BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00004458
         (412 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I sub...   198   3e-49
gb|AFK41205.1| unknown [Lotus japonicus]                              185   3e-45
ref|XP_003625839.1| DNA-directed RNA polymerase I subunit rpa49 ...   179   2e-43
ref|XP_003595059.1| DNA-directed RNA polymerase I subunit rpa49 ...   174   7e-42
ref|XP_003595058.1| DNA-directed RNA polymerase I subunit rpa49 ...   174   7e-42

>ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like
           [Glycine max]
          Length = 424

 Score =  198 bits (504), Expect = 3e-49
 Identities = 100/123 (81%), Positives = 110/123 (89%)
 Frame = +3

Query: 36  LSCIFSYINHLIKFKDQHSMDGVSSAKGHKIPNILRHKFSSLFEVSESKRLPAEKLNLLI 215
           LSCIFSYINHLIKFKDQHS D V SAKGHKIPNILRHKFS++F VSESKRLP EK++LLI
Sbjct: 297 LSCIFSYINHLIKFKDQHSFD-VLSAKGHKIPNILRHKFSNMFAVSESKRLPPEKISLLI 355

Query: 216 SYVLVLTLFSDDFRTNYTDIAKDLKMSSVLLRQLYLHLGCKISSQKRISYATLPVPLKFP 395
            YVLVLTLFSD+FRT+YTDIAKDL M+ + +RQLY HLGCKIS QK I YATLPVPLKFP
Sbjct: 356 CYVLVLTLFSDEFRTDYTDIAKDLSMNILPVRQLYEHLGCKISRQKNIFYATLPVPLKFP 415

Query: 396 DLR 404
           +LR
Sbjct: 416 ELR 418


>gb|AFK41205.1| unknown [Lotus japonicus]
          Length = 347

 Score =  185 bits (470), Expect = 3e-45
 Identities = 90/121 (74%), Positives = 106/121 (87%)
 Frame = +3

Query: 36  LSCIFSYINHLIKFKDQHSMDGVSSAKGHKIPNILRHKFSSLFEVSESKRLPAEKLNLLI 215
           +SCIFSY+NHLIKFKDQ +M GVSSAK HKIP ILR+KFSS+F  +ES+RLP ++LNLLI
Sbjct: 219 MSCIFSYLNHLIKFKDQRTMQGVSSAKSHKIPPILRYKFSSMFGATESRRLPNDELNLLI 278

Query: 216 SYVLVLTLFSDDFRTNYTDIAKDLKMSSVLLRQLYLHLGCKISSQKRISYATLPVPLKFP 395
            YVLVLTLFSD+FRT+YTDI+KDL+MS +L+RQ Y  LGCK  SQ +ISYATLPVPLKFP
Sbjct: 279 CYVLVLTLFSDEFRTDYTDISKDLRMSVLLVRQHYSDLGCKFLSQNKISYATLPVPLKFP 338

Query: 396 D 398
           D
Sbjct: 339 D 339


>ref|XP_003625839.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
           gi|355500854|gb|AES82057.1| DNA-directed RNA polymerase
           I subunit rpa49 [Medicago truncatula]
          Length = 412

 Score =  179 bits (455), Expect = 2e-43
 Identities = 82/123 (66%), Positives = 107/123 (86%)
 Frame = +3

Query: 36  LSCIFSYINHLIKFKDQHSMDGVSSAKGHKIPNILRHKFSSLFEVSESKRLPAEKLNLLI 215
           LSCI  +IN+L+KFKDQHSMDG+SS+K  K+P  L H+F+++F+VSES+RLP EKLNLLI
Sbjct: 280 LSCILLFINYLVKFKDQHSMDGISSSKFEKLPYTLHHRFTAMFDVSESRRLPPEKLNLLI 339

Query: 216 SYVLVLTLFSDDFRTNYTDIAKDLKMSSVLLRQLYLHLGCKISSQKRISYATLPVPLKFP 395
           SYVLVLTLFSDDFRT+Y DIAKDL+M+++ LR ++ HLGCK+ S +++SYATLP+PL FP
Sbjct: 340 SYVLVLTLFSDDFRTDYRDIAKDLRMTTLTLRPIFEHLGCKLISSQKVSYATLPIPLTFP 399

Query: 396 DLR 404
            +R
Sbjct: 400 QIR 402


>ref|XP_003595059.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
           gi|355484107|gb|AES65310.1| DNA-directed RNA polymerase
           I subunit rpa49 [Medicago truncatula]
          Length = 263

 Score =  174 bits (441), Expect = 7e-42
 Identities = 78/122 (63%), Positives = 106/122 (86%)
 Frame = +3

Query: 39  SCIFSYINHLIKFKDQHSMDGVSSAKGHKIPNILRHKFSSLFEVSESKRLPAEKLNLLIS 218
           SCI S+IN+L+KFKDQHSMDG+SS+K  K+P  L H+F+++F+V+ES+RLP EK+NLLIS
Sbjct: 132 SCILSFINYLVKFKDQHSMDGISSSKFEKLPYTLHHRFTTMFDVTESRRLPPEKMNLLIS 191

Query: 219 YVLVLTLFSDDFRTNYTDIAKDLKMSSVLLRQLYLHLGCKISSQKRISYATLPVPLKFPD 398
           YVLVLTLFSDDFRT+Y DIAKDL+M+++ LR ++ HLGCK+ S +++SYATLP+PL F  
Sbjct: 192 YVLVLTLFSDDFRTDYRDIAKDLRMTTLTLRPIFEHLGCKLISSQKVSYATLPIPLTFSQ 251

Query: 399 LR 404
           ++
Sbjct: 252 IK 253


>ref|XP_003595058.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
           gi|355484106|gb|AES65309.1| DNA-directed RNA polymerase
           I subunit rpa49 [Medicago truncatula]
          Length = 411

 Score =  174 bits (441), Expect = 7e-42
 Identities = 78/122 (63%), Positives = 106/122 (86%)
 Frame = +3

Query: 39  SCIFSYINHLIKFKDQHSMDGVSSAKGHKIPNILRHKFSSLFEVSESKRLPAEKLNLLIS 218
           SCI S+IN+L+KFKDQHSMDG+SS+K  K+P  L H+F+++F+V+ES+RLP EK+NLLIS
Sbjct: 280 SCILSFINYLVKFKDQHSMDGISSSKFEKLPYTLHHRFTTMFDVTESRRLPPEKMNLLIS 339

Query: 219 YVLVLTLFSDDFRTNYTDIAKDLKMSSVLLRQLYLHLGCKISSQKRISYATLPVPLKFPD 398
           YVLVLTLFSDDFRT+Y DIAKDL+M+++ LR ++ HLGCK+ S +++SYATLP+PL F  
Sbjct: 340 YVLVLTLFSDDFRTDYRDIAKDLRMTTLTLRPIFEHLGCKLISSQKVSYATLPIPLTFSQ 399

Query: 399 LR 404
           ++
Sbjct: 400 IK 401