BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00004612
         (241 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK41205.1| unknown [Lotus japonicus]                              144   7e-33
ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I sub...   113   2e-23
ref|XP_003595058.1| DNA-directed RNA polymerase I subunit rpa49 ...    96   2e-18
ref|XP_003595057.1| DNA-directed RNA polymerase I subunit rpa49 ...    96   2e-18
ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypep...    96   4e-18

>gb|AFK41205.1| unknown [Lotus japonicus]
          Length = 347

 Score =  144 bits (363), Expect = 7e-33
 Identities = 71/80 (88%), Positives = 78/80 (97%)
 Frame = +1

Query: 1   LQLVVSPVGSPVEFVGTSYSGEAAAGHRAMYALGVFDKEAQTLKVVPIAANKIFRLDPKV 180
           LQLVVSP G+PVEFVGTSY+GEAAAGHRAMYALGVFDK+AQTLKVVPIAANKIFRL+PKV
Sbjct: 5   LQLVVSPAGAPVEFVGTSYTGEAAAGHRAMYALGVFDKKAQTLKVVPIAANKIFRLEPKV 64

Query: 181 KALEAADREPAISTMEEMTP 240
           KALEA D+EPAIST+EE+TP
Sbjct: 65  KALEALDKEPAISTVEELTP 84


>ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like
           [Glycine max]
          Length = 424

 Score =  113 bits (282), Expect = 2e-23
 Identities = 59/79 (74%), Positives = 65/79 (82%)
 Frame = +1

Query: 1   LQLVVSPVGSPVEFVGTSYSGEAAAGHRAMYALGVFDKEAQTLKVVPIAANKIFRLDPKV 180
           L+LVV P  S VEFVGTSY+GEAAA HRA YALGV DKEA TLKVVPIA NKIFRL+PKV
Sbjct: 86  LELVVRPPRSSVEFVGTSYAGEAAARHRAKYALGVLDKEAGTLKVVPIAGNKIFRLEPKV 145

Query: 181 KALEAADREPAISTMEEMT 237
           K + A + EPA ST+EEMT
Sbjct: 146 KGVGAFENEPANSTLEEMT 164


>ref|XP_003595058.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
           gi|355484106|gb|AES65309.1| DNA-directed RNA polymerase
           I subunit rpa49 [Medicago truncatula]
          Length = 411

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 52/81 (64%), Positives = 60/81 (74%), Gaps = 3/81 (3%)
 Frame = +1

Query: 4   QLVVSPVGSPVEFVGTSYSGEAAAGHR--AMYALGVFDKEAQTLKVVPIAANKIFRLDPK 177
           +LVVSP GS VEFVGTSY GEA A  R  A Y LGVFDKE+QTLK+VPI  NKIFRL+P+
Sbjct: 63  ELVVSPAGSSVEFVGTSYEGEAVAAARNPATYMLGVFDKESQTLKIVPIGGNKIFRLEPR 122

Query: 178 VKALEAADREPA-ISTMEEMT 237
           VK +E  +  P  I  +EEMT
Sbjct: 123 VKGVEYKEPPPTPIKMVEEMT 143


>ref|XP_003595057.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
           gi|217073572|gb|ACJ85146.1| unknown [Medicago
           truncatula] gi|355484105|gb|AES65308.1| DNA-directed RNA
           polymerase I subunit rpa49 [Medicago truncatula]
           gi|388522465|gb|AFK49294.1| unknown [Medicago
           truncatula]
          Length = 428

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 52/81 (64%), Positives = 60/81 (74%), Gaps = 3/81 (3%)
 Frame = +1

Query: 4   QLVVSPVGSPVEFVGTSYSGEAAAGHR--AMYALGVFDKEAQTLKVVPIAANKIFRLDPK 177
           +LVVSP GS VEFVGTSY GEA A  R  A Y LGVFDKE+QTLK+VPI  NKIFRL+P+
Sbjct: 80  ELVVSPAGSSVEFVGTSYEGEAVAAARNPATYMLGVFDKESQTLKIVPIGGNKIFRLEPR 139

Query: 178 VKALEAADREPA-ISTMEEMT 237
           VK +E  +  P  I  +EEMT
Sbjct: 140 VKGVEYKEPPPTPIKMVEEMT 160


>ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus
           communis] gi|223539445|gb|EEF41035.1| DNA-directed RNA
           polymerase I 49 kDa polypeptide, putative [Ricinus
           communis]
          Length = 481

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 43/79 (54%), Positives = 62/79 (78%)
 Frame = +1

Query: 1   LQLVVSPVGSPVEFVGTSYSGEAAAGHRAMYALGVFDKEAQTLKVVPIAANKIFRLDPKV 180
           ++LVVSP GS V+FVG SY GEA A     YALGV DK+ +TLK++PIA NKIFRL+PK+
Sbjct: 140 MELVVSPNGSNVDFVGKSYKGEATAAQLCTYALGVLDKKTKTLKIMPIAGNKIFRLEPKI 199

Query: 181 KALEAADREPAISTMEEMT 237
           + ++A+D+EP++   E+++
Sbjct: 200 QGVDASDKEPSVLENEDLS 218