEGM RDH++SFPWCVY +
Sbjct: 1042 KEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDK 1101

Query: 1593 LVQIK-KEKARMRMYTDL-SIEQSFSRGLHIN 1682
            L+QIK +  AR+R    L S+E+ FSRGLH++
Sbjct: 1102 LIQIKRRNSARIRRSLILPSVERQFSRGLHLS 1133


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  823 bits (2127), Expect = 0.0
 Identities = 411/571 (71%), Positives = 464/571 (81%), Gaps = 12/571 (2%)
 Frame = +3

Query: 3    STPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMHKYDSDNTKLDVLACSKIQACYLNRQL 182
            STPSAFQIRY GYKGVVAVDPTSS KLSLRKSM KY+SDNT LDVLA SK Q  +LNRQL
Sbjct: 550  STPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQL 609

Query: 183  ITLLSTLGVRDSVFEKKQGEAVDQLNTMLTDSLKAQEALDLMSAGEITNILKEMLICGYK 362
            ITLLSTLGV+D VFEKKQ  AVDQL+T+L D + AQEAL+LMS GE TN+LKEML+CGYK
Sbjct: 610  ITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYK 669

Query: 363  PNVEPFLSMMLQTFRASKLLDLRQKTRIVIPMGRAMMGCLDETRTLEYGQVFVHFSKNEP 542
            P+ EPFLSMMLQTFRA+KLL+LR KTRI +P GR+MMGCLDETRTLEYG+VFV  S    
Sbjct: 670  PDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGG 729

Query: 543  GRSLSKS------------YIVTGKVVVAKNPCLYPGDVRVLKAVNVPALHHMVDCVVFP 686
             +S   S            +I+ GK+VVAKNPCL+PGDVRVL AVNVP LHHMVDCVVFP
Sbjct: 730  RQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFP 789

Query: 687  QKGFRPHTNECSGSDLDGDIYFVCWDPELIPHKTIEPMDYTPAPTTQLDHDVMIEEVEEY 866
            QKG RPH NECSGSDLDGDIYFVCWD +LIP + I PMDYTPAPT  LDHDVMIEEVEEY
Sbjct: 790  QKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEY 849

Query: 867  FTNYILNDSLGIIANAHTVFADRESEKAMSEPCVELAKLFSTAVDFPKTGVPAVIPQKLY 1046
            FTNYI+NDSLGIIANAHTVFAD+E +KA  +PC ELAKLFS AVDFPKTGVPA IP+ L 
Sbjct: 850  FTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLR 909

Query: 1047 VKEYPDFMEKPDKPTYQSPNVIGKLFREVQGISTSAGFITSFTREVARRSYDSDMEVDGF 1226
            VKEYPDFMEK DKPTY+S +VIGKLFREV+ I+     I SFTR+VAR+SYD DMEV GF
Sbjct: 910  VKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGF 969

Query: 1227 MDYVDDAFHHKSNYDYKLGNLMDYYGIKTEAEILGGNIMKMSKSFTKKRDAEAINMAVKS 1406
             DYV DAF++KS YDYKLGNLMDYYGIKTE+EIL G+IM+MSKSF +++DAEAI +AVKS
Sbjct: 970  EDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKS 1029

Query: 1407 LRKEARTWFNXXXXXXXXXXXXAYAKASAWYYVTYHPSYWGCYNEGMGRDHYISFPWCVY 1586
            LRKEARTWFN             YAKASAWY+VTYHP YWGCYNEGM RDH++SFPWCVY
Sbjct: 1030 LRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVY 1089

Query: 1587 PQLVQIKKEKARMRMYTDLSIEQSFSRGLHI 1679
             +L+  K++K   R     S+E+  S+GL +
Sbjct: 1090 DKLIHTKRKKMSGRSLHLSSLERRLSQGLRL 1120