BLASTX nr result

ID: Glycyrrhiza23_contig00004250 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Glycyrrhiza23_contig00004250
         (366 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003535362.1| PREDICTED: 5'-3' exoribonuclease 3-like [Gly...    77   2e-12
ref|XP_003542685.1| PREDICTED: ribosome biogenesis regulatory pr...    73   3e-11
gb|AFK36394.1| unknown [Lotus japonicus]                               71   1e-10
gb|ACU16972.1| unknown [Glycine max]                                   70   1e-10
ref|XP_003549765.1| PREDICTED: ribosome biogenesis regulatory pr...    69   5e-10

>ref|XP_003535362.1| PREDICTED: 5'-3' exoribonuclease 3-like [Glycine max]
          Length = 351

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 33/46 (71%), Positives = 41/46 (89%)
 Frame = +2

Query: 227 MEIEGEKQKLFEVDLGNLLAFDSHHTFPSQSPLSREELVNHCLHKG 364
           M++EGEKQ+ F+VDLGNL+AFDS+HTFPSQ PLSRE+L+ HC  KG
Sbjct: 1   MQMEGEKQQKFDVDLGNLVAFDSYHTFPSQPPLSREDLIKHCFLKG 46


>ref|XP_003542685.1| PREDICTED: ribosome biogenesis regulatory protein homolog isoform 1
           [Glycine max]
          Length = 332

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 33/46 (71%), Positives = 39/46 (84%)
 Frame = +2

Query: 227 MEIEGEKQKLFEVDLGNLLAFDSHHTFPSQSPLSREELVNHCLHKG 364
           ME+EGEKQ  F+VDLGNL+AFDS+HTFPSQ  LSRE+L+  CL KG
Sbjct: 1   MEMEGEKQHKFDVDLGNLMAFDSYHTFPSQPSLSREDLIKQCLLKG 46


>gb|AFK36394.1| unknown [Lotus japonicus]
          Length = 351

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 34/47 (72%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
 Frame = +2

Query: 227 MEIEG-EKQKLFEVDLGNLLAFDSHHTFPSQSPLSREELVNHCLHKG 364
           MEI+G E QK+FEVDLG+L+AFDSHHTFP+Q PLSRE+LV   L KG
Sbjct: 1   MEIDGVEHQKVFEVDLGHLMAFDSHHTFPTQPPLSREDLVKQALQKG 47


>gb|ACU16972.1| unknown [Glycine max]
          Length = 147

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 32/46 (69%), Positives = 38/46 (82%)
 Frame = +2

Query: 227 MEIEGEKQKLFEVDLGNLLAFDSHHTFPSQSPLSREELVNHCLHKG 364
           ME+EGEKQ  F+VDLGNL+AFD +HTFPSQ  LSRE+L+  CL KG
Sbjct: 1   MEMEGEKQHKFDVDLGNLMAFDFYHTFPSQPSLSREDLIKQCLLKG 46


>ref|XP_003549765.1| PREDICTED: ribosome biogenesis regulatory protein homolog [Glycine
           max]
          Length = 331

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 31/44 (70%), Positives = 36/44 (81%)
 Frame = +2

Query: 233 IEGEKQKLFEVDLGNLLAFDSHHTFPSQSPLSREELVNHCLHKG 364
           +E EKQ  F+VDLGNL+AFDS+HTFPSQ PLSRE+L   CL KG
Sbjct: 1   MEAEKQHQFDVDLGNLMAFDSYHTFPSQPPLSREDLTRQCLLKG 44


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