BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00004611
         (680 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I sub...   130   2e-28
ref|XP_003625839.1| DNA-directed RNA polymerase I subunit rpa49 ...   119   6e-25
ref|XP_003595058.1| DNA-directed RNA polymerase I subunit rpa49 ...   113   4e-23
ref|XP_003595057.1| DNA-directed RNA polymerase I subunit rpa49 ...   113   4e-23
ref|XP_003595020.1| DNA-directed RNA polymerase I subunit rpa49 ...   112   9e-23

>ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like
           [Glycine max]
          Length = 424

 Score =  130 bits (328), Expect = 2e-28
 Identities = 60/95 (63%), Positives = 77/95 (81%)
 Frame = +2

Query: 392 PELIQVQAKVQVVHENPHKTPPIIGYFPSGFEPVKSSRNGSTGFQLYRHKNMTKRLQLVV 571
           P+  Q++ +V+VV E+P+KTPP++GYFPSGF+PVK+   G + FQ+YRH++M KRL+LVV
Sbjct: 31  PQSEQIEVEVEVVREHPNKTPPVVGYFPSGFDPVKNHGGGPSNFQVYRHRSMPKRLELVV 90

Query: 572 SPAGSPVEFVGTSYSSEAAAGHRAMYALGVFDKEA 676
            P  S VEFVGTSY+ EAAA HRA YALGV DKEA
Sbjct: 91  RPPRSSVEFVGTSYAGEAAARHRAKYALGVLDKEA 125


>ref|XP_003625839.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
           gi|355500854|gb|AES82057.1| DNA-directed RNA polymerase
           I subunit rpa49 [Medicago truncatula]
          Length = 412

 Score =  119 bits (298), Expect = 6e-25
 Identities = 69/106 (65%), Positives = 79/106 (74%), Gaps = 6/106 (5%)
 Frame = +2

Query: 380 MDT--PPELIQ--VQAKVQVVHENPHKTPPIIGYFPSGFEPVKSSRNGSTGFQLYRHKNM 547
           MDT  PPE +   VQAK++VV  NP K PP +GYF SGF+PVKSS +GST  Q+YR+K M
Sbjct: 1   MDTEPPPEPVHETVQAKIEVVSSNPTKMPPFVGYFTSGFDPVKSS-SGSTDVQVYRNKVM 59

Query: 548 TKRLQLVVSPAGSPVEFVGTSYSSEAAAGHR--AMYALGVFDKEAQ 679
            KR +LVVSPAGS VEFVGTSY  EAAA  R  A Y LGVFDKE+Q
Sbjct: 60  HKRTELVVSPAGSLVEFVGTSYEGEAAAVARNPATYMLGVFDKESQ 105


>ref|XP_003595058.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
           gi|355484106|gb|AES65309.1| DNA-directed RNA polymerase
           I subunit rpa49 [Medicago truncatula]
          Length = 411

 Score =  113 bits (282), Expect = 4e-23
 Identities = 63/103 (61%), Positives = 73/103 (70%), Gaps = 4/103 (3%)
 Frame = +2

Query: 383 DTPPELIQ--VQAKVQVVHENPHKTPPIIGYFPSGFEPVKSSRNGSTGFQLYRHKNMTKR 556
           + PPE +   VQAK++VV  +P K PP IGYF SGF+PVKSS    T  Q+YR+K M KR
Sbjct: 4   EPPPEPVHEPVQAKIEVVSSDPSKMPPFIGYFTSGFDPVKSS--SGTDVQVYRNKVMHKR 61

Query: 557 LQLVVSPAGSPVEFVGTSYSSEAAAGHR--AMYALGVFDKEAQ 679
            +LVVSPAGS VEFVGTSY  EA A  R  A Y LGVFDKE+Q
Sbjct: 62  TELVVSPAGSSVEFVGTSYEGEAVAAARNPATYMLGVFDKESQ 104


>ref|XP_003595057.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
           gi|217073572|gb|ACJ85146.1| unknown [Medicago
           truncatula] gi|355484105|gb|AES65308.1| DNA-directed RNA
           polymerase I subunit rpa49 [Medicago truncatula]
           gi|388522465|gb|AFK49294.1| unknown [Medicago
           truncatula]
          Length = 428

 Score =  113 bits (282), Expect = 4e-23
 Identities = 63/103 (61%), Positives = 73/103 (70%), Gaps = 4/103 (3%)
 Frame = +2

Query: 383 DTPPELIQ--VQAKVQVVHENPHKTPPIIGYFPSGFEPVKSSRNGSTGFQLYRHKNMTKR 556
           + PPE +   VQAK++VV  +P K PP IGYF SGF+PVKSS    T  Q+YR+K M KR
Sbjct: 21  EPPPEPVHEPVQAKIEVVSSDPSKMPPFIGYFTSGFDPVKSS--SGTDVQVYRNKVMHKR 78

Query: 557 LQLVVSPAGSPVEFVGTSYSSEAAAGHR--AMYALGVFDKEAQ 679
            +LVVSPAGS VEFVGTSY  EA A  R  A Y LGVFDKE+Q
Sbjct: 79  TELVVSPAGSSVEFVGTSYEGEAVAAARNPATYMLGVFDKESQ 121


>ref|XP_003595020.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
           gi|355484068|gb|AES65271.1| DNA-directed RNA polymerase
           I subunit rpa49 [Medicago truncatula]
          Length = 419

 Score =  112 bits (279), Expect = 9e-23
 Identities = 63/102 (61%), Positives = 71/102 (69%), Gaps = 2/102 (1%)
 Frame = +2

Query: 380 MDTPPELIQVQAKVQVVHENPHKTPPIIGYFPSGFEPVKSSRNGSTGFQLYRHKNMTKRL 559
           M T P    VQAK++VV  +P K PP IGYF SGF+PVKSS    T  Q+YR+K M KR 
Sbjct: 18  MVTEPVHEPVQAKIEVVSSDPSKMPPFIGYFTSGFDPVKSS--SGTDVQVYRNKVMHKRT 75

Query: 560 QLVVSPAGSPVEFVGTSYSSEAAAGHR--AMYALGVFDKEAQ 679
           +LVVSPAGS VEFVGTSY  EA A  R  A Y LGVFDKE+Q
Sbjct: 76  ELVVSPAGSSVEFVGTSYEGEAVAAARNPATYMLGVFDKESQ 117